---
_id: '1266'
abstract:
- lang: eng
text: 'Cortical networks exhibit ‘global oscillations’, in which neural spike times
are entrained to an underlying oscillatory rhythm, but where individual neurons
fire irregularly, on only a fraction of cycles. While the network dynamics underlying
global oscillations have been well characterised, their function is debated. Here,
we show that such global oscillations are a direct consequence of optimal efficient
coding in spiking networks with synaptic delays and noise. To avoid firing unnecessary
spikes, neurons need to share information about the network state. Ideally, membrane
potentials should be strongly correlated and reflect a ‘prediction error’ while
the spikes themselves are uncorrelated and occur rarely. We show that the most
efficient representation is when: (i) spike times are entrained to a global Gamma
rhythm (implying a consistent representation of the error); but (ii) few neurons
fire on each cycle (implying high efficiency), while (iii) excitation and inhibition
are tightly balanced. This suggests that cortical networks exhibiting such dynamics
are tuned to achieve a maximally efficient population code.'
acknowledgement: Boris Gutkin acknowledges funding by the Russian Academic Excellence
Project '5-100’.
article_number: e13824
author:
- first_name: Matthew J
full_name: Chalk, Matthew J
id: 2BAAC544-F248-11E8-B48F-1D18A9856A87
last_name: Chalk
orcid: 0000-0001-7782-4436
- first_name: Boris
full_name: Gutkin, Boris
last_name: Gutkin
- first_name: Sophie
full_name: Denève, Sophie
last_name: Denève
citation:
ama: Chalk MJ, Gutkin B, Denève S. Neural oscillations as a signature of efficient
coding in the presence of synaptic delays. eLife. 2016;5(2016JULY). doi:10.7554/eLife.13824
apa: Chalk, M. J., Gutkin, B., & Denève, S. (2016). Neural oscillations as a
signature of efficient coding in the presence of synaptic delays. ELife.
eLife Sciences Publications. https://doi.org/10.7554/eLife.13824
chicago: Chalk, Matthew J, Boris Gutkin, and Sophie Denève. “Neural Oscillations
as a Signature of Efficient Coding in the Presence of Synaptic Delays.” ELife.
eLife Sciences Publications, 2016. https://doi.org/10.7554/eLife.13824.
ieee: M. J. Chalk, B. Gutkin, and S. Denève, “Neural oscillations as a signature
of efficient coding in the presence of synaptic delays,” eLife, vol. 5,
no. 2016JULY. eLife Sciences Publications, 2016.
ista: Chalk MJ, Gutkin B, Denève S. 2016. Neural oscillations as a signature of
efficient coding in the presence of synaptic delays. eLife. 5(2016JULY), e13824.
mla: Chalk, Matthew J., et al. “Neural Oscillations as a Signature of Efficient
Coding in the Presence of Synaptic Delays.” ELife, vol. 5, no. 2016JULY,
e13824, eLife Sciences Publications, 2016, doi:10.7554/eLife.13824.
short: M.J. Chalk, B. Gutkin, S. Denève, ELife 5 (2016).
date_created: 2018-12-11T11:51:02Z
date_published: 2016-07-01T00:00:00Z
date_updated: 2021-01-12T06:49:30Z
day: '01'
ddc:
- '571'
department:
- _id: GaTk
doi: 10.7554/eLife.13824
file:
- access_level: open_access
checksum: dc52d967dc76174477bb258d84be2899
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:20Z
date_updated: 2020-07-14T12:44:42Z
file_id: '4874'
file_name: IST-2016-700-v1+1_e13824-download.pdf
file_size: 2819055
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 5'
issue: 2016JULY
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '6056'
pubrep_id: '700'
quality_controlled: '1'
scopus_import: 1
status: public
title: Neural oscillations as a signature of efficient coding in the presence of synaptic
delays
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2016'
...
---
_id: '1267'
abstract:
- lang: eng
text: We give a simplified proof of the nonexistence of large nuclei in the liquid
drop model and provide an explicit bound. Our bound is within a factor of 2.3
of the conjectured value and seems to be the first quantitative result.
acknowledgement: "Open access funding provided by Institute of Science and Technology
Austria.\r\n"
author:
- first_name: Rupert
full_name: Frank, Rupert
last_name: Frank
- first_name: Rowan
full_name: Killip, Rowan
last_name: Killip
- first_name: Phan
full_name: Nam, Phan
id: 404092F4-F248-11E8-B48F-1D18A9856A87
last_name: Nam
citation:
ama: Frank R, Killip R, Nam P. Nonexistence of large nuclei in the liquid drop model.
Letters in Mathematical Physics. 2016;106(8):1033-1036. doi:10.1007/s11005-016-0860-8
apa: Frank, R., Killip, R., & Nam, P. (2016). Nonexistence of large nuclei in
the liquid drop model. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-016-0860-8
chicago: Frank, Rupert, Rowan Killip, and Phan Nam. “Nonexistence of Large Nuclei
in the Liquid Drop Model.” Letters in Mathematical Physics. Springer, 2016.
https://doi.org/10.1007/s11005-016-0860-8.
ieee: R. Frank, R. Killip, and P. Nam, “Nonexistence of large nuclei in the liquid
drop model,” Letters in Mathematical Physics, vol. 106, no. 8. Springer,
pp. 1033–1036, 2016.
ista: Frank R, Killip R, Nam P. 2016. Nonexistence of large nuclei in the liquid
drop model. Letters in Mathematical Physics. 106(8), 1033–1036.
mla: Frank, Rupert, et al. “Nonexistence of Large Nuclei in the Liquid Drop Model.”
Letters in Mathematical Physics, vol. 106, no. 8, Springer, 2016, pp. 1033–36,
doi:10.1007/s11005-016-0860-8.
short: R. Frank, R. Killip, P. Nam, Letters in Mathematical Physics 106 (2016) 1033–1036.
date_created: 2018-12-11T11:51:02Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2021-01-12T06:49:30Z
day: '01'
ddc:
- '510'
- '539'
department:
- _id: RoSe
doi: 10.1007/s11005-016-0860-8
file:
- access_level: open_access
checksum: d740a6a226e0f5f864f40e3e269d3cc0
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:09Z
date_updated: 2020-07-14T12:44:42Z
file_id: '4863'
file_name: IST-2016-698-v1+1_s11005-016-0860-8.pdf
file_size: 349464
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 106'
issue: '8'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 1033 - 1036
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27533_N27
name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_status: published
publisher: Springer
publist_id: '6054'
pubrep_id: '698'
quality_controlled: '1'
scopus_import: 1
status: public
title: Nonexistence of large nuclei in the liquid drop model
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 106
year: '2016'
...
---
_id: '1268'
acknowledgement: We would like to thank Mihai Netea for inviting us to contribute
to this Theme Issue.
author:
- first_name: Barbara
full_name: Milutinovic, Barbara
id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
last_name: Milutinovic
orcid: 0000-0002-8214-4758
- first_name: Joachim
full_name: Kurtz, Joachim
last_name: Kurtz
citation:
ama: Milutinovic B, Kurtz J. Immune memory in invertebrates. Seminars in Immunology.
2016;28(4):328-342. doi:10.1016/j.smim.2016.05.004
apa: Milutinovic, B., & Kurtz, J. (2016). Immune memory in invertebrates. Seminars
in Immunology. Academic Press. https://doi.org/10.1016/j.smim.2016.05.004
chicago: Milutinovic, Barbara, and Joachim Kurtz. “Immune Memory in Invertebrates.”
Seminars in Immunology. Academic Press, 2016. https://doi.org/10.1016/j.smim.2016.05.004.
ieee: B. Milutinovic and J. Kurtz, “Immune memory in invertebrates,” Seminars
in Immunology, vol. 28, no. 4. Academic Press, pp. 328–342, 2016.
ista: Milutinovic B, Kurtz J. 2016. Immune memory in invertebrates. Seminars in
Immunology. 28(4), 328–342.
mla: Milutinovic, Barbara, and Joachim Kurtz. “Immune Memory in Invertebrates.”
Seminars in Immunology, vol. 28, no. 4, Academic Press, 2016, pp. 328–42,
doi:10.1016/j.smim.2016.05.004.
short: B. Milutinovic, J. Kurtz, Seminars in Immunology 28 (2016) 328–342.
date_created: 2018-12-11T11:51:03Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2021-01-12T06:49:30Z
day: '01'
department:
- _id: SyCr
doi: 10.1016/j.smim.2016.05.004
intvolume: ' 28'
issue: '4'
language:
- iso: eng
month: '08'
oa_version: None
page: 328 - 342
publication: Seminars in Immunology
publication_status: published
publisher: Academic Press
publist_id: '6053'
quality_controlled: '1'
scopus_import: 1
status: public
title: Immune memory in invertebrates
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2016'
...
---
_id: '1269'
abstract:
- lang: eng
text: Plants are continuously exposed to a myriad of external signals such as fluctuating
nutrients availability, drought, heat, cold, high salinity, or pathogen/pest attacks
that can severely affect their development, growth, and fertility. As sessile
organisms, plants must therefore be able to sense and rapidly react to these external
inputs, activate efficient responses, and adjust development to changing conditions.
In recent years, significant progress has been made towards understanding the
molecular mechanisms underlying the intricate and complex communication between
plants and the environment. It is now becoming increasingly evident that hormones
have an important regulatory role in plant adaptation and defense mechanisms.
author:
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Benková E. Plant hormones in interactions with the environment. Plant Molecular
Biology. 2016;91(6):597. doi:10.1007/s11103-016-0501-8
apa: Benková, E. (2016). Plant hormones in interactions with the environment. Plant
Molecular Biology. Springer. https://doi.org/10.1007/s11103-016-0501-8
chicago: Benková, Eva. “Plant Hormones in Interactions with the Environment.” Plant
Molecular Biology. Springer, 2016. https://doi.org/10.1007/s11103-016-0501-8.
ieee: E. Benková, “Plant hormones in interactions with the environment,” Plant
Molecular Biology, vol. 91, no. 6. Springer, p. 597, 2016.
ista: Benková E. 2016. Plant hormones in interactions with the environment. Plant
Molecular Biology. 91(6), 597.
mla: Benková, Eva. “Plant Hormones in Interactions with the Environment.” Plant
Molecular Biology, vol. 91, no. 6, Springer, 2016, p. 597, doi:10.1007/s11103-016-0501-8.
short: E. Benková, Plant Molecular Biology 91 (2016) 597.
date_created: 2018-12-11T11:51:03Z
date_published: 2016-08-01T00:00:00Z
date_updated: 2021-01-12T06:49:31Z
day: '01'
ddc:
- '581'
department:
- _id: EvBe
doi: 10.1007/s11103-016-0501-8
file:
- access_level: open_access
checksum: 0ffb7a15c5336b3a55248cc67021a825
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:18:28Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5349'
file_name: IST-2016-697-v1+1_s11103-016-0501-8.pdf
file_size: 297282
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 91'
issue: '6'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '597'
publication: Plant Molecular Biology
publication_status: published
publisher: Springer
publist_id: '6052'
pubrep_id: '697'
quality_controlled: '1'
scopus_import: 1
status: public
title: Plant hormones in interactions with the environment
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 91
year: '2016'
...
---
_id: '1270'
abstract:
- lang: eng
text: A crucial step in the early development of multicellular organisms involves
the establishment of spatial patterns of gene expression which later direct proliferating
cells to take on different cell fates. These patterns enable the cells to infer
their global position within a tissue or an organism by reading out local gene
expression levels. The patterning system is thus said to encode positional information,
a concept that was formalized recently in the framework of information theory.
Here we introduce a toy model of patterning in one spatial dimension, which can
be seen as an extension of Wolpert's paradigmatic "French Flag" model,
to patterning by several interacting, spatially coupled genes subject to intrinsic
and extrinsic noise. Our model, a variant of an Ising spin system, allows us to
systematically explore expression patterns that optimally encode positional information.
We find that optimal patterning systems use positional cues, as in the French
Flag model, together with gene-gene interactions to generate combinatorial codes
for position which we call "Counter" patterns. Counter patterns can
also be stabilized against noise and variations in system size or morphogen dosage
by longer-range spatial interactions of the type invoked in the Turing model.
The simple setup proposed here qualitatively captures many of the experimentally
observed properties of biological patterning systems and allows them to be studied
in a single, theoretically consistent framework.
acknowledgement: The authors would like to thank Thomas Sokolowski and Filipe Tostevin
for helpful discussions. PH and UG were funded by the German Excellence Initiative
via the program "Nanosystems Initiative Munich" (https://www.nano-initiative-munich.de)
and the German Research Foundation via the SFB 1032 "Nanoagents for Spatiotemporal
Control of Molecular and Cellular Reactions" (http://www.sfb1032.physik.uni-muenchen.de).
GT was funded by the Austrian Science Fund (FWF P 28844) (http://www.fwf.ac.at).
article_number: e0163628
author:
- first_name: Patrick
full_name: Hillenbrand, Patrick
last_name: Hillenbrand
- first_name: Ulrich
full_name: Gerland, Ulrich
last_name: Gerland
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
citation:
ama: 'Hillenbrand P, Gerland U, Tkačik G. Beyond the French flag model: Exploiting
spatial and gene regulatory interactions for positional information. PLoS One.
2016;11(9). doi:10.1371/journal.pone.0163628'
apa: 'Hillenbrand, P., Gerland, U., & Tkačik, G. (2016). Beyond the French flag
model: Exploiting spatial and gene regulatory interactions for positional information.
PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0163628'
chicago: 'Hillenbrand, Patrick, Ulrich Gerland, and Gašper Tkačik. “Beyond the French
Flag Model: Exploiting Spatial and Gene Regulatory Interactions for Positional
Information.” PLoS One. Public Library of Science, 2016. https://doi.org/10.1371/journal.pone.0163628.'
ieee: 'P. Hillenbrand, U. Gerland, and G. Tkačik, “Beyond the French flag model:
Exploiting spatial and gene regulatory interactions for positional information,”
PLoS One, vol. 11, no. 9. Public Library of Science, 2016.'
ista: 'Hillenbrand P, Gerland U, Tkačik G. 2016. Beyond the French flag model: Exploiting
spatial and gene regulatory interactions for positional information. PLoS One.
11(9), e0163628.'
mla: 'Hillenbrand, Patrick, et al. “Beyond the French Flag Model: Exploiting Spatial
and Gene Regulatory Interactions for Positional Information.” PLoS One,
vol. 11, no. 9, e0163628, Public Library of Science, 2016, doi:10.1371/journal.pone.0163628.'
short: P. Hillenbrand, U. Gerland, G. Tkačik, PLoS One 11 (2016).
date_created: 2018-12-11T11:51:03Z
date_published: 2016-09-27T00:00:00Z
date_updated: 2023-02-23T14:11:37Z
day: '27'
ddc:
- '571'
department:
- _id: GaTk
doi: 10.1371/journal.pone.0163628
file:
- access_level: open_access
checksum: 3d0d55d373096a033bd9cf79288c8586
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:47Z
date_updated: 2020-07-14T12:44:42Z
file_id: '4837'
file_name: IST-2016-696-v1+1_journal.pone.0163628.PDF
file_size: 4950415
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 11'
issue: '9'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 254E9036-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P28844-B27
name: Biophysics of information processing in gene regulation
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6050'
pubrep_id: '696'
quality_controlled: '1'
related_material:
record:
- id: '9869'
relation: research_data
status: public
- id: '9870'
relation: research_data
status: public
- id: '9871'
relation: research_data
status: public
scopus_import: 1
status: public
title: 'Beyond the French flag model: Exploiting spatial and gene regulatory interactions
for positional information'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2016'
...
---
_id: '1271'
abstract:
- lang: eng
text: 'Background: High directional persistence is often assumed to enhance the
efficiency of chemotactic migration. Yet, cells in vivo usually display meandering
trajectories with relatively low directional persistence, and the control and
function of directional persistence during cell migration in three-dimensional
environments are poorly understood. Results: Here, we use mesendoderm progenitors
migrating during zebrafish gastrulation as a model system to investigate the control
of directional persistence during migration in vivo. We show that progenitor cells
alternate persistent run phases with tumble phases that result in cell reorientation.
Runs are characterized by the formation of directed actin-rich protrusions and
tumbles by enhanced blebbing. Increasing the proportion of actin-rich protrusions
or blebs leads to longer or shorter run phases, respectively. Importantly, both
reducing and increasing run phases result in larger spatial dispersion of the
cells, indicative of reduced migration precision. A physical model quantitatively
recapitulating the migratory behavior of mesendoderm progenitors indicates that
the ratio of tumbling to run times, and thus the specific degree of directional
persistence of migration, are critical for optimizing migration precision. Conclusions:
Together, our experiments and model provide mechanistic insight into the control
of migration directionality for cells moving in three-dimensional environments
that combine different protrusion types, whereby the proportion of blebs to actin-rich
protrusions determines the directional persistence and precision of movement by
regulating the ratio of tumbling to run times.'
acknowledged_ssus:
- _id: LifeSc
acknowledgement: "We thank K. Lee, C. Norden, A. Webb, and the members of the Paluch
lab for\r\ncomments on the manuscript. We are grateful to P. Rørth and Peter Dieterich\r\nfor
discussions, S. Ares, Y. Arboleda-Estudillo and S. Schneider for technical help,\r\nM.
Biro for help with programming, and the BIOTEC/MPI-CBG and IST zebrafish\r\nand
imaging facilities for help and advice at various stages of this project. This work
was supported by the Max Planck Society, the Medical Research Council UK (core funding
to the MRC LMCB), and by grants from the Polish Ministry of Science and Higher Education
(454/N-MPG/2009/0) to EKP, the Deutsche Forschungsgemeinschaft (HE 3231/6-1 and
PA 1590/1-1) to CPH and EKP, a A*Star JCO career development award (12302FG010)
to WY and a Damon Runyon fellowship award to ADM (DRG 2157-12). This work was also
supported by the Francis Crick Institute which receives its core funding from Cancer
Research UK (FC001317), the UK Medical Research Council (FC001317), and the Wellcome
Trust (FC001317) to GS."
article_number: '74'
author:
- first_name: Alba
full_name: Diz Muñoz, Alba
last_name: Diz Muñoz
- first_name: Pawel
full_name: Romanczuk, Pawel
last_name: Romanczuk
- first_name: Weimiao
full_name: Yu, Weimiao
last_name: Yu
- first_name: Martin
full_name: Bergert, Martin
last_name: Bergert
- first_name: Kenzo
full_name: Ivanovitch, Kenzo
last_name: Ivanovitch
- first_name: Guillame
full_name: Salbreux, Guillame
last_name: Salbreux
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Ewa
full_name: Paluch, Ewa
last_name: Paluch
citation:
ama: Diz Muñoz A, Romanczuk P, Yu W, et al. Steering cell migration by alternating
blebs and actin-rich protrusions. BMC Biology. 2016;14(1). doi:10.1186/s12915-016-0294-x
apa: Diz Muñoz, A., Romanczuk, P., Yu, W., Bergert, M., Ivanovitch, K., Salbreux,
G., … Paluch, E. (2016). Steering cell migration by alternating blebs and actin-rich
protrusions. BMC Biology. BioMed Central. https://doi.org/10.1186/s12915-016-0294-x
chicago: Diz Muñoz, Alba, Pawel Romanczuk, Weimiao Yu, Martin Bergert, Kenzo Ivanovitch,
Guillame Salbreux, Carl-Philipp J Heisenberg, and Ewa Paluch. “Steering Cell Migration
by Alternating Blebs and Actin-Rich Protrusions.” BMC Biology. BioMed Central,
2016. https://doi.org/10.1186/s12915-016-0294-x.
ieee: A. Diz Muñoz et al., “Steering cell migration by alternating blebs
and actin-rich protrusions,” BMC Biology, vol. 14, no. 1. BioMed Central,
2016.
ista: Diz Muñoz A, Romanczuk P, Yu W, Bergert M, Ivanovitch K, Salbreux G, Heisenberg
C-PJ, Paluch E. 2016. Steering cell migration by alternating blebs and actin-rich
protrusions. BMC Biology. 14(1), 74.
mla: Diz Muñoz, Alba, et al. “Steering Cell Migration by Alternating Blebs and Actin-Rich
Protrusions.” BMC Biology, vol. 14, no. 1, 74, BioMed Central, 2016, doi:10.1186/s12915-016-0294-x.
short: A. Diz Muñoz, P. Romanczuk, W. Yu, M. Bergert, K. Ivanovitch, G. Salbreux,
C.-P.J. Heisenberg, E. Paluch, BMC Biology 14 (2016).
date_created: 2018-12-11T11:51:04Z
date_published: 2016-09-02T00:00:00Z
date_updated: 2021-01-12T06:49:32Z
day: '02'
ddc:
- '572'
- '576'
department:
- _id: CaHe
doi: 10.1186/s12915-016-0294-x
file:
- access_level: open_access
checksum: 0bfa484ac69a0a560fb9a4589aeda7f6
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:20Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5002'
file_name: IST-2016-695-v1+1_s12915-016-0294-x.pdf
file_size: 1875695
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 14'
issue: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 252064B8-B435-11E9-9278-68D0E5697425
grant_number: HE_3231/6-1
name: Analysis of the Formation and Function of Different Cell Protusion Types During
Cell Migration in Vivo
publication: BMC Biology
publication_status: published
publisher: BioMed Central
publist_id: '6049'
pubrep_id: '695'
quality_controlled: '1'
scopus_import: 1
status: public
title: Steering cell migration by alternating blebs and actin-rich protrusions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 14
year: '2016'
...
---
_id: '1272'
abstract:
- lang: eng
text: We study different means to extend offsetting based on skeletal structures
beyond the well-known constant-radius and mitered offsets supported by Voronoi
diagrams and straight skeletons, for which the orthogonal distance of offset elements
to their respective input elements is constant and uniform over all input elements.
Our main contribution is a new geometric structure, called variable-radius Voronoi
diagram, which supports the computation of variable-radius offsets, i.e., offsets
whose distance to the input is allowed to vary along the input. We discuss properties
of this structure and sketch a prototype implementation that supports the computation
of variable-radius offsets based on this new variant of Voronoi diagrams.
acknowledgement: 'This work was supported by Austrian Science Fund (FWF): P25816-N15.'
author:
- first_name: Martin
full_name: Held, Martin
last_name: Held
- first_name: Stefan
full_name: Huber, Stefan
id: 4700A070-F248-11E8-B48F-1D18A9856A87
last_name: Huber
orcid: 0000-0002-8871-5814
- first_name: Peter
full_name: Palfrader, Peter
last_name: Palfrader
citation:
ama: Held M, Huber S, Palfrader P. Generalized offsetting of planar structures using
skeletons. Computer-Aided Design and Applications. 2016;13(5):712-721.
doi:10.1080/16864360.2016.1150718
apa: Held, M., Huber, S., & Palfrader, P. (2016). Generalized offsetting of
planar structures using skeletons. Computer-Aided Design and Applications.
Taylor and Francis. https://doi.org/10.1080/16864360.2016.1150718
chicago: Held, Martin, Stefan Huber, and Peter Palfrader. “Generalized Offsetting
of Planar Structures Using Skeletons.” Computer-Aided Design and Applications.
Taylor and Francis, 2016. https://doi.org/10.1080/16864360.2016.1150718.
ieee: M. Held, S. Huber, and P. Palfrader, “Generalized offsetting of planar structures
using skeletons,” Computer-Aided Design and Applications, vol. 13, no.
5. Taylor and Francis, pp. 712–721, 2016.
ista: Held M, Huber S, Palfrader P. 2016. Generalized offsetting of planar structures
using skeletons. Computer-Aided Design and Applications. 13(5), 712–721.
mla: Held, Martin, et al. “Generalized Offsetting of Planar Structures Using Skeletons.”
Computer-Aided Design and Applications, vol. 13, no. 5, Taylor and Francis,
2016, pp. 712–21, doi:10.1080/16864360.2016.1150718.
short: M. Held, S. Huber, P. Palfrader, Computer-Aided Design and Applications 13
(2016) 712–721.
date_created: 2018-12-11T11:51:04Z
date_published: 2016-09-02T00:00:00Z
date_updated: 2021-01-12T06:49:32Z
day: '02'
ddc:
- '004'
- '516'
department:
- _id: HeEd
doi: 10.1080/16864360.2016.1150718
file:
- access_level: open_access
checksum: c746f3a48edb62b588d92ea5d0fd2c0e
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:16:20Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5206'
file_name: IST-2016-694-v1+1_Generalized_offsetting_of_planar_structures_using_skeletons.pdf
file_size: 1678369
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 13'
issue: '5'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 712 - 721
publication: Computer-Aided Design and Applications
publication_status: published
publisher: Taylor and Francis
publist_id: '6048'
pubrep_id: '694'
quality_controlled: '1'
scopus_import: 1
status: public
title: Generalized offsetting of planar structures using skeletons
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2016'
...
---
_id: '1273'
abstract:
- lang: eng
text: Lateral root primordia (LRP) originate from pericycle stem cells located deep
within parental root tissues. LRP emerge through overlying root tissues by inducing
auxin-dependent cell separation and hydraulic changes in adjacent cells. The auxin-inducible
auxin influx carrier LAX3 plays a key role concentrating this signal in cells
overlying LRP. Delimiting LAX3 expression to two adjacent cell files overlying
new LRP is crucial to ensure that auxin-regulated cell separation occurs solely
along their shared walls. Multiscale modeling has predicted that this highly focused
pattern of expression requires auxin to sequentially induce auxin efflux and influx
carriers PIN3 and LAX3, respectively. Consistent with model predictions, we report
that auxin-inducible LAX3 expression is regulated indirectly by AUXIN RESPONSE
FACTOR 7 (ARF7). Yeast one-hybrid screens revealed that the LAX3 promoter is bound
by the transcription factor LBD29, which is a direct target for regulation by
ARF7. Disrupting auxin-inducible LBD29 expression or expressing an LBD29-SRDX
transcriptional repressor phenocopied the lax3 mutant, resulting in delayed lateral
root emergence. We conclude that sequential LBD29 and LAX3 induction by auxin
is required to coordinate cell separation and organ emergence.
acknowledgement: "We acknowledge the support of glasshouse technicians at the University
of\r\nNottingham for help with plant growth and the Nottingham\r\nArabidopsis\r\nStock
Centre\r\n(NASC) for providing\r\nArabidopsis\r\nlines. This research was supported
by the Biotechnology and Biological Sciences Research Council (BBSRC) (to A.B. and
M.J.B.); the European Research Council (ERC) Advanced Grant SysArc (to B.S.) and
FUTUREROOTS (to M.J.B.); The Royal Society for University and Wolfson Research Fellowship
awards (to A.B. and M.J.B.); a Federation of European Biochemical Societies (FEBS)
Long-Term Fellowship (to B.P.); an Intra-European Fellowship for Career Development
under the 7th framework of the European Commission [IEF-2008-220506 to B.P.]; a
European Molecular Biology Organization (EMBO) Long-Term Fellowship (to B.P.); and
a European Reintegration Grant under the 7th framework of the European Commission
[ERG-2010-276662 to B.P.]; Interuniversity Attraction Poles Programme [initiated
by the Belgian Science Policy Office (Federaal Wetenschapsbeleid)] (to M.J.B.);
The Ministry of Education, Culture, Sports, Science, and Technology (MEXT), Japan:
Grants-in-Aid for Scientific Research on Innovative Areas [25110330 to H.F.] and
a JSPS Research Fellowship for Young Scientists [12J02079 to T.G.]; funds for research
performed by S.M.B. and A.G. were provided by University of California, Davis startup
funds."
author:
- first_name: Silvana
full_name: Porco, Silvana
last_name: Porco
- first_name: Antoine
full_name: Larrieu, Antoine
last_name: Larrieu
- first_name: Yujuan
full_name: Du, Yujuan
last_name: Du
- first_name: Allison
full_name: Gaudinier, Allison
last_name: Gaudinier
- first_name: Tatsuaki
full_name: Goh, Tatsuaki
last_name: Goh
- first_name: Kamal
full_name: Swarup, Kamal
last_name: Swarup
- first_name: Ranjan
full_name: Swarup, Ranjan
last_name: Swarup
- first_name: Britta
full_name: Kuempers, Britta
last_name: Kuempers
- first_name: Anthony
full_name: Bishopp, Anthony
last_name: Bishopp
- first_name: Julien
full_name: Lavenus, Julien
last_name: Lavenus
- first_name: Ilda
full_name: Casimiro, Ilda
last_name: Casimiro
- first_name: Kristine
full_name: Hill, Kristine
last_name: Hill
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Hidehiro
full_name: Fukaki, Hidehiro
last_name: Fukaki
- first_name: Siobhan
full_name: Brady, Siobhan
last_name: Brady
- first_name: Ben
full_name: Scheres, Ben
last_name: Scheres
- first_name: Benjamin
full_name: Peéet, Benjamin
last_name: Peéet
- first_name: Malcolm
full_name: Bennett, Malcolm
last_name: Bennett
citation:
ama: Porco S, Larrieu A, Du Y, et al. Lateral root emergence in Arabidopsis is dependent
on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development.
2016;143(18):3340-3349. doi:10.1242/dev.136283
apa: Porco, S., Larrieu, A., Du, Y., Gaudinier, A., Goh, T., Swarup, K., … Bennett,
M. (2016). Lateral root emergence in Arabidopsis is dependent on transcription
factor LBD29 regulation of auxin influx carrier LAX3. Development. Company
of Biologists. https://doi.org/10.1242/dev.136283
chicago: Porco, Silvana, Antoine Larrieu, Yujuan Du, Allison Gaudinier, Tatsuaki
Goh, Kamal Swarup, Ranjan Swarup, et al. “Lateral Root Emergence in Arabidopsis
Is Dependent on Transcription Factor LBD29 Regulation of Auxin Influx Carrier
LAX3.” Development. Company of Biologists, 2016. https://doi.org/10.1242/dev.136283.
ieee: S. Porco et al., “Lateral root emergence in Arabidopsis is dependent
on transcription factor LBD29 regulation of auxin influx carrier LAX3,” Development,
vol. 143, no. 18. Company of Biologists, pp. 3340–3349, 2016.
ista: Porco S, Larrieu A, Du Y, Gaudinier A, Goh T, Swarup K, Swarup R, Kuempers
B, Bishopp A, Lavenus J, Casimiro I, Hill K, Benková E, Fukaki H, Brady S, Scheres
B, Peéet B, Bennett M. 2016. Lateral root emergence in Arabidopsis is dependent
on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development.
143(18), 3340–3349.
mla: Porco, Silvana, et al. “Lateral Root Emergence in Arabidopsis Is Dependent
on Transcription Factor LBD29 Regulation of Auxin Influx Carrier LAX3.” Development,
vol. 143, no. 18, Company of Biologists, 2016, pp. 3340–49, doi:10.1242/dev.136283.
short: S. Porco, A. Larrieu, Y. Du, A. Gaudinier, T. Goh, K. Swarup, R. Swarup,
B. Kuempers, A. Bishopp, J. Lavenus, I. Casimiro, K. Hill, E. Benková, H. Fukaki,
S. Brady, B. Scheres, B. Peéet, M. Bennett, Development 143 (2016) 3340–3349.
date_created: 2018-12-11T11:51:04Z
date_published: 2016-09-13T00:00:00Z
date_updated: 2021-01-12T06:49:32Z
day: '13'
department:
- _id: EvBe
doi: 10.1242/dev.136283
intvolume: ' 143'
issue: '18'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-01595056/
month: '09'
oa: 1
oa_version: Preprint
page: 3340 - 3349
publication: Development
publication_status: published
publisher: Company of Biologists
publist_id: '6044'
quality_controlled: '1'
scopus_import: 1
status: public
title: Lateral root emergence in Arabidopsis is dependent on transcription factor
LBD29 regulation of auxin influx carrier LAX3
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 143
year: '2016'
...
---
_id: '1274'
abstract:
- lang: eng
text: Synchronized tissue polarization during regeneration or de novo vascular tissue
formation is a plant-specific example of intercellular communication and coordinated
development. According to the canalization hypothesis, the plant hormone auxin
serves as polarizing signal that mediates directional channel formation underlying
the spatio-temporal vasculature patterning. A necessary part of canalization is
a positive feedback between auxin signaling and polarity of the intercellular
auxin flow. The cellular and molecular mechanisms of this process are still poorly
understood, not the least, because of a lack of a suitable model system. We show
that the main genetic model plant, Arabidopsis (Arabidopsis thaliana) can be used
to study the canalization during vascular cambium regeneration and new vasculature
formation. We monitored localized auxin responses, directional auxin-transport
channels formation, and establishment of new vascular cambium polarity during
regenerative processes after stem wounding. The increased auxin response above
and around the wound preceded the formation of PIN1 auxin transporter-marked channels
from the primarily homogenous tissue and the transient, gradual changes in PIN1
localization preceded the polarity of newly formed vascular tissue. Thus, Arabidopsis
is a useful model for studies of coordinated tissue polarization and vasculature
formation after wounding allowing for genetic and mechanistic dissection of the
canalization hypothesis.
acknowledgement: We wish to thank Prof. Ewa U. Kurczyńska for initiation of this work
and valuable advices. We thank Martine De Cock for help in preparing the manuscript.
This work was supported by the European Research Council (project ERC-2011-StG-20101109-PSDP),
the European Social Fund (CZ.1.07/2.3.00/20.0043), and the Czech Science Foundation
GAČR (GA13-40637 S) to J.F., (GA 13-39982S) to E.B. and E.M. and in part by the
European Regional Development Fund (project “CEITEC, Central European Institute
of Technology”, CZ.1.05/1.1.00/02.0068).
article_number: '33754'
article_processing_charge: No
author:
- first_name: Ewa
full_name: Mazur, Ewa
last_name: Mazur
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Mazur E, Benková E, Friml J. Vascular cambium regeneration and vessel formation
in wounded inflorescence stems of Arabidopsis. Scientific Reports. 2016;6.
doi:10.1038/srep33754
apa: Mazur, E., Benková, E., & Friml, J. (2016). Vascular cambium regeneration
and vessel formation in wounded inflorescence stems of Arabidopsis. Scientific
Reports. Nature Publishing Group. https://doi.org/10.1038/srep33754
chicago: Mazur, Ewa, Eva Benková, and Jiří Friml. “Vascular Cambium Regeneration
and Vessel Formation in Wounded Inflorescence Stems of Arabidopsis.” Scientific
Reports. Nature Publishing Group, 2016. https://doi.org/10.1038/srep33754.
ieee: E. Mazur, E. Benková, and J. Friml, “Vascular cambium regeneration and vessel
formation in wounded inflorescence stems of Arabidopsis,” Scientific Reports,
vol. 6. Nature Publishing Group, 2016.
ista: Mazur E, Benková E, Friml J. 2016. Vascular cambium regeneration and vessel
formation in wounded inflorescence stems of Arabidopsis. Scientific Reports. 6,
33754.
mla: Mazur, Ewa, et al. “Vascular Cambium Regeneration and Vessel Formation in Wounded
Inflorescence Stems of Arabidopsis.” Scientific Reports, vol. 6, 33754,
Nature Publishing Group, 2016, doi:10.1038/srep33754.
short: E. Mazur, E. Benková, J. Friml, Scientific Reports 6 (2016).
date_created: 2018-12-11T11:51:05Z
date_published: 2016-09-21T00:00:00Z
date_updated: 2025-05-07T11:12:28Z
day: '21'
ddc:
- '581'
department:
- _id: EvBe
- _id: JiFr
doi: 10.1038/srep33754
external_id:
pmid:
- '27649687'
file:
- access_level: open_access
checksum: ee371fbc9124ad93157a95829264e4fe
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:25Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5008'
file_name: IST-2016-692-v1+1_srep33754.pdf
file_size: 2895147
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 6'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
pmid: 1
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '6042'
pubrep_id: '692'
quality_controlled: '1'
related_material:
record:
- id: '545'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Vascular cambium regeneration and vessel formation in wounded inflorescence
stems of Arabidopsis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2016'
...
---
_id: '1275'
article_number: '139802'
author:
- first_name: Andrew
full_name: Callan Jones, Andrew
last_name: Callan Jones
- first_name: Verena
full_name: Ruprecht, Verena
id: 4D71A03A-F248-11E8-B48F-1D18A9856A87
last_name: Ruprecht
orcid: 0000-0003-4088-8633
- first_name: Stefan
full_name: Wieser, Stefan
id: 355AA5A0-F248-11E8-B48F-1D18A9856A87
last_name: Wieser
orcid: 0000-0002-2670-2217
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Raphaël
full_name: Voituriez, Raphaël
last_name: Voituriez
citation:
ama: Callan Jones A, Ruprecht V, Wieser S, Heisenberg C-PJ, Voituriez R. Callan-Jones
et al. Reply. Physical Review Letters. 2016;117(13). doi:10.1103/PhysRevLett.117.139802
apa: Callan Jones, A., Ruprecht, V., Wieser, S., Heisenberg, C.-P. J., & Voituriez,
R. (2016). Callan-Jones et al. Reply. Physical Review Letters. American
Physical Society. https://doi.org/10.1103/PhysRevLett.117.139802
chicago: Callan Jones, Andrew, Verena Ruprecht, Stefan Wieser, Carl-Philipp J Heisenberg,
and Raphaël Voituriez. “Callan-Jones et Al. Reply.” Physical Review Letters.
American Physical Society, 2016. https://doi.org/10.1103/PhysRevLett.117.139802.
ieee: A. Callan Jones, V. Ruprecht, S. Wieser, C.-P. J. Heisenberg, and R. Voituriez,
“Callan-Jones et al. Reply,” Physical Review Letters, vol. 117, no. 13.
American Physical Society, 2016.
ista: Callan Jones A, Ruprecht V, Wieser S, Heisenberg C-PJ, Voituriez R. 2016.
Callan-Jones et al. Reply. Physical Review Letters. 117(13), 139802.
mla: Callan Jones, Andrew, et al. “Callan-Jones et Al. Reply.” Physical Review
Letters, vol. 117, no. 13, 139802, American Physical Society, 2016, doi:10.1103/PhysRevLett.117.139802.
short: A. Callan Jones, V. Ruprecht, S. Wieser, C.-P.J. Heisenberg, R. Voituriez,
Physical Review Letters 117 (2016).
date_created: 2018-12-11T11:51:05Z
date_published: 2016-09-22T00:00:00Z
date_updated: 2021-01-12T06:49:33Z
day: '22'
department:
- _id: CaHe
doi: 10.1103/PhysRevLett.117.139802
intvolume: ' 117'
issue: '13'
language:
- iso: eng
month: '09'
oa_version: None
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '6041'
quality_controlled: '1'
scopus_import: 1
status: public
title: Callan-Jones et al. Reply
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2016'
...
---
_id: '1276'
abstract:
- lang: eng
text: The cytochrome (cyt) bc 1 complex is an integral component of the respiratory
electron transfer chain sustaining the energy needs of organisms ranging from
humans to bacteria. Due to its ubiquitous role in the energy metabolism, both
the oxidation and reduction of the enzyme's substrate co-enzyme Q has been studied
vigorously. Here, this vast amount of data is reassessed after probing the substrate
reduction steps at the Q i-site of the cyt bc 1 complex of Rhodobacter capsulatus
using atomistic molecular dynamics simulations. The simulations suggest that the
Lys251 side chain could rotate into the Q i-site to facilitate binding of half-protonated
semiquinone-a reaction intermediate that is potentially formed during substrate
reduction. At this bent pose, the Lys251 forms a salt bridge with the Asp252,
thus making direct proton transfer possible. In the neutral state, the lysine
side chain stays close to the conserved binding location of cardiolipin (CL).
This back-and-forth motion between the CL and Asp252 indicates that Lys251 functions
as a proton shuttle controlled by pH-dependent negative feedback. The CL/K/D switching,
which represents a refinement to the previously described CL/K pathway, fine-tunes
the proton transfer process. Lastly, the simulation data was used to formulate
a mechanism for reducing the substrate at the Q i-site.
acknowledgement: We wish to thank CSC – IT Centre for Science (Espoo, Finland) for
computational resources. For financial support, we wish to thank the Academy of
Finland (TR, IV and PAP; Center of Excellence in Biomembrane Research (IV, TR)),
the Finnish Doctoral Programme in Computational Sciences (KK), the Sigrid Juselius
Foundation (IV), the Paulo Foundation (PAP), and the European Research Council (IV,
TR; Advanced Grant project CROWDED-PRO-LIPIDS). AO acknowledges The Wellcome Trust
International Senior Research Fellowship.
article_number: '33607'
author:
- first_name: Pekka
full_name: Postila, Pekka
last_name: Postila
- first_name: Karol
full_name: Kaszuba, Karol
id: 3FDF9472-F248-11E8-B48F-1D18A9856A87
last_name: Kaszuba
- first_name: Patryk
full_name: Kuleta, Patryk
last_name: Kuleta
- first_name: Ilpo
full_name: Vattulainen, Ilpo
last_name: Vattulainen
- first_name: Marcin
full_name: Sarewicz, Marcin
last_name: Sarewicz
- first_name: Artur
full_name: Osyczka, Artur
last_name: Osyczka
- first_name: Tomasz
full_name: Róg, Tomasz
last_name: Róg
citation:
ama: Postila P, Kaszuba K, Kuleta P, et al. Atomistic determinants of co-enzyme
Q reduction at the Qi-site of the cytochrome bc1 complex. Scientific Reports.
2016;6. doi:10.1038/srep33607
apa: Postila, P., Kaszuba, K., Kuleta, P., Vattulainen, I., Sarewicz, M., Osyczka,
A., & Róg, T. (2016). Atomistic determinants of co-enzyme Q reduction at the
Qi-site of the cytochrome bc1 complex. Scientific Reports. Nature Publishing
Group. https://doi.org/10.1038/srep33607
chicago: Postila, Pekka, Karol Kaszuba, Patryk Kuleta, Ilpo Vattulainen, Marcin
Sarewicz, Artur Osyczka, and Tomasz Róg. “Atomistic Determinants of Co-Enzyme
Q Reduction at the Qi-Site of the Cytochrome Bc1 Complex.” Scientific Reports.
Nature Publishing Group, 2016. https://doi.org/10.1038/srep33607.
ieee: P. Postila et al., “Atomistic determinants of co-enzyme Q reduction
at the Qi-site of the cytochrome bc1 complex,” Scientific Reports, vol.
6. Nature Publishing Group, 2016.
ista: Postila P, Kaszuba K, Kuleta P, Vattulainen I, Sarewicz M, Osyczka A, Róg
T. 2016. Atomistic determinants of co-enzyme Q reduction at the Qi-site of the
cytochrome bc1 complex. Scientific Reports. 6, 33607.
mla: Postila, Pekka, et al. “Atomistic Determinants of Co-Enzyme Q Reduction at
the Qi-Site of the Cytochrome Bc1 Complex.” Scientific Reports, vol. 6,
33607, Nature Publishing Group, 2016, doi:10.1038/srep33607.
short: P. Postila, K. Kaszuba, P. Kuleta, I. Vattulainen, M. Sarewicz, A. Osyczka,
T. Róg, Scientific Reports 6 (2016).
date_created: 2018-12-11T11:51:05Z
date_published: 2016-09-26T00:00:00Z
date_updated: 2021-01-12T06:49:34Z
day: '26'
ddc:
- '576'
department:
- _id: LeSa
doi: 10.1038/srep33607
file:
- access_level: open_access
checksum: 07c591c1250ebef266333cbc3228b4dd
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:09Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5261'
file_name: IST-2016-691-v1+1_srep33607.pdf
file_size: 1960563
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 6'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '6040'
pubrep_id: '691'
quality_controlled: '1'
scopus_import: 1
status: public
title: Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome
bc1 complex
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2016'
...
---
_id: '1277'
abstract:
- lang: eng
text: "The Arabidopsis thaliana endogenous elicitor peptides (AtPeps) are released
into the apoplast after cellular damage caused by pathogens or wounding to induce
innate immunity by direct binding to the membrane-localized leucine-rich repeat
receptor kinases, PEP RECEPTOR1 (PEPR1) and PEPR2. Although the PEPR-mediated
signaling components and responses have been studied extensively, the contributions
of the subcellular localization and dynamics of the active PEPRs remain largely
unknown. We used live-cell imaging of the fluorescently labeled and bioactive
pep1 to visualize the intracellular behavior of the PEPRs in the Arabidopsis root
meristem. We found that AtPep1 decorated the plasma membrane (PM) in a receptor-dependent
manner and cointernalized with PEPRs. Trafficking of the AtPep1-PEPR1 complexes
to the vacuole required neither the trans-Golgi network/early endosome (TGN/EE)-localized
vacuolar H+ -ATPase activity nor the function of the brefeldin A-sensitive ADP-ribosylation
factor-guanine exchange factors (ARF-GEFs). In addition, AtPep1 and different
TGN/EE markers colocalized only rarely, implying that the intracellular route
of this receptor-ligand pair is largely independent of the TGN/EE. Inducible overexpression
of the Arabidopsis clathrin coat disassembly factor, Auxilin2, which inhibits
clathrin-mediated endocytosis (CME), impaired the AtPep1-PEPR1 internalization
and compromised AtPep1-mediated responses. Our results show that clathrin function
at the PM is required to induce plant defense responses, likely through CME of
cell surface-located signaling components.\r\n"
acknowledgement: "F.A.O.-M. was supported by special\r\nresearch funding from the
Flemish Government for a joint doctorate fellowship\r\nat Ghent University, and
funding from the Student Program\r\n–\r\nGraduate Studies\r\nPlan Program from the
Coordination for the Improvement of Higher Educa-\r\ntion Personnel, Brazil, for
a doctorate fellowship at the University of São Paulo.\r\nX.Z. and Q.L. are indebted
to the China Science Council and G.P.d.O. to the\r\n“\r\nCiência sem Fronteiras\r\n”\r\nfor
predoctoral fellowships. R.K. and Y.L. have re-\r\nceived postdoctoral fellowships
from the Belgian Science Policy Office. This\r\nresearch was supported by Flanders
Research Foundation Grant G008416N\r\n(to E.R.) and by the São Paulo Research Foundation
and the National Council\r\nfor Scientific and Technological Development (CNPq)
(D.S.d.M.). D.S.d.M. is a\r\nresearch fellow of CNPq.\r\nWe thank D. Van Damme,
E. Mylle, M. Castro Silva-Filho,\r\nand J. Goeman for providing usefu\r\nl advice
and technical assistance;\r\nI. Hara-Nishimura, J. Lin, G. Jürgens, M. A. Johnson,
and P. Bozhkov for sharing\r\npublished materials; and M. Nowack and M. Fendrych
for kindly donating the\r\npUBQ10::ATG8-YFP\r\n-expressing marker line."
author:
- first_name: Fausto
full_name: Ortiz Morea, Fausto
last_name: Ortiz Morea
- first_name: Daniel
full_name: Savatin, Daniel
last_name: Savatin
- first_name: Wim
full_name: Dejonghe, Wim
last_name: Dejonghe
- first_name: Rahul
full_name: Kumar, Rahul
last_name: Kumar
- first_name: Yu
full_name: Luo, Yu
last_name: Luo
- first_name: Maciek
full_name: Adamowski, Maciek
id: 45F536D2-F248-11E8-B48F-1D18A9856A87
last_name: Adamowski
orcid: 0000-0001-6463-5257
- first_name: Jos
full_name: Van Begin, Jos
last_name: Van Begin
- first_name: Keini
full_name: Dressano, Keini
last_name: Dressano
- first_name: Guilherme
full_name: De Oliveira, Guilherme
last_name: De Oliveira
- first_name: Xiuyang
full_name: Zhao, Xiuyang
last_name: Zhao
- first_name: Qing
full_name: Lu, Qing
last_name: Lu
- first_name: Annemieke
full_name: Madder, Annemieke
last_name: Madder
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Daniel
full_name: De Moura, Daniel
last_name: De Moura
- first_name: Eugenia
full_name: Russinova, Eugenia
last_name: Russinova
citation:
ama: Ortiz Morea F, Savatin D, Dejonghe W, et al. Danger-associated peptide signaling
in Arabidopsis requires clathrin. PNAS. 2016;113(39):11028-11033. doi:10.1073/pnas.1605588113
apa: Ortiz Morea, F., Savatin, D., Dejonghe, W., Kumar, R., Luo, Y., Adamowski,
M., … Russinova, E. (2016). Danger-associated peptide signaling in Arabidopsis
requires clathrin. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1605588113
chicago: Ortiz Morea, Fausto, Daniel Savatin, Wim Dejonghe, Rahul Kumar, Yu Luo,
Maciek Adamowski, Jos Van Begin, et al. “Danger-Associated Peptide Signaling in
Arabidopsis Requires Clathrin.” PNAS. National Academy of Sciences, 2016.
https://doi.org/10.1073/pnas.1605588113.
ieee: F. Ortiz Morea et al., “Danger-associated peptide signaling in Arabidopsis
requires clathrin,” PNAS, vol. 113, no. 39. National Academy of Sciences,
pp. 11028–11033, 2016.
ista: Ortiz Morea F, Savatin D, Dejonghe W, Kumar R, Luo Y, Adamowski M, Van Begin
J, Dressano K, De Oliveira G, Zhao X, Lu Q, Madder A, Friml J, De Moura D, Russinova
E. 2016. Danger-associated peptide signaling in Arabidopsis requires clathrin.
PNAS. 113(39), 11028–11033.
mla: Ortiz Morea, Fausto, et al. “Danger-Associated Peptide Signaling in Arabidopsis
Requires Clathrin.” PNAS, vol. 113, no. 39, National Academy of Sciences,
2016, pp. 11028–33, doi:10.1073/pnas.1605588113.
short: F. Ortiz Morea, D. Savatin, W. Dejonghe, R. Kumar, Y. Luo, M. Adamowski,
J. Van Begin, K. Dressano, G. De Oliveira, X. Zhao, Q. Lu, A. Madder, J. Friml,
D. De Moura, E. Russinova, PNAS 113 (2016) 11028–11033.
date_created: 2018-12-11T11:51:06Z
date_published: 2016-09-27T00:00:00Z
date_updated: 2021-01-12T06:49:34Z
day: '27'
department:
- _id: JiFr
doi: 10.1073/pnas.1605588113
intvolume: ' 113'
issue: '39'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047203/
month: '09'
oa: 1
oa_version: Preprint
page: 11028 - 11033
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '6039'
quality_controlled: '1'
scopus_import: 1
status: public
title: Danger-associated peptide signaling in Arabidopsis requires clathrin
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 113
year: '2016'
...
---
_id: '1278'
abstract:
- lang: eng
text: Adaptations of vestibulo-ocular and optokinetic response eye movements have
been studied as an experimental model of cerebellum-dependent motor learning.
Several previous physiological and pharmacological studies have consistently suggested
that the cerebellar flocculus (FL) Purkinje cells (P-cells) and the medial vestibular
nucleus (MVN) neurons targeted by FL (FL-targeted MVN neurons) may respectively
maintain the memory traces of short- and long-term adaptation. To study the basic
structures of the FL-MVN synapses by light microscopy (LM) and electron microscopy
(EM), we injected green florescence protein (GFP)-expressing lentivirus into FL
to anterogradely label the FL P-cell axons in C57BL/6J mice. The FL P-cell axonal
boutons were distributed in the magnocellular MVN and in the border region of
parvocellular MVN and prepositus hypoglossi (PrH). In the magnocellular MVN, the
FL-P cell axons mainly terminated on somata and proximal dendrites. On the other
hand, in the parvocellular MVN/PrH, the FL P-cell axonal synaptic boutons mainly
terminated on the relatively small-diameter (< 1 μm) distal dendrites of MVN
neurons, forming symmetrical synapses. The majority of such parvocellular MVN/PrH
neurons were determined to be glutamatergic by immunocytochemistry and in-situ
hybridization of GFP expressing transgenic mice. To further examine the spatial
relationship between the synapses of FL P-cells and those of vestibular nerve
on the neurons of the parvocellular MVN/ PrH, we added injections of biotinylated
dextran amine into the semicircular canal and anterogradely labeled vestibular
nerve axons in some mice. The MVN dendrites receiving the FL P-cell axonal synaptic
boutons often closely apposed vestibular nerve synaptic boutons in both LM and
EM studies. Such a partial overlap of synaptic boutons of FL P-cell axons with
those of vestibular nerve axons in the distal dendrites of MVN neurons suggests
that inhibitory synapses of FL P-cells may influence the function of neighboring
excitatory synapses of vestibular nerve in the parvocellular MVN/PrH neurons.
acknowledgement: This work was supported by RIKEN [to SN]; Grant-in-Aid from the Japan
Society for the Promotion of Science, https://www.jsps.go.jp/english/e-grants/ [22300112
to SN].
article_number: e0164037
article_processing_charge: No
article_type: original
author:
- first_name: Hitomi
full_name: Matsuno, Hitomi
last_name: Matsuno
- first_name: Moeko
full_name: Kudoh, Moeko
last_name: Kudoh
- first_name: Akiya
full_name: Watakabe, Akiya
last_name: Watakabe
- first_name: Tetsuo
full_name: Yamamori, Tetsuo
last_name: Yamamori
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Soichi
full_name: Nagao, Soichi
last_name: Nagao
citation:
ama: 'Matsuno H, Kudoh M, Watakabe A, Yamamori T, Shigemoto R, Nagao S. Distribution
and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar
flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy
studies. PLoS One. 2016;11(10). doi:10.1371/journal.pone.0164037'
apa: 'Matsuno, H., Kudoh, M., Watakabe, A., Yamamori, T., Shigemoto, R., & Nagao,
S. (2016). Distribution and structure of synapses on medial vestibular nuclear
neurons targeted by cerebellar flocculus purkinje cells and vestibular nerve in
mice: Light and electron microscopy studies. PLoS One. Public Library of
Science. https://doi.org/10.1371/journal.pone.0164037'
chicago: 'Matsuno, Hitomi, Moeko Kudoh, Akiya Watakabe, Tetsuo Yamamori, Ryuichi
Shigemoto, and Soichi Nagao. “Distribution and Structure of Synapses on Medial
Vestibular Nuclear Neurons Targeted by Cerebellar Flocculus Purkinje Cells and
Vestibular Nerve in Mice: Light and Electron Microscopy Studies.” PLoS One.
Public Library of Science, 2016. https://doi.org/10.1371/journal.pone.0164037.'
ieee: 'H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, and S. Nagao,
“Distribution and structure of synapses on medial vestibular nuclear neurons targeted
by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light and
electron microscopy studies,” PLoS One, vol. 11, no. 10. Public Library
of Science, 2016.'
ista: 'Matsuno H, Kudoh M, Watakabe A, Yamamori T, Shigemoto R, Nagao S. 2016. Distribution
and structure of synapses on medial vestibular nuclear neurons targeted by cerebellar
flocculus purkinje cells and vestibular nerve in mice: Light and electron microscopy
studies. PLoS One. 11(10), e0164037.'
mla: 'Matsuno, Hitomi, et al. “Distribution and Structure of Synapses on Medial
Vestibular Nuclear Neurons Targeted by Cerebellar Flocculus Purkinje Cells and
Vestibular Nerve in Mice: Light and Electron Microscopy Studies.” PLoS One,
vol. 11, no. 10, e0164037, Public Library of Science, 2016, doi:10.1371/journal.pone.0164037.'
short: H. Matsuno, M. Kudoh, A. Watakabe, T. Yamamori, R. Shigemoto, S. Nagao, PLoS
One 11 (2016).
date_created: 2018-12-11T11:51:06Z
date_published: 2016-10-06T00:00:00Z
date_updated: 2021-01-12T06:49:34Z
day: '06'
ddc:
- '570'
- '571'
department:
- _id: RySh
doi: 10.1371/journal.pone.0164037
file:
- access_level: open_access
checksum: 7c0ba0ca6d79844059158059d2a38d25
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:16Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5269'
file_name: IST-2016-689-v1+1_journal.pone.0164037.PDF
file_size: 3657084
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 11'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6038'
pubrep_id: '689'
quality_controlled: '1'
scopus_import: 1
status: public
title: 'Distribution and structure of synapses on medial vestibular nuclear neurons
targeted by cerebellar flocculus purkinje cells and vestibular nerve in mice: Light
and electron microscopy studies'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2016'
...
---
_id: '1279'
abstract:
- lang: eng
text: During hippocampal sharp wave/ripple (SWR) events, previously occurring, sensory
inputdriven neuronal firing patterns are replayed. Such replay is thought to be
important for plasticity- related processes and consolidation of memory traces.
It has previously been shown that the electrical stimulation-induced disruption
of SWR events interferes with learning in rodents in different experimental paradigms.
On the other hand, the cognitive map theory posits that the plastic changes of
the firing of hippocampal place cells constitute the electrophysiological counterpart
of the spatial learning, observable at the behavioral level. Therefore, we tested
whether intact SWR events occurring during the sleep/rest session after the first
exploration of a novel environment are needed for the stabilization of the CA1
code, which process requires plasticity. We found that the newly-formed representation
in the CA1 has the same level of stability with optogenetic SWR blockade as with
a control manipulation that delivered the same amount of light into the brain.
Therefore our results suggest that at least in the case of passive exploratory
behavior, SWR-related plasticity is dispensable for the stability of CA1 ensembles.
acknowledgement: 'The research leading to these results has received funding from
the People Programme (Marie Curie Actions) of the European Union''s Seventh Framework
Programme (FP7/2007-2013) under REA grant agreement n° [291734] via the IST FELLOWSHIP
awarded to Dr. Krisztián A. Kovács and the European Research Council starting grant
(acronym: HIPECMEM Project reference: 281511) awarded to Dr. Jozsef Csicsvari. We
thank Lauri Viljanto for technical help in building the ripple detector.'
article_number: e0164675
author:
- first_name: Krisztián
full_name: Kovács, Krisztián
id: 2AB5821E-F248-11E8-B48F-1D18A9856A87
last_name: Kovács
- first_name: Joseph
full_name: O'Neill, Joseph
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Philipp
full_name: Schönenberger, Philipp
id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
last_name: Schönenberger
- first_name: Markku
full_name: Penttonen, Markku
last_name: Penttonen
- first_name: Dámaris K
full_name: Rangel Guerrero, Dámaris K
id: 4871BCE6-F248-11E8-B48F-1D18A9856A87
last_name: Rangel Guerrero
orcid: 0000-0002-8602-4374
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: Kovács K, O’Neill J, Schönenberger P, Penttonen M, Rangel Guerrero DK, Csicsvari
JL. Optogenetically blocking sharp wave ripple events in sleep does not interfere
with the formation of stable spatial representation in the CA1 area of the hippocampus.
PLoS One. 2016;11(10). doi:10.1371/journal.pone.0164675
apa: Kovács, K., O’Neill, J., Schönenberger, P., Penttonen, M., Rangel Guerrero,
D. K., & Csicsvari, J. L. (2016). Optogenetically blocking sharp wave ripple
events in sleep does not interfere with the formation of stable spatial representation
in the CA1 area of the hippocampus. PLoS One. Public Library of Science.
https://doi.org/10.1371/journal.pone.0164675
chicago: Kovács, Krisztián, Joseph O’Neill, Philipp Schönenberger, Markku Penttonen,
Dámaris K Rangel Guerrero, and Jozsef L Csicsvari. “Optogenetically Blocking Sharp
Wave Ripple Events in Sleep Does Not Interfere with the Formation of Stable Spatial
Representation in the CA1 Area of the Hippocampus.” PLoS One. Public Library
of Science, 2016. https://doi.org/10.1371/journal.pone.0164675.
ieee: K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D. K. Rangel Guerrero,
and J. L. Csicsvari, “Optogenetically blocking sharp wave ripple events in sleep
does not interfere with the formation of stable spatial representation in the
CA1 area of the hippocampus,” PLoS One, vol. 11, no. 10. Public Library
of Science, 2016.
ista: Kovács K, O’Neill J, Schönenberger P, Penttonen M, Rangel Guerrero DK, Csicsvari
JL. 2016. Optogenetically blocking sharp wave ripple events in sleep does not
interfere with the formation of stable spatial representation in the CA1 area
of the hippocampus. PLoS One. 11(10), e0164675.
mla: Kovács, Krisztián, et al. “Optogenetically Blocking Sharp Wave Ripple Events
in Sleep Does Not Interfere with the Formation of Stable Spatial Representation
in the CA1 Area of the Hippocampus.” PLoS One, vol. 11, no. 10, e0164675,
Public Library of Science, 2016, doi:10.1371/journal.pone.0164675.
short: K. Kovács, J. O’Neill, P. Schönenberger, M. Penttonen, D.K. Rangel Guerrero,
J.L. Csicsvari, PLoS One 11 (2016).
date_created: 2018-12-11T11:51:06Z
date_published: 2016-10-19T00:00:00Z
date_updated: 2021-01-12T06:49:35Z
day: '19'
ddc:
- '570'
- '571'
department:
- _id: JoCs
doi: 10.1371/journal.pone.0164675
ec_funded: 1
file:
- access_level: open_access
checksum: 395895ecb2216e9c39135abaa56b28b3
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:26Z
date_updated: 2020-07-14T12:44:42Z
file_id: '5009'
file_name: IST-2016-690-v1+1_journal.pone.0164675.PDF
file_size: 4353592
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 11'
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 257A4776-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '281511'
name: Memory-related information processing in neuronal circuits of the hippocampus
and entorhinal cortex
publication: PLoS One
publication_status: published
publisher: Public Library of Science
publist_id: '6037'
pubrep_id: '690'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optogenetically blocking sharp wave ripple events in sleep does not interfere
with the formation of stable spatial representation in the CA1 area of the hippocampus
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 11
year: '2016'
...
---
_id: '1280'
abstract:
- lang: eng
text: We prove the Wigner-Dyson-Mehta conjecture at fixed energy in the bulk of
the spectrum for generalized symmetric and Hermitian Wigner matrices. Previous
results concerning the universality of random matrices either require an averaging
in the energy parameter or they hold only for Hermitian matrices if the energy
parameter is fixed. We develop a homogenization theory of the Dyson Brownian motion
and show that microscopic universality follows from mesoscopic statistics.
acknowledgement: "The work of P.B. was partially supported by National Sci-\r\nence
Foundation Grant DMS-1208859. The work of L.E. was partially supported\r\nby ERC
Advanced Grant RANMAT 338804. The work of H.-T. Y. was partially\r\nsupported by
National Science Foundation Grant DMS-1307444 and a Simons In-\r\nvestigator award.
\ The work of J.Y. was partially supported by National Science\r\nFoundation Grant
DMS-1207961. The major part of this research was conducted\r\nwhen all authors
were visiting IAS and were also supported by National Science\r\nFoundation Grant
DMS-1128255."
author:
- first_name: Paul
full_name: Bourgade, Paul
last_name: Bourgade
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Horngtzer
full_name: Yau, Horngtzer
last_name: Yau
- first_name: Jun
full_name: Yin, Jun
last_name: Yin
citation:
ama: Bourgade P, Erdös L, Yau H, Yin J. Fixed energy universality for generalized
wigner matrices. Communications on Pure and Applied Mathematics. 2016;69(10):1815-1881.
doi:10.1002/cpa.21624
apa: Bourgade, P., Erdös, L., Yau, H., & Yin, J. (2016). Fixed energy universality
for generalized wigner matrices. Communications on Pure and Applied Mathematics.
Wiley-Blackwell. https://doi.org/10.1002/cpa.21624
chicago: Bourgade, Paul, László Erdös, Horngtzer Yau, and Jun Yin. “Fixed Energy
Universality for Generalized Wigner Matrices.” Communications on Pure and Applied
Mathematics. Wiley-Blackwell, 2016. https://doi.org/10.1002/cpa.21624.
ieee: P. Bourgade, L. Erdös, H. Yau, and J. Yin, “Fixed energy universality for
generalized wigner matrices,” Communications on Pure and Applied Mathematics,
vol. 69, no. 10. Wiley-Blackwell, pp. 1815–1881, 2016.
ista: Bourgade P, Erdös L, Yau H, Yin J. 2016. Fixed energy universality for generalized
wigner matrices. Communications on Pure and Applied Mathematics. 69(10), 1815–1881.
mla: Bourgade, Paul, et al. “Fixed Energy Universality for Generalized Wigner Matrices.”
Communications on Pure and Applied Mathematics, vol. 69, no. 10, Wiley-Blackwell,
2016, pp. 1815–81, doi:10.1002/cpa.21624.
short: P. Bourgade, L. Erdös, H. Yau, J. Yin, Communications on Pure and Applied
Mathematics 69 (2016) 1815–1881.
date_created: 2018-12-11T11:51:07Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2021-01-12T06:49:35Z
day: '01'
department:
- _id: LaEr
doi: 10.1002/cpa.21624
ec_funded: 1
intvolume: ' 69'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1407.5606
month: '10'
oa: 1
oa_version: Preprint
page: 1815 - 1881
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication: Communications on Pure and Applied Mathematics
publication_status: published
publisher: Wiley-Blackwell
publist_id: '6036'
scopus_import: 1
status: public
title: Fixed energy universality for generalized wigner matrices
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 69
year: '2016'
...
---
_id: '1281'
abstract:
- lang: eng
text: Plants are able to modulate root growth and development to optimize their
nitrogen nutrition. In Arabidopsis (Arabidopsis thaliana), the adaptive root response
to nitrate (NO3 -) depends on the NRT1.1/NPF6.3 transporter/sensor. NRT1.1 represses
emergence of lateral root primordia (LRPs) at low concentration or absence of
NO3 - through its auxin transport activity that lowers auxin accumulation in LR.
However, these functional data strongly contrast with the known transcriptional
regulation of NRT1.1, which is markedly repressed in LRPs in the absence of NO3
-. To explain this discrepancy, we investigated in detail the spatiotemporal expression
pattern of the NRT1.1 protein during LRP development and combined local transcript
analysis with the use of transgenic lines expressing tagged NRT1.1 proteins. Our
results show that although NO3 - stimulates NRT1.1 transcription and probably
mRNA stability both in primary root tissues and in LRPs, it acts differentially
on protein accumulation, depending on the tissues considered with stimulation
in cortex and epidermis of the primary root and a strong repression in LRPs and
to a lower extent at the primary root tip. This demonstrates that NRT1.1 is strongly
regulated at the posttranscriptional level by tissue-specific mechanisms. These
mechanisms are crucial for controlling the large palette of adaptive responses
to NO3 - mediated by NRT1.1 as they ensure that the protein is present in the
proper tissue under the specific conditions where it plays a signaling role in
this particular tissue.
acknowledgement: "This work was supported by the Agropolis Foundation (RHIZOPOLIS
project to A.G. and P.N., and RTRA 2009-2011 project to F.P.-W.), the Knowledge
Biobase Economy European project (KBBE-005-002 Root enhancement for crop improvement
to M.P. and P.N.), and the European EURoot project (FP7-KBBE-2011-5 to J.R., A.G.,
and P.N.). We thank Carine Alcon for the help with analysis of confocal images,
Xavier\r\nDumont for assistance with Arabidopsis transformations, staff members
of the\r\nInstitut de Biologie Intégrative des Plantes for technical assistance
with biological\r\nmaterial culture, and students and trainees for assistance with
laboratory work.\r\nConfocal observations were made at the Montpellier RIO Imaging
facility."
author:
- first_name: Eléonore
full_name: Bouguyon, Eléonore
last_name: Bouguyon
- first_name: Francine
full_name: Perrine Walker, Francine
last_name: Perrine Walker
- first_name: Marjorie
full_name: Pervent, Marjorie
last_name: Pervent
- first_name: Juliette
full_name: Rochette, Juliette
last_name: Rochette
- first_name: Candela
full_name: Cuesta, Candela
id: 33A3C818-F248-11E8-B48F-1D18A9856A87
last_name: Cuesta
orcid: 0000-0003-1923-2410
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Alexandre
full_name: Martinière, Alexandre
last_name: Martinière
- first_name: Lien
full_name: Bach, Lien
last_name: Bach
- first_name: Gabriel
full_name: Krouk, Gabriel
last_name: Krouk
- first_name: Alain
full_name: Gojon, Alain
last_name: Gojon
- first_name: Philippe
full_name: Nacry, Philippe
last_name: Nacry
citation:
ama: Bouguyon E, Perrine Walker F, Pervent M, et al. Nitrate controls root development
through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor.
Plant Physiology. 2016;172(2):1237-1248. doi:10.1104/pp.16.01047
apa: Bouguyon, E., Perrine Walker, F., Pervent, M., Rochette, J., Cuesta, C., Benková,
E., … Nacry, P. (2016). Nitrate controls root development through posttranscriptional
regulation of the NRT1.1/NPF6.3 transporter sensor. Plant Physiology. American
Society of Plant Biologists. https://doi.org/10.1104/pp.16.01047
chicago: Bouguyon, Eléonore, Francine Perrine Walker, Marjorie Pervent, Juliette
Rochette, Candela Cuesta, Eva Benková, Alexandre Martinière, et al. “Nitrate Controls
Root Development through Posttranscriptional Regulation of the NRT1.1/NPF6.3 Transporter
Sensor.” Plant Physiology. American Society of Plant Biologists, 2016.
https://doi.org/10.1104/pp.16.01047.
ieee: E. Bouguyon et al., “Nitrate controls root development through posttranscriptional
regulation of the NRT1.1/NPF6.3 transporter sensor,” Plant Physiology,
vol. 172, no. 2. American Society of Plant Biologists, pp. 1237–1248, 2016.
ista: Bouguyon E, Perrine Walker F, Pervent M, Rochette J, Cuesta C, Benková E,
Martinière A, Bach L, Krouk G, Gojon A, Nacry P. 2016. Nitrate controls root development
through posttranscriptional regulation of the NRT1.1/NPF6.3 transporter sensor.
Plant Physiology. 172(2), 1237–1248.
mla: Bouguyon, Eléonore, et al. “Nitrate Controls Root Development through Posttranscriptional
Regulation of the NRT1.1/NPF6.3 Transporter Sensor.” Plant Physiology,
vol. 172, no. 2, American Society of Plant Biologists, 2016, pp. 1237–48, doi:10.1104/pp.16.01047.
short: E. Bouguyon, F. Perrine Walker, M. Pervent, J. Rochette, C. Cuesta, E. Benková,
A. Martinière, L. Bach, G. Krouk, A. Gojon, P. Nacry, Plant Physiology 172 (2016)
1237–1248.
date_created: 2018-12-11T11:51:07Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2021-01-12T06:49:36Z
day: '01'
department:
- _id: EvBe
doi: 10.1104/pp.16.01047
intvolume: ' 172'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5047109/
month: '10'
oa: 1
oa_version: Preprint
page: 1237 - 1248
publication: Plant Physiology
publication_status: published
publisher: American Society of Plant Biologists
publist_id: '6035'
quality_controlled: '1'
scopus_import: 1
status: public
title: Nitrate controls root development through posttranscriptional regulation of
the NRT1.1/NPF6.3 transporter sensor
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 172
year: '2016'
...
---
_id: '1282'
abstract:
- lang: eng
text: 'We consider higher-dimensional generalizations of the normalized Laplacian
and the adjacency matrix of graphs and study their eigenvalues for the Linial–Meshulam
model Xk(n, p) of random k-dimensional simplicial complexes on n vertices. We
show that for p = Ω(logn/n), the eigenvalues of each of the matrices are a.a.s.
concentrated around two values. The main tool, which goes back to the work of
Garland, are arguments that relate the eigenvalues of these matrices to those
of graphs that arise as links of (k - 2)-dimensional faces. Garland’s result concerns
the Laplacian; we develop an analogous result for the adjacency matrix. The same
arguments apply to other models of random complexes which allow for dependencies
between the choices of k-dimensional simplices. In the second part of the paper,
we apply this to the question of possible higher-dimensional analogues of the
discrete Cheeger inequality, which in the classical case of graphs relates the
eigenvalues of a graph and its edge expansion. It is very natural to ask whether
this generalizes to higher dimensions and, in particular, whether the eigenvalues
of the higher-dimensional Laplacian capture the notion of coboundary expansion—a
higher-dimensional generalization of edge expansion that arose in recent work
of Linial and Meshulam and of Gromov; this question was raised, for instance,
by Dotterrer and Kahle. We show that this most straightforward version of a higher-dimensional
discrete Cheeger inequality fails, in quite a strong way: For every k ≥ 2 and
n ∈ N, there is a k-dimensional complex Yn k on n vertices that has strong spectral
expansion properties (all nontrivial eigenvalues of the normalised k-dimensional
Laplacian lie in the interval [1−O(1/√1), 1+0(1/√1]) but whose coboundary expansion
is bounded from above by O(log n/n) and so tends to zero as n → ∞; moreover, Yn
k can be taken to have vanishing integer homology in dimension less than k.'
author:
- first_name: Anna
full_name: Gundert, Anna
last_name: Gundert
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: Gundert A, Wagner U. On eigenvalues of random complexes. Israel Journal
of Mathematics. 2016;216(2):545-582. doi:10.1007/s11856-016-1419-1
apa: Gundert, A., & Wagner, U. (2016). On eigenvalues of random complexes. Israel
Journal of Mathematics. Springer. https://doi.org/10.1007/s11856-016-1419-1
chicago: Gundert, Anna, and Uli Wagner. “On Eigenvalues of Random Complexes.” Israel
Journal of Mathematics. Springer, 2016. https://doi.org/10.1007/s11856-016-1419-1.
ieee: A. Gundert and U. Wagner, “On eigenvalues of random complexes,” Israel
Journal of Mathematics, vol. 216, no. 2. Springer, pp. 545–582, 2016.
ista: Gundert A, Wagner U. 2016. On eigenvalues of random complexes. Israel Journal
of Mathematics. 216(2), 545–582.
mla: Gundert, Anna, and Uli Wagner. “On Eigenvalues of Random Complexes.” Israel
Journal of Mathematics, vol. 216, no. 2, Springer, 2016, pp. 545–82, doi:10.1007/s11856-016-1419-1.
short: A. Gundert, U. Wagner, Israel Journal of Mathematics 216 (2016) 545–582.
date_created: 2018-12-11T11:51:07Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2021-01-12T06:49:36Z
day: '01'
department:
- _id: UlWa
doi: 10.1007/s11856-016-1419-1
intvolume: ' 216'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1411.4906
month: '10'
oa: 1
oa_version: Preprint
page: 545 - 582
publication: Israel Journal of Mathematics
publication_status: published
publisher: Springer
publist_id: '6034'
quality_controlled: '1'
scopus_import: 1
status: public
title: On eigenvalues of random complexes
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 216
year: '2016'
...
---
_id: '1283'
abstract:
- lang: eng
text: The impact of the plant hormone ethylene on seedling development has long
been recognized; however, its ecophysiological relevance is unexplored. Three
recent studies demonstrate that ethylene is a critical endogenous integrator of
various environmental signals including mechanical stress, light, and oxygen availability
during seedling germination and growth through the soil.
acknowledgement: "This work was supported by the Austrian Science Fund (FWF01_I1774S)
to E.B., the Natural Science Foundation of Fujian Province (2016J01099), and the
Fujian–Taiwan Joint Innovative Center for Germplasm Resources and Cultivation of
Crops (FJ 2011 Program, No 2015-75) to Q.Z. The\r\nauthors\r\nthank\r\nIsrael\r\nAusin\r\nand\r\nXu\r\nChen\r\nfor\r\ncritical\r\nreading\r\nof\r\nthe\r\nmanuscript."
article_type: original
author:
- first_name: Qiang
full_name: Zhu, Qiang
id: 40A4B9E6-F248-11E8-B48F-1D18A9856A87
last_name: Zhu
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Zhu Q, Benková E. Seedlings’ strategy to overcome a soil barrier. Trends
in Plant Science. 2016;21(10):809-811. doi:10.1016/j.tplants.2016.08.003
apa: Zhu, Q., & Benková, E. (2016). Seedlings’ strategy to overcome a soil barrier.
Trends in Plant Science. Cell Press. https://doi.org/10.1016/j.tplants.2016.08.003
chicago: Zhu, Qiang, and Eva Benková. “Seedlings’ Strategy to Overcome a Soil Barrier.”
Trends in Plant Science. Cell Press, 2016. https://doi.org/10.1016/j.tplants.2016.08.003.
ieee: Q. Zhu and E. Benková, “Seedlings’ strategy to overcome a soil barrier,” Trends
in Plant Science, vol. 21, no. 10. Cell Press, pp. 809–811, 2016.
ista: Zhu Q, Benková E. 2016. Seedlings’ strategy to overcome a soil barrier. Trends
in Plant Science. 21(10), 809–811.
mla: Zhu, Qiang, and Eva Benková. “Seedlings’ Strategy to Overcome a Soil Barrier.”
Trends in Plant Science, vol. 21, no. 10, Cell Press, 2016, pp. 809–11,
doi:10.1016/j.tplants.2016.08.003.
short: Q. Zhu, E. Benková, Trends in Plant Science 21 (2016) 809–811.
date_created: 2018-12-11T11:51:08Z
date_published: 2016-10-01T00:00:00Z
date_updated: 2021-01-12T06:49:36Z
day: '01'
ddc:
- '575'
department:
- _id: EvBe
doi: 10.1016/j.tplants.2016.08.003
file:
- access_level: local
checksum: 4d569977fad7a7f22b7e3424003d2ab1
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:19Z
date_updated: 2020-07-14T12:44:42Z
file_id: '4679'
file_name: IST-2018-1018-v1+1_Zhu_and_Benkova_TIPS_2016.pdf
file_size: 229094
relation: main_file
file_date_updated: 2020-07-14T12:44:42Z
has_accepted_license: '1'
intvolume: ' 21'
issue: '10'
language:
- iso: eng
month: '10'
oa_version: Submitted Version
page: 809 - 811
project:
- _id: 2542D156-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I 1774-B16
name: Hormone cross-talk drives nutrient dependent plant development
publication: Trends in Plant Science
publication_status: published
publisher: Cell Press
publist_id: '6033'
pubrep_id: '1018'
quality_controlled: '1'
scopus_import: 1
status: public
title: Seedlings’ strategy to overcome a soil barrier
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 21
year: '2016'
...
---
_id: '1285'
abstract:
- lang: eng
text: Cell migration is central to a multitude of physiological processes, including
embryonic development, immune surveillance, and wound healing, and deregulated
migration is key to cancer dissemination. Decades of investigations have uncovered
many of the molecular and physical mechanisms underlying cell migration. Together
with protrusion extension and cell body retraction, adhesion to the substrate
via specific focal adhesion points has long been considered an essential step
in cell migration. Although this is true for cells moving on two-dimensional substrates,
recent studies have demonstrated that focal adhesions are not required for cells
moving in three dimensions, in which confinement is sufficient to maintain a cell
in contact with its substrate. Here, we review the investigations that have led
to challenging the requirement of specific adhesions for migration, discuss the
physical mechanisms proposed for cell body translocation during focal adhesion-independent
migration, and highlight the remaining open questions for the future.
acknowledgement: We would like to thank Dani Bodor for critical comments on the manuscript
and Guillaume Salbreux for discussions. The authors are supported by the United
Kingdom's Medical Research Council (MRC) (E.K.P. and I.M.A.; core funding to the
MRC Laboratory for Molecular Cell Biology), by the European Research Council [ERC
GA 311637 (E.K.P.) and ERC GA 281556 (M.S.)], and by a START award from the Austrian
Science Foundation (M.S.).
author:
- first_name: Ewa
full_name: Paluch, Ewa
last_name: Paluch
- first_name: Irene
full_name: Aspalter, Irene
last_name: Aspalter
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Paluch E, Aspalter I, Sixt MK. Focal adhesion-independent cell migration. Annual
Review of Cell and Developmental Biology. 2016;32:469-490. doi:10.1146/annurev-cellbio-111315-125341
apa: Paluch, E., Aspalter, I., & Sixt, M. K. (2016). Focal adhesion-independent
cell migration. Annual Review of Cell and Developmental Biology. Annual
Reviews. https://doi.org/10.1146/annurev-cellbio-111315-125341
chicago: Paluch, Ewa, Irene Aspalter, and Michael K Sixt. “Focal Adhesion-Independent
Cell Migration.” Annual Review of Cell and Developmental Biology. Annual
Reviews, 2016. https://doi.org/10.1146/annurev-cellbio-111315-125341.
ieee: E. Paluch, I. Aspalter, and M. K. Sixt, “Focal adhesion-independent cell migration,”
Annual Review of Cell and Developmental Biology, vol. 32. Annual Reviews,
pp. 469–490, 2016.
ista: Paluch E, Aspalter I, Sixt MK. 2016. Focal adhesion-independent cell migration.
Annual Review of Cell and Developmental Biology. 32, 469–490.
mla: Paluch, Ewa, et al. “Focal Adhesion-Independent Cell Migration.” Annual
Review of Cell and Developmental Biology, vol. 32, Annual Reviews, 2016, pp.
469–90, doi:10.1146/annurev-cellbio-111315-125341.
short: E. Paluch, I. Aspalter, M.K. Sixt, Annual Review of Cell and Developmental
Biology 32 (2016) 469–490.
date_created: 2018-12-11T11:51:08Z
date_published: 2016-10-06T00:00:00Z
date_updated: 2021-01-12T06:49:37Z
day: '06'
department:
- _id: MiSi
doi: 10.1146/annurev-cellbio-111315-125341
ec_funded: 1
intvolume: ' 32'
language:
- iso: eng
month: '10'
oa_version: None
page: 469 - 490
project:
- _id: 25A603A2-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '281556'
name: Cytoskeletal force generation and force transduction of migrating leukocytes
(EU)
- _id: 25A8E5EA-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Y 564-B12
name: Cytoskeletal force generation and transduction of leukocytes (FWF)
publication: Annual Review of Cell and Developmental Biology
publication_status: published
publisher: Annual Reviews
publist_id: '6031'
quality_controlled: '1'
scopus_import: 1
status: public
title: Focal adhesion-independent cell migration
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2016'
...
---
_id: '1286'
abstract:
- lang: eng
text: We use recently developed angulon theory [R. Schmidt and M. Lemeshko, Phys.
Rev. Lett. 114, 203001 (2015)PRLTAO0031-900710.1103/PhysRevLett.114.203001] to
study the rotational spectrum of a cyanide molecular anion immersed into Bose-Einstein
condensates of rubidium and strontium. Based on ab initio potential energy surfaces,
we provide a detailed study of the rotational Lamb shift and many-body-induced
fine structure which arise due to dressing of molecular rotation by a field of
phonon excitations. We demonstrate that the magnitude of these effects is large
enough in order to be observed in modern experiments on cold molecular ions. Furthermore,
we introduce a novel method to construct pseudopotentials starting from the ab
initio potential energy surfaces, which provides a means to obtain effective coupling
constants for low-energy polaron models.
acknowledgement: The work was supported by the NSF through a grant for the Institute
for Theoretical Atomic, Molecular, and Optical Physics at Harvard University and
the Smithsonian Astrophysical Observatory. B.M. acknowledges financial support received
from the People Programme (Marie Curie Actions) of the European Union's Seventh
Framework Programme (FP7/2007-2013) under REA grant agreement No. 291734. M.T. acknowledges
support from the EU Marie Curie COFUND action (ICFOnest), the EU Grants ERC AdG
OSYRIS, FP7 SIQS and EQuaM, FETPROACT QUIC, the Spanish Ministry Grants FOQUS (FIS2013-46768-P)
and Severo Ochoa (SEV-2015-0522), Generalitat de Catalunya (SGR 874), Fundacio Cellex,
the National Science Centre (2015/19/D/ST4/02173), and the PL-Grid Infrastructure.
article_number: '041601'
author:
- first_name: Bikashkali
full_name: Midya, Bikashkali
id: 456187FC-F248-11E8-B48F-1D18A9856A87
last_name: Midya
- first_name: Michał
full_name: Tomza, Michał
last_name: Tomza
- first_name: Richard
full_name: Schmidt, Richard
last_name: Schmidt
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
citation:
ama: Midya B, Tomza M, Schmidt R, Lemeshko M. Rotation of cold molecular ions inside
a Bose-Einstein condensate. Physical Review A - Atomic, Molecular, and Optical
Physics. 2016;94(4). doi:10.1103/PhysRevA.94.041601
apa: Midya, B., Tomza, M., Schmidt, R., & Lemeshko, M. (2016). Rotation of cold
molecular ions inside a Bose-Einstein condensate. Physical Review A - Atomic,
Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.94.041601
chicago: Midya, Bikashkali, Michał Tomza, Richard Schmidt, and Mikhail Lemeshko.
“Rotation of Cold Molecular Ions inside a Bose-Einstein Condensate.” Physical
Review A - Atomic, Molecular, and Optical Physics. American Physical Society,
2016. https://doi.org/10.1103/PhysRevA.94.041601.
ieee: B. Midya, M. Tomza, R. Schmidt, and M. Lemeshko, “Rotation of cold molecular
ions inside a Bose-Einstein condensate,” Physical Review A - Atomic, Molecular,
and Optical Physics, vol. 94, no. 4. American Physical Society, 2016.
ista: Midya B, Tomza M, Schmidt R, Lemeshko M. 2016. Rotation of cold molecular
ions inside a Bose-Einstein condensate. Physical Review A - Atomic, Molecular,
and Optical Physics. 94(4), 041601.
mla: Midya, Bikashkali, et al. “Rotation of Cold Molecular Ions inside a Bose-Einstein
Condensate.” Physical Review A - Atomic, Molecular, and Optical Physics,
vol. 94, no. 4, 041601, American Physical Society, 2016, doi:10.1103/PhysRevA.94.041601.
short: B. Midya, M. Tomza, R. Schmidt, M. Lemeshko, Physical Review A - Atomic,
Molecular, and Optical Physics 94 (2016).
date_created: 2018-12-11T11:51:09Z
date_published: 2016-10-13T00:00:00Z
date_updated: 2021-01-12T06:49:37Z
day: '13'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.94.041601
ec_funded: 1
intvolume: ' 94'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1607.06092
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Physical Review A - Atomic, Molecular, and Optical Physics
publication_status: published
publisher: American Physical Society
publist_id: '6030'
quality_controlled: '1'
scopus_import: 1
status: public
title: Rotation of cold molecular ions inside a Bose-Einstein condensate
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 94
year: '2016'
...