---
_id: '12911'
abstract:
- lang: eng
  text: 'This paper establishes new connections between many-body quantum systems,
    One-body Reduced Density Matrices Functional Theory (1RDMFT) and Optimal Transport
    (OT), by interpreting the problem of computing the ground-state energy of a finite-dimensional
    composite quantum system at positive temperature as a non-commutative entropy
    regularized Optimal Transport problem. We develop a new approach to fully characterize
    the dual-primal solutions in such non-commutative setting. The mathematical formalism
    is particularly relevant in quantum chemistry: numerical realizations of the many-electron
    ground-state energy can be computed via a non-commutative version of Sinkhorn
    algorithm. Our approach allows to prove convergence and robustness of this algorithm,
    which, to our best knowledge, were unknown even in the two marginal case. Our
    methods are based on a priori estimates in the dual problem, which we believe
    to be of independent interest. Finally, the above results are extended in 1RDMFT
    setting, where bosonic or fermionic symmetry conditions are enforced on the problem.'
acknowledgement: "This work started when A.G. was visiting the Erwin Schrödinger Institute
  and then continued when D.F. and L.P visited the Theoretical Chemistry Department
  of the Vrije Universiteit Amsterdam. The authors thank the hospitality of both places
  and, especially, P. Gori-Giorgi and K. Giesbertz for fruitful discussions and literature
  suggestions in the early state of the project. The authors also thank J. Maas and
  R. Seiringer for their feedback and useful comments to a first draft of the article.
  Finally, we acknowledge the high quality review done by the anonymous referee of
  our paper, who we would like to thank for the excellent work and constructive feedback.\r\nD.F
  acknowledges support by the European Research Council (ERC) under the European Union's
  Horizon 2020 research and innovation programme (grant agreements No 716117 and No
  694227). A.G. acknowledges funding by the HORIZON EUROPE European Research Council
  under H2020/MSCA-IF “OTmeetsDFT” [grant ID: 795942] as well as partial support of
  his research by the Canada Research Chairs Program (ID 2021-00234) and Natural Sciences
  and Engineering Research Council of Canada, RGPIN-2022-05207. L.P. acknowledges
  support by the Austrian Science Fund (FWF), grants No W1245 and No F65, and by the
  Deutsche Forschungsgemeinschaft (DFG) - Project number 390685813."
article_number: '109963'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dario
  full_name: Feliciangeli, Dario
  id: 41A639AA-F248-11E8-B48F-1D18A9856A87
  last_name: Feliciangeli
  orcid: 0000-0003-0754-8530
- first_name: Augusto
  full_name: Gerolin, Augusto
  last_name: Gerolin
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Feliciangeli D, Gerolin A, Portinale L. A non-commutative entropic optimal
    transport approach to quantum composite systems at positive temperature. <i>Journal
    of Functional Analysis</i>. 2023;285(4). doi:<a href="https://doi.org/10.1016/j.jfa.2023.109963">10.1016/j.jfa.2023.109963</a>
  apa: Feliciangeli, D., Gerolin, A., &#38; Portinale, L. (2023). A non-commutative
    entropic optimal transport approach to quantum composite systems at positive temperature.
    <i>Journal of Functional Analysis</i>. Elsevier. <a href="https://doi.org/10.1016/j.jfa.2023.109963">https://doi.org/10.1016/j.jfa.2023.109963</a>
  chicago: Feliciangeli, Dario, Augusto Gerolin, and Lorenzo Portinale. “A Non-Commutative
    Entropic Optimal Transport Approach to Quantum Composite Systems at Positive Temperature.”
    <i>Journal of Functional Analysis</i>. Elsevier, 2023. <a href="https://doi.org/10.1016/j.jfa.2023.109963">https://doi.org/10.1016/j.jfa.2023.109963</a>.
  ieee: D. Feliciangeli, A. Gerolin, and L. Portinale, “A non-commutative entropic
    optimal transport approach to quantum composite systems at positive temperature,”
    <i>Journal of Functional Analysis</i>, vol. 285, no. 4. Elsevier, 2023.
  ista: Feliciangeli D, Gerolin A, Portinale L. 2023. A non-commutative entropic optimal
    transport approach to quantum composite systems at positive temperature. Journal
    of Functional Analysis. 285(4), 109963.
  mla: Feliciangeli, Dario, et al. “A Non-Commutative Entropic Optimal Transport Approach
    to Quantum Composite Systems at Positive Temperature.” <i>Journal of Functional
    Analysis</i>, vol. 285, no. 4, 109963, Elsevier, 2023, doi:<a href="https://doi.org/10.1016/j.jfa.2023.109963">10.1016/j.jfa.2023.109963</a>.
  short: D. Feliciangeli, A. Gerolin, L. Portinale, Journal of Functional Analysis
    285 (2023).
date_created: 2023-05-07T22:01:02Z
date_published: 2023-08-15T00:00:00Z
date_updated: 2023-11-14T13:21:01Z
day: '15'
department:
- _id: RoSe
- _id: JaMa
doi: 10.1016/j.jfa.2023.109963
ec_funded: 1
external_id:
  arxiv:
  - '2106.11217'
  isi:
  - '000990804300001'
intvolume: '       285'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2106.11217
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 260482E2-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: ' F06504'
  name: Taming Complexity in Partial Di erential Systems
publication: Journal of Functional Analysis
publication_identifier:
  eissn:
  - 1096-0783
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  record:
  - id: '9792'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: A non-commutative entropic optimal transport approach to quantum composite
  systems at positive temperature
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 285
year: '2023'
...
---
_id: '12912'
abstract:
- lang: eng
  text: The chemical potential of adsorbed or confined fluids provides insight into
    their unique thermodynamic properties and determines adsorption isotherms. However,
    it is often difficult to compute this quantity from atomistic simulations using
    existing statistical mechanical methods. We introduce a computational framework
    that utilizes static structure factors, thermodynamic integration, and free energy
    perturbation for calculating the absolute chemical potential of fluids. For demonstration,
    we apply the method to compute the adsorption isotherms of carbon dioxide in a
    metal-organic framework and water in carbon nanotubes.
acknowledgement: We thank Aleks Reinhardt and Daan Frenkel for their insightful comments
  and suggestions on the article. B.C. acknowledges the resources provided by the
  Cambridge Tier-2 system operated by the University of Cambridge Research Computing
  Service funded by EPSRC Tier-2 capital Grant No. EP/P020259/1.
article_number: '161101 '
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Rochus
  full_name: Schmid, Rochus
  last_name: Schmid
- first_name: Bingqing
  full_name: Cheng, Bingqing
  id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
  last_name: Cheng
  orcid: 0000-0002-3584-9632
citation:
  ama: Schmid R, Cheng B. Computing chemical potentials of adsorbed or confined fluids.
    <i>The Journal of Chemical Physics</i>. 2023;158(16). doi:<a href="https://doi.org/10.1063/5.0146711">10.1063/5.0146711</a>
  apa: Schmid, R., &#38; Cheng, B. (2023). Computing chemical potentials of adsorbed
    or confined fluids. <i>The Journal of Chemical Physics</i>. AIP Publishing. <a
    href="https://doi.org/10.1063/5.0146711">https://doi.org/10.1063/5.0146711</a>
  chicago: Schmid, Rochus, and Bingqing Cheng. “Computing Chemical Potentials of Adsorbed
    or Confined Fluids.” <i>The Journal of Chemical Physics</i>. AIP Publishing, 2023.
    <a href="https://doi.org/10.1063/5.0146711">https://doi.org/10.1063/5.0146711</a>.
  ieee: R. Schmid and B. Cheng, “Computing chemical potentials of adsorbed or confined
    fluids,” <i>The Journal of Chemical Physics</i>, vol. 158, no. 16. AIP Publishing,
    2023.
  ista: Schmid R, Cheng B. 2023. Computing chemical potentials of adsorbed or confined
    fluids. The Journal of Chemical Physics. 158(16), 161101.
  mla: Schmid, Rochus, and Bingqing Cheng. “Computing Chemical Potentials of Adsorbed
    or Confined Fluids.” <i>The Journal of Chemical Physics</i>, vol. 158, no. 16,
    161101, AIP Publishing, 2023, doi:<a href="https://doi.org/10.1063/5.0146711">10.1063/5.0146711</a>.
  short: R. Schmid, B. Cheng, The Journal of Chemical Physics 158 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-24T00:00:00Z
date_updated: 2023-08-01T14:34:49Z
day: '24'
ddc:
- '540'
department:
- _id: BiCh
doi: 10.1063/5.0146711
external_id:
  arxiv:
  - '2302.01297'
  isi:
  - '001010676000010'
  pmid:
  - '37093149'
file:
- access_level: open_access
  checksum: 4ab8c965f2fa4e17920bfa846847f137
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-08T07:44:49Z
  date_updated: 2023-05-08T07:44:49Z
  file_id: '12918'
  file_name: 2023_JourChemicalPhysics_Schmid.pdf
  file_size: 6499468
  relation: main_file
  success: 1
file_date_updated: 2023-05-08T07:44:49Z
has_accepted_license: '1'
intvolume: '       158'
isi: 1
issue: '16'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
  eissn:
  - 1089-7690
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
  link:
  - relation: software
    url: https://github.com/BingqingCheng/mu-adsorption
  - relation: software
    url: https://github.com/BingqingCheng/S0
scopus_import: '1'
status: public
title: Computing chemical potentials of adsorbed or confined fluids
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 158
year: '2023'
...
---
_id: '12913'
abstract:
- lang: eng
  text: The coexistence of gate-tunable superconducting, magnetic and topological
    orders in magic-angle twisted bilayer graphene provides opportunities for the
    creation of hybrid Josephson junctions. Here we report the fabrication of gate-defined
    symmetry-broken Josephson junctions in magic-angle twisted bilayer graphene, where
    the weak link is gate-tuned close to the correlated insulator state with a moiré
    filling factor of υ = −2. We observe a phase-shifted and asymmetric Fraunhofer
    pattern with a pronounced magnetic hysteresis. Our theoretical calculations of
    the junction weak link—with valley polarization and orbital magnetization—explain
    most of these unconventional features. The effects persist up to the critical
    temperature of 3.5 K, with magnetic hysteresis observed below 800 mK. We show
    how the combination of magnetization and its current-induced magnetization switching
    allows us to realise a programmable zero-field superconducting diode. Our results
    represent a major advance towards the creation of future superconducting quantum
    electronic devices.
acknowledgement: We are grateful for the fruitful discussions with Allan MacDonald
  and Andrei Bernevig. D.K.E. acknowledges support from the Ministry of Economy and
  Competitiveness of Spain through the “Severo Ochoa” program for Centers of Excellence
  in R&D (SE5-0522), Fundació Privada Cellex, Fundació Privada Mir-Puig, the Generalitat
  de Catalunya through the CERCA program, funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation program (grant
  agreement no. 852927)” and the La Caixa Foundation. K.T.L. acknowledges the support
  of the Ministry of Science and Technology of China and the HKRGC through grants
  MOST20SC04, C6025-19G, 16310219, 16309718, and 16310520. J.D.M. acknowledges support
  from the INPhINIT ‘la Caixa’ Foundation (ID 100010434) fellowship program (LCF/BQ/DI19/11730021).
  Y.M.X. acknowledges the support of HKRGC through Grant No. PDFS2223-6S01.
article_number: '2396'
article_processing_charge: No
article_type: original
author:
- first_name: J.
  full_name: Díez-Mérida, J.
  last_name: Díez-Mérida
- first_name: A.
  full_name: Díez-Carlón, A.
  last_name: Díez-Carlón
- first_name: S. Y.
  full_name: Yang, S. Y.
  last_name: Yang
- first_name: Y. M.
  full_name: Xie, Y. M.
  last_name: Xie
- first_name: X. J.
  full_name: Gao, X. J.
  last_name: Gao
- first_name: Jorden L
  full_name: Senior, Jorden L
  id: 5479D234-2D30-11EA-89CC-40953DDC885E
  last_name: Senior
- first_name: K.
  full_name: Watanabe, K.
  last_name: Watanabe
- first_name: T.
  full_name: Taniguchi, T.
  last_name: Taniguchi
- first_name: X.
  full_name: Lu, X.
  last_name: Lu
- first_name: Andrew P
  full_name: Higginbotham, Andrew P
  id: 4AD6785A-F248-11E8-B48F-1D18A9856A87
  last_name: Higginbotham
  orcid: 0000-0003-2607-2363
- first_name: K. T.
  full_name: Law, K. T.
  last_name: Law
- first_name: Dmitri K.
  full_name: Efetov, Dmitri K.
  last_name: Efetov
citation:
  ama: Díez-Mérida J, Díez-Carlón A, Yang SY, et al. Symmetry-broken Josephson junctions
    and superconducting diodes in magic-angle twisted bilayer graphene. <i>Nature
    Communications</i>. 2023;14. doi:<a href="https://doi.org/10.1038/s41467-023-38005-7">10.1038/s41467-023-38005-7</a>
  apa: Díez-Mérida, J., Díez-Carlón, A., Yang, S. Y., Xie, Y. M., Gao, X. J., Senior,
    J. L., … Efetov, D. K. (2023). Symmetry-broken Josephson junctions and superconducting
    diodes in magic-angle twisted bilayer graphene. <i>Nature Communications</i>.
    Springer Nature. <a href="https://doi.org/10.1038/s41467-023-38005-7">https://doi.org/10.1038/s41467-023-38005-7</a>
  chicago: Díez-Mérida, J., A. Díez-Carlón, S. Y. Yang, Y. M. Xie, X. J. Gao, Jorden
    L Senior, K. Watanabe, et al. “Symmetry-Broken Josephson Junctions and Superconducting
    Diodes in Magic-Angle Twisted Bilayer Graphene.” <i>Nature Communications</i>.
    Springer Nature, 2023. <a href="https://doi.org/10.1038/s41467-023-38005-7">https://doi.org/10.1038/s41467-023-38005-7</a>.
  ieee: J. Díez-Mérida <i>et al.</i>, “Symmetry-broken Josephson junctions and superconducting
    diodes in magic-angle twisted bilayer graphene,” <i>Nature Communications</i>,
    vol. 14. Springer Nature, 2023.
  ista: Díez-Mérida J, Díez-Carlón A, Yang SY, Xie YM, Gao XJ, Senior JL, Watanabe
    K, Taniguchi T, Lu X, Higginbotham AP, Law KT, Efetov DK. 2023. Symmetry-broken
    Josephson junctions and superconducting diodes in magic-angle twisted bilayer
    graphene. Nature Communications. 14, 2396.
  mla: Díez-Mérida, J., et al. “Symmetry-Broken Josephson Junctions and Superconducting
    Diodes in Magic-Angle Twisted Bilayer Graphene.” <i>Nature Communications</i>,
    vol. 14, 2396, Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41467-023-38005-7">10.1038/s41467-023-38005-7</a>.
  short: J. Díez-Mérida, A. Díez-Carlón, S.Y. Yang, Y.M. Xie, X.J. Gao, J.L. Senior,
    K. Watanabe, T. Taniguchi, X. Lu, A.P. Higginbotham, K.T. Law, D.K. Efetov, Nature
    Communications 14 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-26T00:00:00Z
date_updated: 2023-08-01T14:34:00Z
day: '26'
ddc:
- '530'
department:
- _id: AnHi
doi: 10.1038/s41467-023-38005-7
external_id:
  isi:
  - '000979744000004'
  pmid:
  - '37100775'
file:
- access_level: open_access
  checksum: a778105665c10beb2354c92d2b295115
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-08T07:26:40Z
  date_updated: 2023-05-08T07:26:40Z
  file_id: '12917'
  file_name: 2023_NatureComm_DiezMerida.pdf
  file_size: 1405588
  relation: main_file
  success: 1
file_date_updated: 2023-05-08T07:26:40Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
  eissn:
  - 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Symmetry-broken Josephson junctions and superconducting diodes in magic-angle
  twisted bilayer graphene
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2023'
...
---
_id: '12914'
abstract:
- lang: eng
  text: We numerically study two methods of measuring tunneling times using a quantum
    clock. In the conventional method using the Larmor clock, we show that the Larmor
    tunneling time can be shorter for higher tunneling barriers. In the second method,
    we study the probability of a spin-flip of a particle when it is transmitted through
    a potential barrier including a spatially rotating field interacting with its
    spin. According to the adiabatic theorem, the probability depends on the velocity
    of the particle inside the barrier. It is numerically observed that the probability
    increases for higher barriers, which is consistent with the result obtained by
    the Larmor clock. By comparing outcomes for different initial spin states, we
    suggest that one of the main causes of the apparent decrease in the tunneling
    time can be the filtering effect occurring at the end of the barrier.
acknowledgement: We thank W. H. Zurek, N. Sinitsyn, M. O. Scully, M. Arndt, and C.
  H. Marrows for helpful discussions. F.S. acknowledges support from the Los Alamos
  National Laboratory LDRD program under Project No. 20230049DR and the Center for
  Nonlinear Studies. F.S. also thanks the European Union’s Horizon 2020 research and
  innovation program under the Marie Skłodowska-Curie Grant No. 754411 for support.
  W.G.U. thanks the Natural Science and Engineering Research Council of Canada, the
  Hagler Institute of Texas A&M University, the Helmholz Inst HZDR, Germany for support
  while this work was being done.
article_number: '042216'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Fumika
  full_name: Suzuki, Fumika
  id: 650C99FC-1079-11EA-A3C0-73AE3DDC885E
  last_name: Suzuki
  orcid: 0000-0003-4982-5970
- first_name: William G.
  full_name: Unruh, William G.
  last_name: Unruh
citation:
  ama: Suzuki F, Unruh WG. Numerical quantum clock simulations for measuring tunneling
    times. <i>Physical Review A</i>. 2023;107(4). doi:<a href="https://doi.org/10.1103/PhysRevA.107.042216">10.1103/PhysRevA.107.042216</a>
  apa: Suzuki, F., &#38; Unruh, W. G. (2023). Numerical quantum clock simulations
    for measuring tunneling times. <i>Physical Review A</i>. American Physical Society.
    <a href="https://doi.org/10.1103/PhysRevA.107.042216">https://doi.org/10.1103/PhysRevA.107.042216</a>
  chicago: Suzuki, Fumika, and William G. Unruh. “Numerical Quantum Clock Simulations
    for Measuring Tunneling Times.” <i>Physical Review A</i>. American Physical Society,
    2023. <a href="https://doi.org/10.1103/PhysRevA.107.042216">https://doi.org/10.1103/PhysRevA.107.042216</a>.
  ieee: F. Suzuki and W. G. Unruh, “Numerical quantum clock simulations for measuring
    tunneling times,” <i>Physical Review A</i>, vol. 107, no. 4. American Physical
    Society, 2023.
  ista: Suzuki F, Unruh WG. 2023. Numerical quantum clock simulations for measuring
    tunneling times. Physical Review A. 107(4), 042216.
  mla: Suzuki, Fumika, and William G. Unruh. “Numerical Quantum Clock Simulations
    for Measuring Tunneling Times.” <i>Physical Review A</i>, vol. 107, no. 4, 042216,
    American Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevA.107.042216">10.1103/PhysRevA.107.042216</a>.
  short: F. Suzuki, W.G. Unruh, Physical Review A 107 (2023).
date_created: 2023-05-07T22:01:03Z
date_published: 2023-04-20T00:00:00Z
date_updated: 2023-08-01T14:33:21Z
day: '20'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.107.042216
ec_funded: 1
external_id:
  arxiv:
  - '2207.13130'
  isi:
  - '000975799300006'
intvolume: '       107'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2207.13130
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Physical Review A
publication_identifier:
  eissn:
  - 2469-9934
  issn:
  - 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Numerical quantum clock simulations for measuring tunneling times
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2023'
...
---
_id: '12915'
abstract:
- lang: eng
  text: Cu2–xS and Cu2–xSe have recently been reported as promising thermoelectric
    (TE) materials for medium-temperature applications. In contrast, Cu2–xTe, another
    member of the copper chalcogenide family, typically exhibits low Seebeck coefficients
    that limit its potential to achieve a superior thermoelectric figure of merit,
    zT, particularly in the low-temperature range where this material could be effective.
    To address this, we investigated the TE performance of Cu1.5–xTe–Cu2Se nanocomposites
    by consolidating surface-engineered Cu1.5Te nanocrystals. This surface engineering
    strategy allows for precise adjustment of Cu/Te ratios and results in a reversible
    phase transition at around 600 K in Cu1.5–xTe–Cu2Se nanocomposites, as systematically
    confirmed by in situ high-temperature X-ray diffraction combined with differential
    scanning calorimetry analysis. The phase transition leads to a conversion from
    metallic-like to semiconducting-like TE properties. Additionally, a layer of Cu2Se
    generated around Cu1.5–xTe nanoparticles effectively inhibits Cu1.5–xTe grain
    growth, minimizing thermal conductivity and decreasing hole concentration. These
    properties indicate that copper telluride based compounds have a promising thermoelectric
    potential, translated into a high dimensionless zT of 1.3 at 560 K.
acknowledgement: 'The authors acknowledge support from the projects ENE2016-77798-C4-3-R
  and NANOGEN (PID2020-116093RB-C43) funded by MCIN/AEI/10.13039/501100011033/and
  by “ERDF A way of making Europe”, and by the “European Union”. K.X. and B.N. thank
  the China Scholarship Council (CSC) for scholarship support. The authors acknowledge
  funding from Generalitat de Catalunya 2017 SGR 327 and 2017 SGR 1246. ICN2 is supported
  by the Severo Ochoa program from the Spanish MCIN/AEI (Grant No.: CEX2021-001214-S).
  IREC and ICN2 are funded by the CERCA Programme/Generalitat de Catalunya. J.L. acknowledges
  support from the Natural Science Foundation of Sichuan province (2022NSFSC1229).
  Part of the present work was performed in the frameworks of Universitat de Barcelona
  Nanoscience Ph.D. program and Universitat Autònoma de Barcelona Materials Science
  Ph.D. program. Y.L. acknowledges funding from the National Natural Science Foundation
  of China (Grant No. 22209034) and the Innovation and Entrepreneurship Project of
  Overseas Returnees in Anhui Province (Grants No. 2022LCX002). K.H.L. acknowledges
  the financial support of the National Natural Science Foundation of China (Grant
  No. 22208293).'
article_processing_charge: No
article_type: original
author:
- first_name: Congcong
  full_name: Xing, Congcong
  last_name: Xing
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Bingfei
  full_name: Nan, Bingfei
  last_name: 'Nan'
- first_name: Maria Garcia
  full_name: Ramon, Maria Garcia
  id: 1ffff7cd-ed76-11ed-8d5f-be5e7c364eb9
  last_name: Ramon
- first_name: Khak Ho
  full_name: Lim, Khak Ho
  last_name: Lim
- first_name: Junshan
  full_name: Li, Junshan
  last_name: Li
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Bed
  full_name: Poudel, Bed
  last_name: Poudel
- first_name: Amin
  full_name: Nozariasbmarz, Amin
  last_name: Nozariasbmarz
- first_name: Wenjie
  full_name: Li, Wenjie
  last_name: Li
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Xing C, Zhang Y, Xiao K, et al. Thermoelectric performance of surface-engineered
    Cu1.5–xTe–Cu2Se nanocomposites. <i>ACS Nano</i>. 2023;17(9):8442-8452. doi:<a
    href="https://doi.org/10.1021/acsnano.3c00495">10.1021/acsnano.3c00495</a>
  apa: Xing, C., Zhang, Y., Xiao, K., Han, X., Liu, Y., Nan, B., … Cabot, A. (2023).
    Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites.
    <i>ACS Nano</i>. American Chemical Society. <a href="https://doi.org/10.1021/acsnano.3c00495">https://doi.org/10.1021/acsnano.3c00495</a>
  chicago: Xing, Congcong, Yu Zhang, Ke Xiao, Xu Han, Yu Liu, Bingfei Nan, Maria Garcia
    Ramon, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se
    Nanocomposites.” <i>ACS Nano</i>. American Chemical Society, 2023. <a href="https://doi.org/10.1021/acsnano.3c00495">https://doi.org/10.1021/acsnano.3c00495</a>.
  ieee: C. Xing <i>et al.</i>, “Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se
    nanocomposites,” <i>ACS Nano</i>, vol. 17, no. 9. American Chemical Society, pp.
    8442–8452, 2023.
  ista: Xing C, Zhang Y, Xiao K, Han X, Liu Y, Nan B, Ramon MG, Lim KH, Li J, Arbiol
    J, Poudel B, Nozariasbmarz A, Li W, Ibáñez M, Cabot A. 2023. Thermoelectric performance
    of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites. ACS Nano. 17(9), 8442–8452.
  mla: Xing, Congcong, et al. “Thermoelectric Performance of Surface-Engineered Cu1.5–XTe–Cu2Se
    Nanocomposites.” <i>ACS Nano</i>, vol. 17, no. 9, American Chemical Society, 2023,
    pp. 8442–52, doi:<a href="https://doi.org/10.1021/acsnano.3c00495">10.1021/acsnano.3c00495</a>.
  short: C. Xing, Y. Zhang, K. Xiao, X. Han, Y. Liu, B. Nan, M.G. Ramon, K.H. Lim,
    J. Li, J. Arbiol, B. Poudel, A. Nozariasbmarz, W. Li, M. Ibáñez, A. Cabot, ACS
    Nano 17 (2023) 8442–8452.
date_created: 2023-05-07T22:01:04Z
date_published: 2023-05-09T00:00:00Z
date_updated: 2023-10-04T11:29:22Z
day: '09'
department:
- _id: MaIb
doi: 10.1021/acsnano.3c00495
external_id:
  isi:
  - '000976063200001'
  pmid:
  - '37071412'
intvolume: '        17'
isi: 1
issue: '9'
language:
- iso: eng
month: '05'
oa_version: None
page: 8442-8452
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
  issn:
  - 1936-0851
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Thermoelectric performance of surface-engineered Cu1.5–xTe–Cu2Se nanocomposites
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2023'
...
---
_id: '12916'
abstract:
- lang: eng
  text: "We apply a variant of the square-sieve to produce an upper bound for the
    number of rational points of bounded height on a family of surfaces that admit
    a fibration over P1 whose general fibre is a hyperelliptic curve. The implied
    constant does not depend on the coefficients of the polynomial defining the surface.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dante
  full_name: Bonolis, Dante
  id: 6A459894-5FDD-11E9-AF35-BB24E6697425
  last_name: Bonolis
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
citation:
  ama: Bonolis D, Browning TD. Uniform bounds for rational points on hyperelliptic
    fibrations. <i>Annali della Scuola Normale Superiore di Pisa - Classe di Scienze</i>.
    2023;24(1):173-204. doi:<a href="https://doi.org/10.2422/2036-2145.202010_018">10.2422/2036-2145.202010_018</a>
  apa: Bonolis, D., &#38; Browning, T. D. (2023). Uniform bounds for rational points
    on hyperelliptic fibrations. <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>. Scuola Normale Superiore - Edizioni della Normale. <a
    href="https://doi.org/10.2422/2036-2145.202010_018">https://doi.org/10.2422/2036-2145.202010_018</a>
  chicago: Bonolis, Dante, and Timothy D Browning. “Uniform Bounds for Rational Points
    on Hyperelliptic Fibrations.” <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>. Scuola Normale Superiore - Edizioni della Normale, 2023.
    <a href="https://doi.org/10.2422/2036-2145.202010_018">https://doi.org/10.2422/2036-2145.202010_018</a>.
  ieee: D. Bonolis and T. D. Browning, “Uniform bounds for rational points on hyperelliptic
    fibrations,” <i>Annali della Scuola Normale Superiore di Pisa - Classe di Scienze</i>,
    vol. 24, no. 1. Scuola Normale Superiore - Edizioni della Normale, pp. 173–204,
    2023.
  ista: Bonolis D, Browning TD. 2023. Uniform bounds for rational points on hyperelliptic
    fibrations. Annali della Scuola Normale Superiore di Pisa - Classe di Scienze.
    24(1), 173–204.
  mla: Bonolis, Dante, and Timothy D. Browning. “Uniform Bounds for Rational Points
    on Hyperelliptic Fibrations.” <i>Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze</i>, vol. 24, no. 1, Scuola Normale Superiore - Edizioni della
    Normale, 2023, pp. 173–204, doi:<a href="https://doi.org/10.2422/2036-2145.202010_018">10.2422/2036-2145.202010_018</a>.
  short: D. Bonolis, T.D. Browning, Annali Della Scuola Normale Superiore Di Pisa
    - Classe Di Scienze 24 (2023) 173–204.
date_created: 2023-05-07T22:01:04Z
date_published: 2023-02-16T00:00:00Z
date_updated: 2023-10-18T06:54:30Z
day: '16'
department:
- _id: TiBr
doi: 10.2422/2036-2145.202010_018
external_id:
  arxiv:
  - '2007.14182'
intvolume: '        24'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.2007.14182
month: '02'
oa: 1
oa_version: Preprint
page: 173-204
publication: Annali della Scuola Normale Superiore di Pisa - Classe di Scienze
publication_identifier:
  eissn:
  - 2036-2145
  issn:
  - 0391-173X
publication_status: published
publisher: Scuola Normale Superiore - Edizioni della Normale
quality_controlled: '1'
scopus_import: '1'
status: public
title: Uniform bounds for rational points on hyperelliptic fibrations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2023'
...
---
_id: '12933'
abstract:
- lang: eng
  text: Datasets of the publication "Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster".
article_processing_charge: No
author:
- first_name: Gemma
  full_name: Puixeu Sala, Gemma
  id: 33AB266C-F248-11E8-B48F-1D18A9856A87
  last_name: Puixeu Sala
  orcid: 0000-0001-8330-1754
citation:
  ama: 'Puixeu Sala G. Data from: Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster. 2023. doi:<a
    href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>'
  apa: 'Puixeu Sala, G. (2023). Data from: Sex-specific estimation of cis and trans
    regulation of gene expression in heads and gonads of Drosophila melanogaster.
    Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12933">https://doi.org/10.15479/AT:ISTA:12933</a>'
  chicago: 'Puixeu Sala, Gemma. “Data from: Sex-Specific Estimation of Cis and Trans
    Regulation of Gene Expression in Heads and Gonads of Drosophila Melanogaster.”
    Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12933">https://doi.org/10.15479/AT:ISTA:12933</a>.'
  ieee: 'G. Puixeu Sala, “Data from: Sex-specific estimation of cis and trans regulation
    of gene expression in heads and gonads of Drosophila melanogaster.” Institute
    of Science and Technology Austria, 2023.'
  ista: 'Puixeu Sala G. 2023. Data from: Sex-specific estimation of cis and trans
    regulation of gene expression in heads and gonads of Drosophila melanogaster,
    Institute of Science and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>.'
  mla: 'Puixeu Sala, Gemma. <i>Data from: Sex-Specific Estimation of Cis and Trans
    Regulation of Gene Expression in Heads and Gonads of Drosophila Melanogaster</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12933">10.15479/AT:ISTA:12933</a>.'
  short: G. Puixeu Sala, (2023).
contributor:
- first_name: Ariana
  id: 2A0848E2-F248-11E8-B48F-1D18A9856A87
  last_name: Macon
- first_name: Beatriz
  id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
  last_name: Vicoso
  orcid: 0000-0002-4579-8306
date_created: 2023-05-10T10:00:49Z
date_published: 2023-05-15T00:00:00Z
date_updated: 2023-12-13T12:15:36Z
day: '15'
ddc:
- '570'
department:
- _id: GradSch
- _id: NiBa
- _id: BeVi
doi: 10.15479/AT:ISTA:12933
file:
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  date_created: 2023-05-11T12:50:18Z
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  file_id: '12944'
  file_name: readme.txt
  file_size: 4566
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  success: 1
file_date_updated: 2023-05-11T12:50:18Z
has_accepted_license: '1'
month: '05'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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  - id: '14058'
    relation: used_in_publication
    status: public
  - id: '14077'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: Sex-specific estimation of cis and trans regulation of gene expression
  in heads and gonads of Drosophila melanogaster'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12945'
abstract:
- lang: eng
  text: "basic data for use in code for experimental data analysis for manuscript
    under revision: \r\nDynamic pathogen detection and social feedback shape collective
    hygiene in ants\r\nCasillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S"
acknowledged_ssus:
- _id: LifeSc
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the
  Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program
  (Grant No. RGP0065/2012) to GT.
article_processing_charge: No
author:
- first_name: Sylvia
  full_name: Cremer, Sylvia
  id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
  last_name: Cremer
  orcid: 0000-0002-2193-3868
citation:
  ama: 'Cremer S. Data from: “Dynamic pathogen detection and social feedback shape
    collective hygiene in ants” . 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>'
  apa: 'Cremer, S. (2023). Data from: “Dynamic pathogen detection and social feedback
    shape collective hygiene in ants” . Institute of Science and Technology Austria.
    <a href="https://doi.org/10.15479/AT:ISTA:12945">https://doi.org/10.15479/AT:ISTA:12945</a>'
  chicago: 'Cremer, Sylvia. “Data from: ‘Dynamic Pathogen Detection and Social Feedback
    Shape Collective Hygiene in Ants’ .” Institute of Science and Technology Austria,
    2023. <a href="https://doi.org/10.15479/AT:ISTA:12945">https://doi.org/10.15479/AT:ISTA:12945</a>.'
  ieee: 'S. Cremer, “Data from: ‘Dynamic pathogen detection and social feedback shape
    collective hygiene in ants’ .” Institute of Science and Technology Austria, 2023.'
  ista: 'Cremer S. 2023. Data from: ‘Dynamic pathogen detection and social feedback
    shape collective hygiene in ants’ , Institute of Science and Technology Austria,
    <a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>.'
  mla: 'Cremer, Sylvia. <i>Data from: “Dynamic Pathogen Detection and Social Feedback
    Shape Collective Hygiene in Ants” </i>. Institute of Science and Technology Austria,
    2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12945">10.15479/AT:ISTA:12945</a>.'
  short: S. Cremer, (2023).
contributor:
- contributor_type: data_collector
  first_name: Barbara E
  id: 351ED2AA-F248-11E8-B48F-1D18A9856A87
  last_name: Casillas Perez
- contributor_type: data_collector
  first_name: Anna V
  id: 406F989C-F248-11E8-B48F-1D18A9856A87
  last_name: Grasse
- contributor_type: researcher
  first_name: Katarina
  last_name: Bodova
- contributor_type: supervisor
  first_name: Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
date_created: 2023-05-11T21:35:17Z
date_published: 2023-05-12T00:00:00Z
date_updated: 2023-08-07T13:09:09Z
day: '12'
ddc:
- '570'
department:
- _id: SyCr
doi: 10.15479/AT:ISTA:12945
file:
- access_level: open_access
  checksum: 3eadf17fd59ad8c98bf10bf63061863c
  content_type: application/zip
  creator: scremer
  date_created: 2023-05-12T08:04:04Z
  date_updated: 2023-05-12T08:04:04Z
  file_id: '12947'
  file_name: Experimental_data.zip
  file_size: 3414674
  relation: main_file
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  content_type: application/octet-stream
  creator: scremer
  date_created: 2023-05-12T08:04:08Z
  date_updated: 2023-05-12T08:04:08Z
  file_id: '12948'
  file_name: README_Experimental_Data.md
  file_size: 2113
  relation: main_file
  success: 1
file_date_updated: 2023-05-12T08:04:08Z
has_accepted_license: '1'
keyword:
- collective behavior
- host-pathogen interactions
- social immunity
- epidemiology
- social insects
- probabilistic modeling
month: '05'
oa: 1
oa_version: None
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '13127'
    relation: used_in_publication
    status: public
status: public
title: 'Data from: "Dynamic pathogen detection and social feedback shape collective
  hygiene in ants" '
tmp:
  image: /images/cc_by_nc.png
  legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
  short: CC BY-NC (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12949'
abstract:
- lang: eng
  text: The classical infinitesimal model is a simple and robust model for the inheritance
    of quantitative traits. In this model, a quantitative trait is expressed as the
    sum of a genetic and a non-genetic (environmental) component and the genetic component
    of offspring traits within a family follows a normal distribution around the average
    of the parents’ trait values, and has a variance that is independent of the trait
    values of the parents. Although the trait distribution across the whole population
    can be far from normal, the trait distributions within families are normally distributed
    with a variance-covariance matrix that is determined entirely by that in  the
    ancestral population and the probabilities of identity determined by the pedigree.
    Moreover, conditioning on some of the trait values within the pedigree has predictable
    effects on the mean and variance within and between families. In previous work,
    Barton et al. (2017), we showed that when trait values are determined by the sum
    of a large number of Mendelian factors, each  of small effect, one can justify
    the infinitesimal model as limit of Mendelian inheritance. It was also shown that
    under some forms of epistasis, trait values within a family are still normally
    distributed.
article_processing_charge: No
author:
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Barton NH. The infinitesimal model with dominance. 2023. doi:<a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>
  apa: Barton, N. H. (2023). The infinitesimal model with dominance. Institute of
    Science and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:12949">https://doi.org/10.15479/AT:ISTA:12949</a>
  chicago: Barton, Nicholas H. “The Infinitesimal Model with Dominance.” Institute
    of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/AT:ISTA:12949">https://doi.org/10.15479/AT:ISTA:12949</a>.
  ieee: N. H. Barton, “The infinitesimal model with dominance.” Institute of Science
    and Technology Austria, 2023.
  ista: Barton NH. 2023. The infinitesimal model with dominance, Institute of Science
    and Technology Austria, <a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>.
  mla: Barton, Nicholas H. <i>The Infinitesimal Model with Dominance</i>. Institute
    of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/AT:ISTA:12949">10.15479/AT:ISTA:12949</a>.
  short: N.H. Barton, (2023).
contributor:
- contributor_type: researcher
  first_name: Amandine
  last_name: Veber
- contributor_type: researcher
  first_name: Alison
  last_name: Etheridge
date_created: 2023-05-13T09:49:09Z
date_published: 2023-05-13T00:00:00Z
date_updated: 2025-05-28T11:57:00Z
day: '13'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:12949
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  success: 1
file_date_updated: 2023-05-16T04:09:08Z
has_accepted_license: '1'
keyword:
- Quantitative genetics
- infinitesimal model
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: bd6958e0-d553-11ed-ba76-86eba6a76c00
  grant_number: '101055327'
  name: Understanding the evolution of continuous genomes
publisher: Institute of Science and Technology Austria
related_material:
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status: public
title: The infinitesimal model with dominance
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12959'
abstract:
- lang: eng
  text: "This paper deals with the large-scale behaviour of dynamical optimal transport
    on Zd\r\n-periodic graphs with general lower semicontinuous and convex energy
    densities. Our main contribution is a homogenisation result that describes the
    effective behaviour of the discrete problems in terms of a continuous optimal
    transport problem. The effective energy density can be explicitly expressed in
    terms of a cell formula, which is a finite-dimensional convex programming problem
    that depends non-trivially on the local geometry of the discrete graph and the
    discrete energy density. Our homogenisation result is derived from a Γ\r\n-convergence
    result for action functionals on curves of measures, which we prove under very
    mild growth conditions on the energy density. We investigate the cell formula
    in several cases of interest, including finite-volume discretisations of the Wasserstein
    distance, where non-trivial limiting behaviour occurs."
acknowledgement: J.M. gratefully acknowledges support by the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (Grant Agreement No. 716117). J.M and L.P. also acknowledge support from the Austrian
  Science Fund (FWF), grants No F65 and W1245. E.K. gratefully acknowledges support
  by the German Research Foundation through the Hausdorff Center for Mathematics and
  the Collaborative Research Center 1060. P.G. is partially funded by the Deutsche
  Forschungsgemeinschaft (DFG, German Research Foundation)—350398276. We thank the
  anonymous reviewer for the careful reading and for useful suggestions. Open access
  funding provided by Austrian Science Fund (FWF).
article_number: '143'
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Peter
  full_name: Gladbach, Peter
  last_name: Gladbach
- first_name: Eva
  full_name: Kopfer, Eva
  last_name: Kopfer
- first_name: Jan
  full_name: Maas, Jan
  id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
  last_name: Maas
  orcid: 0000-0002-0845-1338
- first_name: Lorenzo
  full_name: Portinale, Lorenzo
  id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
  last_name: Portinale
citation:
  ama: Gladbach P, Kopfer E, Maas J, Portinale L. Homogenisation of dynamical optimal
    transport on periodic graphs. <i>Calculus of Variations and Partial Differential
    Equations</i>. 2023;62(5). doi:<a href="https://doi.org/10.1007/s00526-023-02472-z">10.1007/s00526-023-02472-z</a>
  apa: Gladbach, P., Kopfer, E., Maas, J., &#38; Portinale, L. (2023). Homogenisation
    of dynamical optimal transport on periodic graphs. <i>Calculus of Variations and
    Partial Differential Equations</i>. Springer Nature. <a href="https://doi.org/10.1007/s00526-023-02472-z">https://doi.org/10.1007/s00526-023-02472-z</a>
  chicago: Gladbach, Peter, Eva Kopfer, Jan Maas, and Lorenzo Portinale. “Homogenisation
    of Dynamical Optimal Transport on Periodic Graphs.” <i>Calculus of Variations
    and Partial Differential Equations</i>. Springer Nature, 2023. <a href="https://doi.org/10.1007/s00526-023-02472-z">https://doi.org/10.1007/s00526-023-02472-z</a>.
  ieee: P. Gladbach, E. Kopfer, J. Maas, and L. Portinale, “Homogenisation of dynamical
    optimal transport on periodic graphs,” <i>Calculus of Variations and Partial Differential
    Equations</i>, vol. 62, no. 5. Springer Nature, 2023.
  ista: Gladbach P, Kopfer E, Maas J, Portinale L. 2023. Homogenisation of dynamical
    optimal transport on periodic graphs. Calculus of Variations and Partial Differential
    Equations. 62(5), 143.
  mla: Gladbach, Peter, et al. “Homogenisation of Dynamical Optimal Transport on Periodic
    Graphs.” <i>Calculus of Variations and Partial Differential Equations</i>, vol.
    62, no. 5, 143, Springer Nature, 2023, doi:<a href="https://doi.org/10.1007/s00526-023-02472-z">10.1007/s00526-023-02472-z</a>.
  short: P. Gladbach, E. Kopfer, J. Maas, L. Portinale, Calculus of Variations and
    Partial Differential Equations 62 (2023).
date_created: 2023-05-14T22:01:00Z
date_published: 2023-04-28T00:00:00Z
date_updated: 2023-10-04T11:34:49Z
day: '28'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00526-023-02472-z
ec_funded: 1
external_id:
  arxiv:
  - '2110.15321'
  isi:
  - '000980588900001'
file:
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  creator: dernst
  date_created: 2023-10-04T11:34:10Z
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file_date_updated: 2023-10-04T11:34:10Z
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '5'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '716117'
  name: Optimal Transport and Stochastic Dynamics
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
publication: Calculus of Variations and Partial Differential Equations
publication_identifier:
  eissn:
  - 1432-0835
  issn:
  - 0944-2669
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Homogenisation of dynamical optimal transport on periodic graphs
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 62
year: '2023'
...
---
_id: '12960'
abstract:
- lang: eng
  text: "Isomanifolds are the generalization of isosurfaces to arbitrary dimension
    and codimension, i.e., submanifolds of Rd defined as the zero set of some multivariate
    multivalued smooth function f:Rd→Rd−n, where n is the intrinsic dimension of the
    manifold. A natural way to approximate a smooth isomanifold M=f−1(0) is to consider
    its piecewise linear (PL) approximation M^\r\n based on a triangulation T of the
    ambient space Rd. In this paper, we describe a simple algorithm to trace isomanifolds
    from a given starting point. The algorithm works for arbitrary dimensions n and
    d, and any precision D. Our main result is that, when f (or M) has bounded complexity,
    the complexity of the algorithm is polynomial in d and δ=1/D (and unavoidably
    exponential in n). Since it is known that for δ=Ω(d2.5), M^ is O(D2)-close and
    isotopic to M\r\n, our algorithm produces a faithful PL-approximation of isomanifolds
    of bounded complexity in time polynomial in d. Combining this algorithm with dimensionality
    reduction techniques, the dependency on d in the size of M^ can be completely
    removed with high probability. We also show that the algorithm can handle isomanifolds
    with boundary and, more generally, isostratifolds. The algorithm for isomanifolds
    with boundary has been implemented and experimental results are reported, showing
    that it is practical and can handle cases that are far ahead of the state-of-the-art. "
acknowledgement: The authors have received funding from the European Research Council
  under the European Union's ERC grant greement 339025 GUDHI (Algorithmic Foundations
  of Geometric Un-derstanding  in  Higher  Dimensions).   The  first  author  was  supported  by  the  French  government,through
  the 3IA C\^ote d'Azur Investments in the Future project managed by the National
  ResearchAgency (ANR) with the reference ANR-19-P3IA-0002.  The third author was
  supported by the Eu-ropean Union's Horizon 2020 research and innovation programme
  under the Marie Sk\lodowska-Curiegrant agreement 754411 and the FWF (Austrian Science
  Fund) grant M 3073.
article_processing_charge: No
article_type: original
author:
- first_name: Jean Daniel
  full_name: Boissonnat, Jean Daniel
  last_name: Boissonnat
- first_name: Siargey
  full_name: Kachanovich, Siargey
  last_name: Kachanovich
- first_name: Mathijs
  full_name: Wintraecken, Mathijs
  id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
  last_name: Wintraecken
  orcid: 0000-0002-7472-2220
citation:
  ama: Boissonnat JD, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in
    time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. <i>SIAM Journal
    on Computing</i>. 2023;52(2):452-486. doi:<a href="https://doi.org/10.1137/21M1412918">10.1137/21M1412918</a>
  apa: Boissonnat, J. D., Kachanovich, S., &#38; Wintraecken, M. (2023). Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. <i>SIAM
    Journal on Computing</i>. Society for Industrial and Applied Mathematics. <a href="https://doi.org/10.1137/21M1412918">https://doi.org/10.1137/21M1412918</a>
  chicago: Boissonnat, Jean Daniel, Siargey Kachanovich, and Mathijs Wintraecken.
    “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter–Freudenthal–Kuhn
    Triangulations.” <i>SIAM Journal on Computing</i>. Society for Industrial and
    Applied Mathematics, 2023. <a href="https://doi.org/10.1137/21M1412918">https://doi.org/10.1137/21M1412918</a>.
  ieee: J. D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds
    in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations,”
    <i>SIAM Journal on Computing</i>, vol. 52, no. 2. Society for Industrial and Applied
    Mathematics, pp. 452–486, 2023.
  ista: Boissonnat JD, Kachanovich S, Wintraecken M. 2023. Tracing isomanifolds in
    Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn triangulations. SIAM
    Journal on Computing. 52(2), 452–486.
  mla: Boissonnat, Jean Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial
    in d Using Coxeter–Freudenthal–Kuhn Triangulations.” <i>SIAM Journal on Computing</i>,
    vol. 52, no. 2, Society for Industrial and Applied Mathematics, 2023, pp. 452–86,
    doi:<a href="https://doi.org/10.1137/21M1412918">10.1137/21M1412918</a>.
  short: J.D. Boissonnat, S. Kachanovich, M. Wintraecken, SIAM Journal on Computing
    52 (2023) 452–486.
date_created: 2023-05-14T22:01:00Z
date_published: 2023-04-30T00:00:00Z
date_updated: 2023-10-10T07:34:35Z
day: '30'
department:
- _id: HeEd
doi: 10.1137/21M1412918
ec_funded: 1
external_id:
  isi:
  - '001013183000012'
intvolume: '        52'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://hal-emse.ccsd.cnrs.fr/3IA-COTEDAZUR/hal-04083489v1
month: '04'
oa: 1
oa_version: Submitted Version
page: 452-486
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: fc390959-9c52-11eb-aca3-afa58bd282b2
  grant_number: M03073
  name: Learning and triangulating manifolds via collapses
publication: SIAM Journal on Computing
publication_identifier:
  eissn:
  - 1095-7111
  issn:
  - 0097-5397
publication_status: published
publisher: Society for Industrial and Applied Mathematics
quality_controlled: '1'
related_material:
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  - id: '9441'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: Tracing isomanifolds in Rd in time polynomial in d using Coxeter–Freudenthal–Kuhn
  triangulations
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 52
year: '2023'
...
---
_id: '12961'
abstract:
- lang: eng
  text: 'Two notes separated by a doubling in frequency sound similar to humans. This
    “octave equivalence” is critical to perception and production of music and speech
    and occurs early in human development. Because it also occurs cross-culturally,
    a biological basis of octave equivalence has been hypothesized. Members of our
    team previousy suggested four human traits are at the root of this phenomenon:
    (1) vocal learning, (2) clear octave information in vocal harmonics, (3) differing
    vocal ranges, and (4) vocalizing together. Using cross-species studies, we can
    test how relevant these respective traits are, while controlling for enculturation
    effects and addressing questions of phylogeny. Common marmosets possess forms
    of three of the four traits, lacking differing vocal ranges. We tested 11 common
    marmosets by adapting an established head-turning paradigm, creating a parallel
    test to an important infant study. Unlike human infants, marmosets responded similarly
    to tones shifted by an octave or other intervals. Because previous studies with
    the same head-turning paradigm produced differential results to discernable acoustic
    stimuli in common marmosets, our results suggest that marmosets do not perceive
    octave equivalence. Our work suggests differing vocal ranges between adults and
    children and men and women and the way they are used in singing together may be
    critical to the development of octave equivalence.'
acknowledgement: We thank Prof. Dr. Thomas Bugnyar for supporting the study and financing
  the marmoset laboratory, and Alexandra Bohmann and the animal keeping team for their
  care. Vedrana Šlipogor was funded by University of South Bohemia postdoctoral fellowship.
article_number: e13395
article_processing_charge: No
article_type: original
author:
- first_name: Bernhard
  full_name: Wagner, Bernhard
  last_name: Wagner
- first_name: Vedrana
  full_name: Šlipogor, Vedrana
  last_name: Šlipogor
- first_name: Jinook
  full_name: Oh, Jinook
  id: 403169A4-080F-11EA-9993-BF3F3DDC885E
  last_name: Oh
  orcid: 0000-0001-7425-2372
- first_name: Marion
  full_name: Varga, Marion
  last_name: Varga
- first_name: Marisa
  full_name: Hoeschele, Marisa
  last_name: Hoeschele
citation:
  ama: Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. A comparison between common
    marmosets (Callithrix jacchus) and human infants sheds light on traits proposed
    to be at the root of human octave equivalence. <i>Developmental Science</i>. 2023;26(5).
    doi:<a href="https://doi.org/10.1111/desc.13395">10.1111/desc.13395</a>
  apa: Wagner, B., Šlipogor, V., Oh, J., Varga, M., &#38; Hoeschele, M. (2023). A
    comparison between common marmosets (Callithrix jacchus) and human infants sheds
    light on traits proposed to be at the root of human octave equivalence. <i>Developmental
    Science</i>. Wiley. <a href="https://doi.org/10.1111/desc.13395">https://doi.org/10.1111/desc.13395</a>
  chicago: Wagner, Bernhard, Vedrana Šlipogor, Jinook Oh, Marion Varga, and Marisa
    Hoeschele. “A Comparison between Common Marmosets (Callithrix Jacchus) and Human
    Infants Sheds Light on Traits Proposed to Be at the Root of Human Octave Equivalence.”
    <i>Developmental Science</i>. Wiley, 2023. <a href="https://doi.org/10.1111/desc.13395">https://doi.org/10.1111/desc.13395</a>.
  ieee: B. Wagner, V. Šlipogor, J. Oh, M. Varga, and M. Hoeschele, “A comparison between
    common marmosets (Callithrix jacchus) and human infants sheds light on traits
    proposed to be at the root of human octave equivalence,” <i>Developmental Science</i>,
    vol. 26, no. 5. Wiley, 2023.
  ista: Wagner B, Šlipogor V, Oh J, Varga M, Hoeschele M. 2023. A comparison between
    common marmosets (Callithrix jacchus) and human infants sheds light on traits
    proposed to be at the root of human octave equivalence. Developmental Science.
    26(5), e13395.
  mla: Wagner, Bernhard, et al. “A Comparison between Common Marmosets (Callithrix
    Jacchus) and Human Infants Sheds Light on Traits Proposed to Be at the Root of
    Human Octave Equivalence.” <i>Developmental Science</i>, vol. 26, no. 5, e13395,
    Wiley, 2023, doi:<a href="https://doi.org/10.1111/desc.13395">10.1111/desc.13395</a>.
  short: B. Wagner, V. Šlipogor, J. Oh, M. Varga, M. Hoeschele, Developmental Science
    26 (2023).
date_created: 2023-05-14T22:01:00Z
date_published: 2023-09-01T00:00:00Z
date_updated: 2023-10-04T11:37:33Z
day: '01'
department:
- _id: SyCr
doi: 10.1111/desc.13395
external_id:
  pmid:
  - '37101383'
intvolume: '        26'
issue: '5'
language:
- iso: eng
month: '09'
oa_version: None
pmid: 1
publication: Developmental Science
publication_identifier:
  eissn:
  - 1467-7687
  issn:
  - 1363-755X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A comparison between common marmosets (Callithrix jacchus) and human infants
  sheds light on traits proposed to be at the root of human octave equivalence
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 26
year: '2023'
...
---
_id: '12964'
abstract:
- lang: eng
  text: "Pattern formation is of great importance for its contribution across different
    biological behaviours. During developmental processes for example, patterns of
    chemical gradients are\r\nestablished to determine cell fate and complex tissue
    patterns emerge to define structures such\r\nas limbs and vascular networks. Patterns
    are also seen in collectively migrating groups, for\r\ninstance traveling waves
    of density emerging in moving animal flocks as well as collectively migrating
    cells and tissues. To what extent these biological patterns arise spontaneously
    through\r\nthe local interaction of individual constituents or are dictated by
    higher level instructions is\r\nstill an open question however there is evidence
    for the involvement of both types of process.\r\nWhere patterns arise spontaneously
    there is a long standing interest in how far the interplay\r\nof mechanics, e.g.
    force generation and deformation, and chemistry, e.g. gene regulation\r\nand signaling,
    contributes to the behaviour. This is because many systems are able to both\r\nchemically
    regulate mechanical force production and chemically sense mechanical deformation,\r\nforming
    mechano-chemical feedback loops which can potentially become unstable towards\r\nspatio
    and/or temporal patterning.\r\nWe work with experimental collaborators to investigate
    the possibility that this type of\r\ninteraction drives pattern formation in biological
    systems at different scales. We focus first on\r\ntissue-level ERK-density waves
    observed during the wound healing response across different\r\nsystems where many
    previous studies have proposed that patterns depend on polarized cell\r\nmigration
    and arise from a mechanical flocking-like mechanism. By combining theory with\r\nmechanical
    and optogenetic perturbation experiments on in vitro monolayers we instead find\r\nevidence
    for mechanochemical pattern formation involving only scalar bilateral feedbacks\r\nbetween
    ERK signaling and cell contraction. We perform further modeling and experiment\r\nto
    study how this instability couples with polar cell migration in order to produce
    a robust\r\nand efficient wound healing response. In a following chapter we implement
    ERK-density\r\ncoupling and cell migration in a 2D active vertex model to investigate
    the interaction of\r\nERK-density patterning with different tissue rheologies
    and find that the spatio-temporal\r\ndynamics are able to both locally and globally
    fluidize a tissue across the solid-fluid glass\r\ntransition. In a last chapter
    we move towards lower spatial scales in the context of subcellular\r\npatterning
    of the cell cytoskeleton where we investigate the transition between phases of\r\nspatially
    homogeneous temporal oscillations and chaotic spatio-temporal patterning in the\r\ndynamics
    of myosin and ROCK activities (a motor component of the actomyosin cytoskeleton\r\nand
    its activator). Experimental evidence supports an intrinsic chemical oscillator
    which we\r\nencode in a reaction model and couple to a contractile active gel
    description of the cell cortex.\r\nThe model exhibits phases of chemical oscillations
    and contractile spatial patterning which\r\nreproduce many features of the dynamics
    seen in Drosophila oocyte epithelia in vivo. However,\r\nadditional pharmacological
    perturbations to inhibit myosin contractility leaves the role of\r\ncontractile
    instability unclear. We discuss alternative hypotheses and investigate the possibility\r\nof
    reaction-diffusion instability."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Daniel R
  full_name: Boocock, Daniel R
  id: 453AF628-F248-11E8-B48F-1D18A9856A87
  last_name: Boocock
  orcid: 0000-0002-1585-2631
citation:
  ama: Boocock DR. Mechanochemical pattern formation across biological scales. 2023.
    doi:<a href="https://doi.org/10.15479/at:ista:12964">10.15479/at:ista:12964</a>
  apa: Boocock, D. R. (2023). <i>Mechanochemical pattern formation across biological
    scales</i>. Institute of Science and Technology Austria. <a href="https://doi.org/10.15479/at:ista:12964">https://doi.org/10.15479/at:ista:12964</a>
  chicago: Boocock, Daniel R. “Mechanochemical Pattern Formation across Biological
    Scales.” Institute of Science and Technology Austria, 2023. <a href="https://doi.org/10.15479/at:ista:12964">https://doi.org/10.15479/at:ista:12964</a>.
  ieee: D. R. Boocock, “Mechanochemical pattern formation across biological scales,”
    Institute of Science and Technology Austria, 2023.
  ista: Boocock DR. 2023. Mechanochemical pattern formation across biological scales.
    Institute of Science and Technology Austria.
  mla: Boocock, Daniel R. <i>Mechanochemical Pattern Formation across Biological Scales</i>.
    Institute of Science and Technology Austria, 2023, doi:<a href="https://doi.org/10.15479/at:ista:12964">10.15479/at:ista:12964</a>.
  short: D.R. Boocock, Mechanochemical Pattern Formation across Biological Scales,
    Institute of Science and Technology Austria, 2023.
date_created: 2023-05-15T14:52:36Z
date_published: 2023-05-17T00:00:00Z
date_updated: 2023-08-04T11:02:40Z
day: '17'
ddc:
- '530'
degree_awarded: PhD
department:
- _id: GradSch
- _id: EdHa
doi: 10.15479/at:ista:12964
ec_funded: 1
file:
- access_level: closed
  checksum: d51240675fc6dc0e3f5dc0c902695d3a
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  creator: dboocock
  date_created: 2023-05-17T13:39:54Z
  date_updated: 2023-05-19T07:04:25Z
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  creator: dboocock
  date_created: 2023-05-17T13:39:53Z
  date_updated: 2023-05-17T14:35:13Z
  file_id: '12989'
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  relation: source_file
file_date_updated: 2023-05-19T07:04:25Z
has_accepted_license: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '05'
oa_version: Published Version
page: '146'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication_identifier:
  isbn:
  - 978-3-99078-032-9
  issn:
  - 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
  record:
  - id: '8602'
    relation: part_of_dissertation
    status: public
status: public
supervisor:
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
title: Mechanochemical pattern formation across biological scales
tmp:
  image: /images/cc_by_nc_sa.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
    BY-NC-SA 4.0)
  short: CC BY-NC-SA (4.0)
type: dissertation
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2023'
...
---
_id: '12972'
abstract:
- lang: eng
  text: Embroidery is a long-standing and high-quality approach to making logos and
    images on textiles. Nowadays, it can also be performed via automated machines
    that weave threads with high spatial accuracy. A characteristic feature of the
    appearance of the threads is a high degree of anisotropy. The anisotropic behavior
    is caused by depositing thin but long strings of thread. As a result, the stitched
    patterns convey both color and direction. Artists leverage this anisotropic behavior
    to enhance pure color images with textures, illusions of motion, or depth cues.
    However, designing colorful embroidery patterns with prescribed directionality
    is a challenging task, one usually requiring an expert designer. In this work,
    we propose an interactive algorithm that generates machine-fabricable embroidery
    patterns from multi-chromatic images equipped with user-specified directionality
    fields.We cast the problem of finding a stitching pattern into vector theory.
    To find a suitable stitching pattern, we extract sources and sinks from the divergence
    field of the vector field extracted from the input and use them to trace streamlines.
    We further optimize the streamlines to guarantee a smooth and connected stitching
    pattern. The generated patterns approximate the color distribution constrained
    by the directionality field. To allow for further artistic control, the trade-off
    between color match and directionality match can be interactively explored via
    an intuitive slider. We showcase our approach by fabricating several embroidery
    paths.
acknowledgement: This work was supported by the European Research Council (ERC) under
  the European Union’s Horizon 2020 research and innovation program (grant agreement
  No 715767 – MATERIALIZABLE), and FWF Lise Meitner (Grant M 3319). We thank the anonymous
  reviewers for their insightful feedback; Solal Pirelli, Shardul Chiplunkar, and
  Paola Mejia for proofreading; everyone in the visual computing group at ISTA for
  inspiring lunch and coffee breaks; Thibault Tricard for help producing the results
  of Phasor Noise.
article_processing_charge: No
article_type: original
author:
- first_name: Zhenyuan
  full_name: Liu, Zhenyuan
  id: 70f0d7cf-ae65-11ec-a14f-89dfc5505b19
  last_name: Liu
  orcid: 0000-0001-9200-5690
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
- first_name: Christian
  full_name: Hafner, Christian
  id: 400429CC-F248-11E8-B48F-1D18A9856A87
  last_name: Hafner
- first_name: Raphael
  full_name: Charrondiere, Raphael
  id: a3a24133-2cc7-11ec-be88-8ddaf6f464b1
  last_name: Charrondiere
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
citation:
  ama: Liu Z, Piovarci M, Hafner C, Charrondiere R, Bickel B. Directionality-aware
    design of embroidery patterns. <i>Computer Graphics Forum</i>. 2023;42(2):397-409.
    doi:<a href="https://doi.org/10.1111/cgf.14770 ">10.1111/cgf.14770 </a>
  apa: 'Liu, Z., Piovarci, M., Hafner, C., Charrondiere, R., &#38; Bickel, B. (2023).
    Directionality-aware design of embroidery patterns. <i>Computer Graphics Forum</i>.
    Saarbrucken, Germany: Wiley. <a href="https://doi.org/10.1111/cgf.14770 ">https://doi.org/10.1111/cgf.14770
    </a>'
  chicago: Liu, Zhenyuan, Michael Piovarci, Christian Hafner, Raphael Charrondiere,
    and Bernd Bickel. “Directionality-Aware Design of Embroidery Patterns.” <i>Computer
    Graphics Forum</i>. Wiley, 2023. <a href="https://doi.org/10.1111/cgf.14770 ">https://doi.org/10.1111/cgf.14770
    </a>.
  ieee: Z. Liu, M. Piovarci, C. Hafner, R. Charrondiere, and B. Bickel, “Directionality-aware
    design of embroidery patterns,” <i>Computer Graphics Forum</i>, vol. 42, no. 2.
    Wiley, pp. 397–409, 2023.
  ista: Liu Z, Piovarci M, Hafner C, Charrondiere R, Bickel B. 2023. Directionality-aware
    design of embroidery patterns. Computer Graphics Forum. 42(2), 397–409.
  mla: Liu, Zhenyuan, et al. “Directionality-Aware Design of Embroidery Patterns.”
    <i>Computer Graphics Forum</i>, vol. 42, no. 2, Wiley, 2023, pp. 397–409, doi:<a
    href="https://doi.org/10.1111/cgf.14770 ">10.1111/cgf.14770 </a>.
  short: Z. Liu, M. Piovarci, C. Hafner, R. Charrondiere, B. Bickel, Computer Graphics
    Forum 42 (2023) 397–409.
conference:
  end_date: 2023-05-12
  location: Saarbrucken, Germany
  name: 'EG: Eurographics'
  start_date: 2023-05-08
date_created: 2023-05-16T08:47:25Z
date_published: 2023-05-08T00:00:00Z
date_updated: 2023-08-01T14:47:05Z
day: '08'
ddc:
- '004'
department:
- _id: BeBi
doi: '10.1111/cgf.14770 '
ec_funded: 1
external_id:
  isi:
  - '001000062600033'
file:
- access_level: open_access
  checksum: 4c188c2be4745467a8790bbf5d6491aa
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T08:28:37Z
  date_updated: 2023-05-16T08:28:37Z
  file_id: '12974'
  file_name: Zhenyuan2023.pdf
  file_size: 24003702
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T08:28:37Z
has_accepted_license: '1'
intvolume: '        42'
isi: 1
issue: '2'
keyword:
- embroidery
- design
- directionality
- density
- image
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 397-409
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '715767'
  name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
    Modeling'
publication: Computer Graphics Forum
publication_identifier:
  issn:
  - 1467-8659
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Directionality-aware design of embroidery patterns
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 42
year: '2023'
...
---
_id: '12976'
abstract:
- lang: eng
  text: "3D printing based on continuous deposition of materials, such as filament-based
    3D printing, has seen widespread adoption thanks to its versatility in working
    with a wide range of materials. An important shortcoming of this type of technology
    is its limited multi-material capabilities. While there are simple hardware designs
    that enable multi-material printing in principle, the required software is heavily
    underdeveloped. A typical hardware design fuses together individual materials
    fed into a single chamber from multiple inlets before they are deposited. This
    design, however, introduces a time delay between the intended material mixture
    and its actual deposition. In this work, inspired by diverse path planning research
    in robotics, we show that this mechanical challenge can be addressed via improved
    printer control. We propose to formulate the search for optimal multi-material
    printing policies in a reinforcement\r\nlearning setup. We put forward a simple
    numerical deposition model that takes into account the non-linear material mixing
    and delayed material deposition. To validate our system we focus on color fabrication,
    a problem known for its strict requirements for varying material mixtures at a
    high spatial frequency. We demonstrate that our learned control policy outperforms
    state-of-the-art hand-crafted algorithms."
acknowledgement: This work is graciously supported by FWF Lise Meitner (Grant M 3319).
  Kang Liao sincerely thank Emiliano Luci, Chunyu Lin, and Yao Zhao for their huge
  support.
article_processing_charge: No
author:
- first_name: Kang
  full_name: Liao, Kang
  last_name: Liao
- first_name: Thibault
  full_name: Tricard, Thibault
  last_name: Tricard
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Hans-Peter
  full_name: Seidel, Hans-Peter
  last_name: Seidel
- first_name: Vahid
  full_name: Babaei, Vahid
  last_name: Babaei
citation:
  ama: 'Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. Learning deposition policies
    for fused multi-material 3D printing. In: <i>2023 IEEE International Conference
    on Robotics and Automation</i>. Vol 2023. IEEE; 2023:12345-12352. doi:<a href="https://doi.org/10.1109/ICRA48891.2023.10160465">10.1109/ICRA48891.2023.10160465</a>'
  apa: 'Liao, K., Tricard, T., Piovarci, M., Seidel, H.-P., &#38; Babaei, V. (2023).
    Learning deposition policies for fused multi-material 3D printing. In <i>2023
    IEEE International Conference on Robotics and Automation</i> (Vol. 2023, pp. 12345–12352).
    London, United Kingdom: IEEE. <a href="https://doi.org/10.1109/ICRA48891.2023.10160465">https://doi.org/10.1109/ICRA48891.2023.10160465</a>'
  chicago: Liao, Kang, Thibault Tricard, Michael Piovarci, Hans-Peter Seidel, and
    Vahid Babaei. “Learning Deposition Policies for Fused Multi-Material 3D Printing.”
    In <i>2023 IEEE International Conference on Robotics and Automation</i>, 2023:12345–52.
    IEEE, 2023. <a href="https://doi.org/10.1109/ICRA48891.2023.10160465">https://doi.org/10.1109/ICRA48891.2023.10160465</a>.
  ieee: K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, and V. Babaei, “Learning deposition
    policies for fused multi-material 3D printing,” in <i>2023 IEEE International
    Conference on Robotics and Automation</i>, London, United Kingdom, 2023, vol.
    2023, pp. 12345–12352.
  ista: 'Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. 2023. Learning deposition
    policies for fused multi-material 3D printing. 2023 IEEE International Conference
    on Robotics and Automation. ICRA: International Conference on Robotics and Automation
    vol. 2023, 12345–12352.'
  mla: Liao, Kang, et al. “Learning Deposition Policies for Fused Multi-Material 3D
    Printing.” <i>2023 IEEE International Conference on Robotics and Automation</i>,
    vol. 2023, IEEE, 2023, pp. 12345–52, doi:<a href="https://doi.org/10.1109/ICRA48891.2023.10160465">10.1109/ICRA48891.2023.10160465</a>.
  short: K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, V. Babaei, in:, 2023 IEEE
    International Conference on Robotics and Automation, IEEE, 2023, pp. 12345–12352.
conference:
  end_date: 2023-06-02
  location: London, United Kingdom
  name: 'ICRA: International Conference on Robotics and Automation'
  start_date: 2023-05-29
date_created: 2023-05-16T09:14:09Z
date_published: 2023-07-04T00:00:00Z
date_updated: 2023-12-13T11:20:00Z
day: '04'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1109/ICRA48891.2023.10160465
external_id:
  isi:
  - '001048371104068'
file:
- access_level: open_access
  checksum: daeaa67124777d88487f933ea3f77164
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T09:12:05Z
  date_updated: 2023-05-16T09:12:05Z
  file_id: '12977'
  file_name: Liao2023.pdf
  file_size: 5367986
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T09:12:05Z
has_accepted_license: '1'
intvolume: '      2023'
isi: 1
keyword:
- reinforcement learning
- deposition
- control
- color
- multi-filament
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 12345-12352
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
publication: 2023 IEEE International Conference on Robotics and Automation
publication_identifier:
  eisbn:
  - '9798350323658'
  issn:
  - 1050-4729
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Learning deposition policies for fused multi-material 3D printing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2023
year: '2023'
...
---
_id: '12979'
abstract:
- lang: eng
  text: 'Color and gloss are fundamental aspects of surface appearance. State-of-the-art
    fabrication techniques can manipulate both properties of the printed 3D objects.
    However, in the context of appearance reproduction, perceptual aspects of color
    and gloss are usually handled separately, even though previous perceptual studies
    suggest their interaction. Our work is motivated by previous studies demonstrating
    a perceived color shift due to a change in the object''s gloss, i.e., two samples
    with the same color but different surface gloss appear as they have different
    colors. In this paper, we conduct new experiments which support this observation
    and provide insights into the magnitude and direction of the perceived color change.
    We use the observations as guidance to design a new method that estimates and
    corrects the color shift enabling the fabrication of objects with the same perceived
    color but different surface gloss. We formulate the problem as an optimization
    procedure solved using differentiable rendering. We evaluate the effectiveness
    of our method in perceptual experiments with 3D objects fabricated using a multi-material
    3D printer and demonstrate potential applications. '
acknowledgement: We thank Matthew S Zurawski for the 3D model of the car speed shape.
  This research has been supported by the Swiss National Science Foundation (SNSF,
  Grant 200502) and the FWF Lise Meitner (Grant M 3319).
article_number: '21'
article_processing_charge: No
author:
- first_name: Jorge
  full_name: Condor, Jorge
  last_name: Condor
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
- first_name: Piotr
  full_name: Didyk, Piotr
  last_name: Didyk
citation:
  ama: 'Condor J, Piovarci M, Bickel B, Didyk P. Gloss-aware color correction for
    3D printing. In: <i>SIGGRAPH ’23 Conference Proceedings</i>. Association for Computing
    Machinery; 2023. doi:<a href="https://doi.org/10.1145/3588432.3591546">10.1145/3588432.3591546</a>'
  apa: 'Condor, J., Piovarci, M., Bickel, B., &#38; Didyk, P. (2023). Gloss-aware
    color correction for 3D printing. In <i>SIGGRAPH ’23 Conference Proceedings</i>.
    Los Angeles, CA, United States: Association for Computing Machinery. <a href="https://doi.org/10.1145/3588432.3591546">https://doi.org/10.1145/3588432.3591546</a>'
  chicago: Condor, Jorge, Michael Piovarci, Bernd Bickel, and Piotr Didyk. “Gloss-Aware
    Color Correction for 3D Printing.” In <i>SIGGRAPH ’23 Conference Proceedings</i>.
    Association for Computing Machinery, 2023. <a href="https://doi.org/10.1145/3588432.3591546">https://doi.org/10.1145/3588432.3591546</a>.
  ieee: J. Condor, M. Piovarci, B. Bickel, and P. Didyk, “Gloss-aware color correction
    for 3D printing,” in <i>SIGGRAPH ’23 Conference Proceedings</i>, Los Angeles,
    CA, United States, 2023.
  ista: 'Condor J, Piovarci M, Bickel B, Didyk P. 2023. Gloss-aware color correction
    for 3D printing. SIGGRAPH ’23 Conference Proceedings. SIGGRAPH: Computer Graphics
    and Interactive Techniques Conference, 21.'
  mla: Condor, Jorge, et al. “Gloss-Aware Color Correction for 3D Printing.” <i>SIGGRAPH
    ’23 Conference Proceedings</i>, 21, Association for Computing Machinery, 2023,
    doi:<a href="https://doi.org/10.1145/3588432.3591546">10.1145/3588432.3591546</a>.
  short: J. Condor, M. Piovarci, B. Bickel, P. Didyk, in:, SIGGRAPH ’23 Conference
    Proceedings, Association for Computing Machinery, 2023.
conference:
  end_date: 2023-08-10
  location: Los Angeles, CA, United States
  name: 'SIGGRAPH: Computer Graphics and Interactive Techniques Conference'
  start_date: 2023-08-06
date_created: 2023-05-16T09:34:13Z
date_published: 2023-07-23T00:00:00Z
date_updated: 2024-02-28T12:52:04Z
day: '23'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1145/3588432.3591546
external_id:
  isi:
  - '001117690500021'
file:
- access_level: open_access
  checksum: 84a437739af5d46507928939b20c0c28
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T09:32:50Z
  date_updated: 2023-05-16T09:32:50Z
  file_id: '12983'
  file_name: Condor2023_supplemental.pdf
  file_size: 42323971
  relation: main_file
  success: 1
- access_level: open_access
  checksum: 0f5c8b242e8e7c153c04888c4d0c6f37
  content_type: application/pdf
  creator: dernst
  date_created: 2024-01-29T10:14:10Z
  date_updated: 2024-01-29T10:14:10Z
  file_id: '14893'
  file_name: 2023_Siggraph_Condor.pdf
  file_size: 26079404
  relation: main_file
  success: 1
file_date_updated: 2024-01-29T10:14:10Z
has_accepted_license: '1'
isi: 1
keyword:
- color
- gloss
- perception
- color compensation
- color management
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
publication: SIGGRAPH ’23 Conference Proceedings
publication_identifier:
  isbn:
  - '9798400701597'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: Gloss-aware color correction for 3D printing
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2023'
...
---
_id: '12984'
abstract:
- lang: eng
  text: Tattoos are a highly popular medium, with both artistic and medical applications.
    Although the mechanical process of tattoo application has evolved historically,
    the results are reliant on the artisanal skill of the artist. This can be especially
    challenging for some skin tones, or in cases where artists lack experience. We
    provide the first systematic overview of tattooing as a computational fabrication
    technique. We built an automated tattooing rig and a recipe for the creation of
    silicone sheets mimicking realistic skin tones, which allowed us to create an
    accurate model predicting tattoo appearance. This enables several exciting applications
    including tattoo previewing, color retargeting, novel ink spectra optimization,
    color-accurate prosthetics, and more.
acknowledged_ssus:
- _id: M-Shop
acknowledgement: We thank Todor Asenov and the Miba Machine Shop for their help in
  assembling the tattoo machine and manufacturing the substrates. We thank Geysler
  Rodrigues for the insightful discussions on tattooing practices from a professional
  artist's perspective. We thank Maria Fernanda Portugal for sharing a doctor's perspective
  on medical applications of tattoos. This work is graciously supported by the FWF
  Lise Meitner (Grant M 3319).
article_number: '67'
article_processing_charge: No
article_type: original
author:
- first_name: Michael
  full_name: Piovarci, Michael
  id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
  last_name: Piovarci
  orcid: 0000-0002-5062-4474
- first_name: Alexandre
  full_name: Chapiro, Alexandre
  last_name: Chapiro
- first_name: Bernd
  full_name: Bickel, Bernd
  id: 49876194-F248-11E8-B48F-1D18A9856A87
  last_name: Bickel
  orcid: 0000-0001-6511-9385
citation:
  ama: 'Piovarci M, Chapiro A, Bickel B. Skin-Screen: A computational fabrication
    framework for color tattoos. <i>Transactions on Graphics</i>. 2023;42(4). doi:<a
    href="https://doi.org/10.1145/3592432">10.1145/3592432</a>'
  apa: 'Piovarci, M., Chapiro, A., &#38; Bickel, B. (2023). Skin-Screen: A computational
    fabrication framework for color tattoos. <i>Transactions on Graphics</i>. Los
    Angeles, CA, United States: Association for Computing Machinery. <a href="https://doi.org/10.1145/3592432">https://doi.org/10.1145/3592432</a>'
  chicago: 'Piovarci, Michael, Alexandre Chapiro, and Bernd Bickel. “Skin-Screen:
    A Computational Fabrication Framework for Color Tattoos.” <i>Transactions on Graphics</i>.
    Association for Computing Machinery, 2023. <a href="https://doi.org/10.1145/3592432">https://doi.org/10.1145/3592432</a>.'
  ieee: 'M. Piovarci, A. Chapiro, and B. Bickel, “Skin-Screen: A computational fabrication
    framework for color tattoos,” <i>Transactions on Graphics</i>, vol. 42, no. 4.
    Association for Computing Machinery, 2023.'
  ista: 'Piovarci M, Chapiro A, Bickel B. 2023. Skin-Screen: A computational fabrication
    framework for color tattoos. Transactions on Graphics. 42(4), 67.'
  mla: 'Piovarci, Michael, et al. “Skin-Screen: A Computational Fabrication Framework
    for Color Tattoos.” <i>Transactions on Graphics</i>, vol. 42, no. 4, 67, Association
    for Computing Machinery, 2023, doi:<a href="https://doi.org/10.1145/3592432">10.1145/3592432</a>.'
  short: M. Piovarci, A. Chapiro, B. Bickel, Transactions on Graphics 42 (2023).
conference:
  end_date: 2023-08-10
  location: Los Angeles, CA, United States
  name: 'SIGGRAPH: Computer Graphics and Interactive Techniques Conference'
  start_date: 2023-08-06
date_created: 2023-05-16T09:39:14Z
date_published: 2023-07-26T00:00:00Z
date_updated: 2024-01-29T10:27:23Z
day: '26'
ddc:
- '004'
department:
- _id: BeBi
doi: 10.1145/3592432
external_id:
  isi:
  - '001044671300033'
file:
- access_level: open_access
  checksum: 5f0a6867689e025a661bd0b4fd90b821
  content_type: application/pdf
  creator: mpiovarc
  date_created: 2023-05-16T09:38:25Z
  date_updated: 2023-05-16T09:38:25Z
  file_id: '12985'
  file_name: Piovarci2023.pdf
  file_size: 30817343
  relation: main_file
  success: 1
file_date_updated: 2023-05-16T09:38:25Z
has_accepted_license: '1'
intvolume: '        42'
isi: 1
issue: '4'
keyword:
- appearance
- modeling
- reproduction
- tattoo
- skin color
- gamut mapping
- ink-optimization
- prosthetic
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: eb901961-77a9-11ec-83b8-f5c883a62027
  grant_number: M03319
  name: Perception-Aware Appearance Fabrication
publication: Transactions on Graphics
publication_identifier:
  eissn:
  - 1557-7368
  issn:
  - 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: 'Skin-Screen: A computational fabrication framework for color tattoos'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 42
year: '2023'
...
---
_id: '13033'
abstract:
- lang: eng
  text: Current methods for assessing cell proliferation in 3D scaffolds rely on changes
    in metabolic activity or total DNA, however, direct quantification of cell number
    in 3D scaffolds remains a challenge. To address this issue, we developed an unbiased
    stereology approach that uses systematic-random sampling and thin focal-plane
    optical sectioning of the scaffolds followed by estimation of total cell number
    (StereoCount). This approach was validated against an indirect method for measuring
    the total DNA (DNA content); and the Bürker counting chamber, the current reference
    method for quantifying cell number. We assessed the total cell number for cell
    seeding density (cells per unit volume) across four values and compared the methods
    in terms of accuracy, ease-of-use and time demands. The accuracy of StereoCount
    markedly outperformed the DNA content for cases with ~ 10,000 and ~ 125,000 cells/scaffold.
    For cases with ~ 250,000 and ~ 375,000 cells/scaffold both StereoCount and DNA
    content showed lower accuracy than the Bürker but did not differ from each other.
    In terms of ease-of-use, there was a strong advantage for the StereoCount due
    to output in terms of absolute cell numbers along with the possibility for an
    overview of cell distribution and future use of automation for high throughput
    analysis. Taking together, the StereoCount method is an efficient approach for
    direct cell quantification in 3D collagen scaffolds. Its major benefit is that
    automated StereoCount could accelerate research using 3D scaffolds focused on
    drug discovery for a wide variety of human diseases.
acknowledgement: The study was supported by Project No. CZ.02.1.01/0.0/0.0/16_019/0000787
  “Fighting INfectious Diseases”, awarded by the MEYS CR, financed from EFRR, by the
  Cooperatio Program, research area DIAG and research area MED/DIAG, by the profiBONE
  project (TO01000309) benefitting from a € (1.433.000) grant from Iceland, Liechtenstein
  and Norway through the EEA Grants and the Technology Agency of the Czech Republic
  and by a Grant (#1926990) to PRM and SRC Biosciences from the National Science Foundation
  (U.S. Public Health Service). The authors acknowledge the invaluable assistance
  provided by Iveta Paurova via her support in terms of the provision of laboratory
  services.
article_number: '7959'
article_processing_charge: No
article_type: original
author:
- first_name: Anna
  full_name: Zavadakova, Anna
  last_name: Zavadakova
- first_name: Lucie
  full_name: Vistejnova, Lucie
  last_name: Vistejnova
- first_name: Tereza
  full_name: Belinova, Tereza
  id: 0bf89b6a-d28b-11eb-8bd6-f43768e4d368
  last_name: Belinova
- first_name: Filip
  full_name: Tichanek, Filip
  last_name: Tichanek
- first_name: Dagmar
  full_name: Bilikova, Dagmar
  last_name: Bilikova
- first_name: Peter R.
  full_name: Mouton, Peter R.
  last_name: Mouton
citation:
  ama: Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR.
    Novel stereological method for estimation of cell counts in 3D collagen scaffolds.
    <i>Scientific Reports</i>. 2023;13(1). doi:<a href="https://doi.org/10.1038/s41598-023-35162-z">10.1038/s41598-023-35162-z</a>
  apa: Zavadakova, A., Vistejnova, L., Belinova, T., Tichanek, F., Bilikova, D., &#38;
    Mouton, P. R. (2023). Novel stereological method for estimation of cell counts
    in 3D collagen scaffolds. <i>Scientific Reports</i>. Springer Nature. <a href="https://doi.org/10.1038/s41598-023-35162-z">https://doi.org/10.1038/s41598-023-35162-z</a>
  chicago: Zavadakova, Anna, Lucie Vistejnova, Tereza Belinova, Filip Tichanek, Dagmar
    Bilikova, and Peter R. Mouton. “Novel Stereological Method for Estimation of Cell
    Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>. Springer Nature,
    2023. <a href="https://doi.org/10.1038/s41598-023-35162-z">https://doi.org/10.1038/s41598-023-35162-z</a>.
  ieee: A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, and P.
    R. Mouton, “Novel stereological method for estimation of cell counts in 3D collagen
    scaffolds,” <i>Scientific Reports</i>, vol. 13, no. 1. Springer Nature, 2023.
  ista: Zavadakova A, Vistejnova L, Belinova T, Tichanek F, Bilikova D, Mouton PR.
    2023. Novel stereological method for estimation of cell counts in 3D collagen
    scaffolds. Scientific Reports. 13(1), 7959.
  mla: Zavadakova, Anna, et al. “Novel Stereological Method for Estimation of Cell
    Counts in 3D Collagen Scaffolds.” <i>Scientific Reports</i>, vol. 13, no. 1, 7959,
    Springer Nature, 2023, doi:<a href="https://doi.org/10.1038/s41598-023-35162-z">10.1038/s41598-023-35162-z</a>.
  short: A. Zavadakova, L. Vistejnova, T. Belinova, F. Tichanek, D. Bilikova, P.R.
    Mouton, Scientific Reports 13 (2023).
date_created: 2023-05-19T11:12:25Z
date_published: 2023-05-17T00:00:00Z
date_updated: 2023-08-01T14:46:06Z
day: '17'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1038/s41598-023-35162-z
external_id:
  isi:
  - '000995271600104'
file:
- access_level: open_access
  checksum: 8c1b769693ff4288df8376e59ad1176d
  content_type: application/pdf
  creator: dernst
  date_created: 2023-05-22T07:57:37Z
  date_updated: 2023-05-22T07:57:37Z
  file_id: '13047'
  file_name: 2023_ScientificReports_Zavadakova.pdf
  file_size: 3055077
  relation: main_file
  success: 1
file_date_updated: 2023-05-22T07:57:37Z
has_accepted_license: '1'
intvolume: '        13'
isi: 1
issue: '1'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_identifier:
  issn:
  - 2045-2322
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  link:
  - relation: erratum
    url: https://doi.org/10.1038/s41598-023-37265-z
scopus_import: '1'
status: public
title: Novel stereological method for estimation of cell counts in 3D collagen scaffolds
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13
year: '2023'
...
---
_id: '13039'
abstract:
- lang: eng
  text: We calculate reflectivities of dynamically compressed water, water-ethanol
    mixtures, and ammonia at infrared and optical wavelengths with density functional
    theory and molecular dynamics simulations. The influence of the exchange-correlation
    functional on the results is examined in detail. Our findings indicate that the
    consistent use of the HSE hybrid functional reproduces experimental results much
    better than the commonly used PBE functional. The HSE functional offers not only
    a more accurate description of the electronic band gap but also shifts the onset
    of molecular dissociation in the molecular dynamics simulations to significantly
    higher pressures. We also highlight the importance of using accurate reference
    standards in reflectivity experiments and reanalyze infrared and optical reflectivity
    data from recent experiments. Thus, our combined theoretical and experimental
    work explains and resolves lingering discrepancies between calculations and measurements
    for the investigated molecular substances under shock compression.
acknowledgement: 'We thank R. Redmer for helpful discussions. M.F. acknowledges support
  by the Deutsche Forschungsgemeinschaft (DFG) within the FOR 2440. M.B. gratefully
  acknowledges support by the European Horizon 2020 programme within the Marie Skłodowska-Curie
  actions (xICE Grant No. 894725) and the NOMIS foundation. A.R. and J.-A.H. acknowledge
  support form the French National Research Agency (ANR) through the projects POMPEI
  (Grant No. ANR-16-CE31-0008) and SUPER-ICES (Grant No. ANR-15-CE30-008-01). The
  ab initio calculations were performed at the NorthGerman Supercomputing Alliance
  (HLRN) facilities. '
article_number: '134109'
article_processing_charge: No
article_type: original
author:
- first_name: Martin
  full_name: French, Martin
  last_name: French
- first_name: Mandy
  full_name: Bethkenhagen, Mandy
  id: 201939f4-803f-11ed-ab7e-d8da4bd1517f
  last_name: Bethkenhagen
  orcid: 0000-0002-1838-2129
- first_name: Alessandra
  full_name: Ravasio, Alessandra
  last_name: Ravasio
- first_name: Jean Alexis
  full_name: Hernandez, Jean Alexis
  last_name: Hernandez
citation:
  ama: French M, Bethkenhagen M, Ravasio A, Hernandez JA. Ab initio calculation of
    the reflectivity of molecular fluids under shock compression. <i>Physical Review
    B</i>. 2023;107(13). doi:<a href="https://doi.org/10.1103/PhysRevB.107.134109">10.1103/PhysRevB.107.134109</a>
  apa: French, M., Bethkenhagen, M., Ravasio, A., &#38; Hernandez, J. A. (2023). Ab
    initio calculation of the reflectivity of molecular fluids under shock compression.
    <i>Physical Review B</i>. American Physical Society. <a href="https://doi.org/10.1103/PhysRevB.107.134109">https://doi.org/10.1103/PhysRevB.107.134109</a>
  chicago: French, Martin, Mandy Bethkenhagen, Alessandra Ravasio, and Jean Alexis
    Hernandez. “Ab Initio Calculation of the Reflectivity of Molecular Fluids under
    Shock Compression.” <i>Physical Review B</i>. American Physical Society, 2023.
    <a href="https://doi.org/10.1103/PhysRevB.107.134109">https://doi.org/10.1103/PhysRevB.107.134109</a>.
  ieee: M. French, M. Bethkenhagen, A. Ravasio, and J. A. Hernandez, “Ab initio calculation
    of the reflectivity of molecular fluids under shock compression,” <i>Physical
    Review B</i>, vol. 107, no. 13. American Physical Society, 2023.
  ista: French M, Bethkenhagen M, Ravasio A, Hernandez JA. 2023. Ab initio calculation
    of the reflectivity of molecular fluids under shock compression. Physical Review
    B. 107(13), 134109.
  mla: French, Martin, et al. “Ab Initio Calculation of the Reflectivity of Molecular
    Fluids under Shock Compression.” <i>Physical Review B</i>, vol. 107, no. 13, 134109,
    American Physical Society, 2023, doi:<a href="https://doi.org/10.1103/PhysRevB.107.134109">10.1103/PhysRevB.107.134109</a>.
  short: M. French, M. Bethkenhagen, A. Ravasio, J.A. Hernandez, Physical Review B
    107 (2023).
date_created: 2023-05-21T22:01:04Z
date_published: 2023-04-01T00:00:00Z
date_updated: 2023-08-01T14:45:25Z
day: '01'
department:
- _id: BiCh
doi: 10.1103/PhysRevB.107.134109
external_id:
  isi:
  - '000974672600001'
intvolume: '       107'
isi: 1
issue: '13'
language:
- iso: eng
month: '04'
oa_version: None
publication: Physical Review B
publication_identifier:
  eissn:
  - 2469-9969
  issn:
  - 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ab initio calculation of the reflectivity of molecular fluids under shock compression
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 107
year: '2023'
...
---
_id: '13041'
abstract:
- lang: eng
  text: A series of triarylamines was synthesised and screened for their suitability
    as catholytes in redox flow batteries using cyclic voltammetry (CV). Tris(4-aminophenyl)amine
    was found to be the strongest candidate. Solubility and initial electrochemical
    performance were promising; however, polymerisation was observed during electrochemical
    cycling leading to rapid capacity fade prescribed to a loss of accessible active
    material and the limitation of ion transport processes within the cell. A mixed
    electrolyte system of H3PO4 and HCl was found to inhibit polymerisation producing
    oligomers that consumed less active material reducing rates of degradation in
    the redox flow battery. Under these conditions Coulombic efficiency improved by
    over 4 %, the maximum number of cycles more than quadrupled and an additional
    theoretical capacity of 20 % was accessed. This paper is, to our knowledge, the
    first example of triarylamines as catholytes in all-aqueous redox flow batteries
    and emphasises the impact supporting electrolytes can have on electrochemical
    performance.
acknowledgement: The authors (N.L.F and R.B.J) would like to acknowledge the funding
  contributions of Shell and the EPRSC via I–Case studentships (grants no. EP/V519662/1
  and EP/R511870/1 respectively). T.I would like to thank the ERC advanced Investigator
  Grant for CPG (EC H2020 835073). Thank you to Zhen Wang from the University of Cambridge
  for measuring GPC, the Yusuf Hamied Department of Chemistry's mass spectrometry
  service for MS measurements and analysis and Dr Andrew Bond from the University
  of Cambridge for XRD measurement and analysis.
article_number: e202300128
article_processing_charge: Yes (in subscription journal)
article_type: original
author:
- first_name: Nadia L.
  full_name: Farag, Nadia L.
  last_name: Farag
- first_name: Rajesh B
  full_name: Jethwa, Rajesh B
  id: 4cc538d5-803f-11ed-ab7e-8139573aad8f
  last_name: Jethwa
  orcid: 0000-0002-0404-4356
- first_name: Alice E.
  full_name: Beardmore, Alice E.
  last_name: Beardmore
- first_name: Teresa
  full_name: Insinna, Teresa
  last_name: Insinna
- first_name: Christopher A.
  full_name: O'Keefe, Christopher A.
  last_name: O'Keefe
- first_name: Peter A.A.
  full_name: Klusener, Peter A.A.
  last_name: Klusener
- first_name: Clare P.
  full_name: Grey, Clare P.
  last_name: Grey
- first_name: Dominic S.
  full_name: Wright, Dominic S.
  last_name: Wright
citation:
  ama: Farag NL, Jethwa RB, Beardmore AE, et al. Triarylamines as catholytes in aqueous
    organic redox flow batteries. <i>ChemSusChem</i>. 2023;16(13). doi:<a href="https://doi.org/10.1002/cssc.202300128">10.1002/cssc.202300128</a>
  apa: Farag, N. L., Jethwa, R. B., Beardmore, A. E., Insinna, T., O’Keefe, C. A.,
    Klusener, P. A. A., … Wright, D. S. (2023). Triarylamines as catholytes in aqueous
    organic redox flow batteries. <i>ChemSusChem</i>. Wiley. <a href="https://doi.org/10.1002/cssc.202300128">https://doi.org/10.1002/cssc.202300128</a>
  chicago: Farag, Nadia L., Rajesh B Jethwa, Alice E. Beardmore, Teresa Insinna, Christopher
    A. O’Keefe, Peter A.A. Klusener, Clare P. Grey, and Dominic S. Wright. “Triarylamines
    as Catholytes in Aqueous Organic Redox Flow Batteries.” <i>ChemSusChem</i>. Wiley,
    2023. <a href="https://doi.org/10.1002/cssc.202300128">https://doi.org/10.1002/cssc.202300128</a>.
  ieee: N. L. Farag <i>et al.</i>, “Triarylamines as catholytes in aqueous organic
    redox flow batteries,” <i>ChemSusChem</i>, vol. 16, no. 13. Wiley, 2023.
  ista: Farag NL, Jethwa RB, Beardmore AE, Insinna T, O’Keefe CA, Klusener PAA, Grey
    CP, Wright DS. 2023. Triarylamines as catholytes in aqueous organic redox flow
    batteries. ChemSusChem. 16(13), e202300128.
  mla: Farag, Nadia L., et al. “Triarylamines as Catholytes in Aqueous Organic Redox
    Flow Batteries.” <i>ChemSusChem</i>, vol. 16, no. 13, e202300128, Wiley, 2023,
    doi:<a href="https://doi.org/10.1002/cssc.202300128">10.1002/cssc.202300128</a>.
  short: N.L. Farag, R.B. Jethwa, A.E. Beardmore, T. Insinna, C.A. O’Keefe, P.A.A.
    Klusener, C.P. Grey, D.S. Wright, ChemSusChem 16 (2023).
date_created: 2023-05-21T22:01:05Z
date_published: 2023-07-06T00:00:00Z
date_updated: 2023-11-14T11:28:23Z
day: '06'
ddc:
- '540'
department:
- _id: StFr
doi: 10.1002/cssc.202300128
external_id:
  isi:
  - '000985051300001'
  pmid:
  - '36970847'
file:
- access_level: open_access
  checksum: efa0713289995af83a2147b3e8e1d6a6
  content_type: application/pdf
  creator: dernst
  date_created: 2023-11-14T11:27:16Z
  date_updated: 2023-11-14T11:27:16Z
  file_id: '14532'
  file_name: 2023_ChemSusChem_Farag.pdf
  file_size: 1168683
  relation: main_file
  success: 1
file_date_updated: 2023-11-14T11:27:16Z
has_accepted_license: '1'
intvolume: '        16'
isi: 1
issue: '13'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
publication: ChemSusChem
publication_identifier:
  eissn:
  - 1864-564X
  issn:
  - 1864-5631
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Triarylamines as catholytes in aqueous organic redox flow batteries
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2023'
...
