---
_id: '741'
abstract:
- lang: eng
  text: We prove that a system of N fermions interacting with an additional particle
    via point interactions is stable if the ratio of the mass of the additional particle
    to the one of the fermions is larger than some critical m*. The value of m* is
    independent of N and turns out to be less than 1. This fact has important implications
    for the stability of the unitary Fermi gas. We also characterize the domain of
    the Hamiltonian of this model, and establish the validity of the Tan relations
    for all wave functions in the domain.
article_processing_charge: No
author:
- first_name: Thomas
  full_name: Moser, Thomas
  id: 2B5FC9A4-F248-11E8-B48F-1D18A9856A87
  last_name: Moser
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Moser T, Seiringer R. Stability of a fermionic N+1 particle system with point
    interactions. <i>Communications in Mathematical Physics</i>. 2017;356(1):329-355.
    doi:<a href="https://doi.org/10.1007/s00220-017-2980-0">10.1007/s00220-017-2980-0</a>
  apa: Moser, T., &#38; Seiringer, R. (2017). Stability of a fermionic N+1 particle
    system with point interactions. <i>Communications in Mathematical Physics</i>.
    Springer. <a href="https://doi.org/10.1007/s00220-017-2980-0">https://doi.org/10.1007/s00220-017-2980-0</a>
  chicago: Moser, Thomas, and Robert Seiringer. “Stability of a Fermionic N+1 Particle
    System with Point Interactions.” <i>Communications in Mathematical Physics</i>.
    Springer, 2017. <a href="https://doi.org/10.1007/s00220-017-2980-0">https://doi.org/10.1007/s00220-017-2980-0</a>.
  ieee: T. Moser and R. Seiringer, “Stability of a fermionic N+1 particle system with
    point interactions,” <i>Communications in Mathematical Physics</i>, vol. 356,
    no. 1. Springer, pp. 329–355, 2017.
  ista: Moser T, Seiringer R. 2017. Stability of a fermionic N+1 particle system with
    point interactions. Communications in Mathematical Physics. 356(1), 329–355.
  mla: Moser, Thomas, and Robert Seiringer. “Stability of a Fermionic N+1 Particle
    System with Point Interactions.” <i>Communications in Mathematical Physics</i>,
    vol. 356, no. 1, Springer, 2017, pp. 329–55, doi:<a href="https://doi.org/10.1007/s00220-017-2980-0">10.1007/s00220-017-2980-0</a>.
  short: T. Moser, R. Seiringer, Communications in Mathematical Physics 356 (2017)
    329–355.
date_created: 2018-12-11T11:48:15Z
date_published: 2017-11-01T00:00:00Z
date_updated: 2023-09-27T12:34:15Z
day: '01'
ddc:
- '539'
department:
- _id: RoSe
doi: 10.1007/s00220-017-2980-0
ec_funded: 1
external_id:
  isi:
  - '000409821300010'
file:
- access_level: open_access
  checksum: 0fd9435400f91e9b3c5346319a2d24e3
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:10:50Z
  date_updated: 2020-07-14T12:47:57Z
  file_id: '4841'
  file_name: IST-2017-880-v1+1_s00220-017-2980-0.pdf
  file_size: 952639
  relation: main_file
file_date_updated: 2020-07-14T12:47:57Z
has_accepted_license: '1'
intvolume: '       356'
isi: 1
issue: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 329 - 355
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: Communications in Mathematical Physics
publication_identifier:
  issn:
  - '00103616'
publication_status: published
publisher: Springer
publist_id: '6926'
pubrep_id: '880'
quality_controlled: '1'
related_material:
  record:
  - id: '52'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Stability of a fermionic N+1 particle system with point interactions
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 356
year: '2017'
...
---
_id: '743'
abstract:
- lang: eng
  text: "This special issue of the Journal on Formal Methods in System Design is dedicated
    to Prof. Helmut Veith, who unexpectedly passed away in March 2016. Helmut Veith
    was a brilliant researcher, inspiring collaborator, passionate mentor, generous
    friend, and valued member of the formal methods community. Helmut was not only
    known for his numerous and influential contributions in the field of automated
    verification (most prominently his work on Counterexample-Guided Abstraction Refinement
    [1,2]), but also for his untiring and passionate efforts for the logic community:
    he co-organized the Vienna Summer of Logic (an event comprising twelve conferences
    and numerous workshops which attracted thousands of researchers from all over
    the world), he initiated the Vienna Center for Logic and Algorithms (which promotes
    international collaboration on logic and algorithms and organizes outreach events
    such as the LogicLounge), and he coordinated the Doctoral Program on Logical Methods
    in Computer Science at TU Wien (currently educating more than 40 doctoral students)
    and a National Research Network on Rigorous Systems Engineering (uniting fifteen
    researchers in Austria to address the challenge of building reliable and safe
    computer\r\nsystems). With his enthusiasm and commitment, Helmut completely reshaped
    the Austrian research landscape in the field of logic and verification in his
    few years as a full professor at TU Wien."
article_processing_charge: No
author:
- first_name: Georg
  full_name: Gottlob, Georg
  last_name: Gottlob
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000−0002−2985−7724
- first_name: Georg
  full_name: Weißenbacher, Georg
  last_name: Weißenbacher
citation:
  ama: Gottlob G, Henzinger TA, Weißenbacher G. Preface of the special issue in memoriam
    Helmut Veith. <i>Formal Methods in System Design</i>. 2017;51(2):267-269. doi:<a
    href="https://doi.org/10.1007/s10703-017-0307-6">10.1007/s10703-017-0307-6</a>
  apa: Gottlob, G., Henzinger, T. A., &#38; Weißenbacher, G. (2017). Preface of the
    special issue in memoriam Helmut Veith. <i>Formal Methods in System Design</i>.
    Springer. <a href="https://doi.org/10.1007/s10703-017-0307-6">https://doi.org/10.1007/s10703-017-0307-6</a>
  chicago: Gottlob, Georg, Thomas A Henzinger, and Georg Weißenbacher. “Preface of
    the Special Issue in Memoriam Helmut Veith.” <i>Formal Methods in System Design</i>.
    Springer, 2017. <a href="https://doi.org/10.1007/s10703-017-0307-6">https://doi.org/10.1007/s10703-017-0307-6</a>.
  ieee: G. Gottlob, T. A. Henzinger, and G. Weißenbacher, “Preface of the special
    issue in memoriam Helmut Veith,” <i>Formal Methods in System Design</i>, vol.
    51, no. 2. Springer, pp. 267–269, 2017.
  ista: Gottlob G, Henzinger TA, Weißenbacher G. 2017. Preface of the special issue
    in memoriam Helmut Veith. Formal Methods in System Design. 51(2), 267–269.
  mla: Gottlob, Georg, et al. “Preface of the Special Issue in Memoriam Helmut Veith.”
    <i>Formal Methods in System Design</i>, vol. 51, no. 2, Springer, 2017, pp. 267–69,
    doi:<a href="https://doi.org/10.1007/s10703-017-0307-6">10.1007/s10703-017-0307-6</a>.
  short: G. Gottlob, T.A. Henzinger, G. Weißenbacher, Formal Methods in System Design
    51 (2017) 267–269.
date_created: 2018-12-11T11:48:16Z
date_published: 2017-11-14T00:00:00Z
date_updated: 2023-09-27T12:29:29Z
day: '14'
department:
- _id: ToHe
doi: 10.1007/s10703-017-0307-6
external_id:
  isi:
  - '000415615600001'
intvolume: '        51'
isi: 1
issue: '2'
language:
- iso: eng
month: '11'
oa_version: None
page: 267 - 269
publication: Formal Methods in System Design
publication_status: published
publisher: Springer
publist_id: '6924'
quality_controlled: '1'
status: public
title: Preface of the special issue in memoriam Helmut Veith
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 51
year: '2017'
...
---
_id: '744'
abstract:
- lang: eng
  text: In evolutionary game theory interactions between individuals are often assumed
    obligatory. However, in many real-life situations, individuals can decide to opt
    out of an interaction depending on the information they have about the opponent.
    We consider a simple evolutionary game theoretic model to study such a scenario,
    where at each encounter between two individuals the type of the opponent (cooperator/defector)
    is known with some probability, and where each individual either accepts or opts
    out of the interaction. If the type of the opponent is unknown, a trustful individual
    accepts the interaction, whereas a suspicious individual opts out of the interaction.
    If either of the two individuals opt out both individuals remain without an interaction.
    We show that in the prisoners dilemma optional interactions along with suspicious
    behaviour facilitates the emergence of trustful cooperation.
article_processing_charge: No
article_type: original
author:
- first_name: Tadeas
  full_name: Priklopil, Tadeas
  id: 3C869AA0-F248-11E8-B48F-1D18A9856A87
  last_name: Priklopil
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Priklopil T, Chatterjee K, Nowak M. Optional interactions and suspicious behaviour
    facilitates trustful cooperation in prisoners dilemma. <i> Journal of Theoretical
    Biology</i>. 2017;433:64-72. doi:<a href="https://doi.org/10.1016/j.jtbi.2017.08.025">10.1016/j.jtbi.2017.08.025</a>
  apa: Priklopil, T., Chatterjee, K., &#38; Nowak, M. (2017). Optional interactions
    and suspicious behaviour facilitates trustful cooperation in prisoners dilemma.
    <i> Journal of Theoretical Biology</i>. Elsevier. <a href="https://doi.org/10.1016/j.jtbi.2017.08.025">https://doi.org/10.1016/j.jtbi.2017.08.025</a>
  chicago: Priklopil, Tadeas, Krishnendu Chatterjee, and Martin Nowak. “Optional Interactions
    and Suspicious Behaviour Facilitates Trustful Cooperation in Prisoners Dilemma.”
    <i> Journal of Theoretical Biology</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.jtbi.2017.08.025">https://doi.org/10.1016/j.jtbi.2017.08.025</a>.
  ieee: T. Priklopil, K. Chatterjee, and M. Nowak, “Optional interactions and suspicious
    behaviour facilitates trustful cooperation in prisoners dilemma,” <i> Journal
    of Theoretical Biology</i>, vol. 433. Elsevier, pp. 64–72, 2017.
  ista: Priklopil T, Chatterjee K, Nowak M. 2017. Optional interactions and suspicious
    behaviour facilitates trustful cooperation in prisoners dilemma.  Journal of Theoretical
    Biology. 433, 64–72.
  mla: Priklopil, Tadeas, et al. “Optional Interactions and Suspicious Behaviour Facilitates
    Trustful Cooperation in Prisoners Dilemma.” <i> Journal of Theoretical Biology</i>,
    vol. 433, Elsevier, 2017, pp. 64–72, doi:<a href="https://doi.org/10.1016/j.jtbi.2017.08.025">10.1016/j.jtbi.2017.08.025</a>.
  short: T. Priklopil, K. Chatterjee, M. Nowak,  Journal of Theoretical Biology 433
    (2017) 64–72.
date_created: 2018-12-11T11:48:16Z
date_published: 2017-11-21T00:00:00Z
date_updated: 2023-09-27T12:29:02Z
day: '21'
ddc:
- '000'
- '570'
department:
- _id: KrCh
doi: 10.1016/j.jtbi.2017.08.025
ec_funded: 1
external_id:
  isi:
  - '000412039800007'
  pmid:
  - '28867224'
file:
- access_level: open_access
  checksum: 4b43af1615ebf1a861840cb03d8a320c
  content_type: application/pdf
  creator: dernst
  date_created: 2019-11-19T07:57:39Z
  date_updated: 2020-07-14T12:47:58Z
  file_id: '7047'
  file_name: 2017_JournTheoretBio_Priklopil.pdf
  file_size: 537323
  relation: main_file
file_date_updated: 2020-07-14T12:47:58Z
has_accepted_license: '1'
intvolume: '       433'
isi: 1
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 64 - 72
pmid: 1
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '279307'
  name: 'Quantitative Graph Games: Theory and Applications'
publication: ' Journal of Theoretical Biology'
publication_identifier:
  issn:
  - '00225193'
publication_status: published
publisher: Elsevier
publist_id: '6923'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optional interactions and suspicious behaviour facilitates trustful cooperation
  in prisoners dilemma
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 433
year: '2017'
...
---
_id: '745'
abstract:
- lang: eng
  text: 'Fluid flows in nature and applications are frequently subject to periodic
    velocity modulations. Surprisingly, even for the generic case of flow through
    a straight pipe, there is little consensus regarding the influence of pulsation
    on the transition threshold to turbulence: while most studies predict a monotonically
    increasing threshold with pulsation frequency (i.e. Womersley number, ), others
    observe a decreasing threshold for identical parameters and only observe an increasing
    threshold at low . In the present study we apply recent advances in the understanding
    of transition in steady shear flows to pulsating pipe flow. For moderate pulsation
    amplitudes we find that the first instability encountered is subcritical (i.e.
    requiring finite amplitude disturbances) and gives rise to localized patches of
    turbulence (''puffs'') analogous to steady pipe flow. By monitoring the impact
    of pulsation on the lifetime of turbulence we map the onset of turbulence in parameter
    space. Transition in pulsatile flow can be separated into three regimes. At small
    Womersley numbers the dynamics is dominated by the decay turbulence suffers during
    the slower part of the cycle and hence transition is delayed significantly. As
    shown in this regime thresholds closely agree with estimates based on a quasi-steady
    flow assumption only taking puff decay rates into account. The transition point
    predicted in the zero limit equals to the critical point for steady pipe flow
    offset by the oscillation Reynolds number (i.e. the dimensionless oscillation
    amplitude). In the high frequency limit on the other hand, puff lifetimes are
    identical to those in steady pipe flow and hence the transition threshold appears
    to be unaffected by flow pulsation. In the intermediate frequency regime the transition
    threshold sharply drops (with increasing ) from the decay dominated (quasi-steady)
    threshold to the steady pipe flow level.'
article_processing_charge: No
author:
- first_name: Duo
  full_name: Xu, Duo
  id: 3454D55E-F248-11E8-B48F-1D18A9856A87
  last_name: Xu
- first_name: Sascha
  full_name: Warnecke, Sascha
  last_name: Warnecke
- first_name: Baofang
  full_name: Song, Baofang
  last_name: Song
- first_name: Xingyu
  full_name: Ma, Xingyu
  id: 34BADBA6-F248-11E8-B48F-1D18A9856A87
  last_name: Ma
  orcid: 0000-0002-0179-9737
- first_name: Björn
  full_name: Hof, Björn
  id: 3A374330-F248-11E8-B48F-1D18A9856A87
  last_name: Hof
  orcid: 0000-0003-2057-2754
citation:
  ama: Xu D, Warnecke S, Song B, Ma X, Hof B. Transition to turbulence in pulsating
    pipe flow. <i>Journal of Fluid Mechanics</i>. 2017;831:418-432. doi:<a href="https://doi.org/10.1017/jfm.2017.620">10.1017/jfm.2017.620</a>
  apa: Xu, D., Warnecke, S., Song, B., Ma, X., &#38; Hof, B. (2017). Transition to
    turbulence in pulsating pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge
    University Press. <a href="https://doi.org/10.1017/jfm.2017.620">https://doi.org/10.1017/jfm.2017.620</a>
  chicago: Xu, Duo, Sascha Warnecke, Baofang Song, Xingyu Ma, and Björn Hof. “Transition
    to Turbulence in Pulsating Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge
    University Press, 2017. <a href="https://doi.org/10.1017/jfm.2017.620">https://doi.org/10.1017/jfm.2017.620</a>.
  ieee: D. Xu, S. Warnecke, B. Song, X. Ma, and B. Hof, “Transition to turbulence
    in pulsating pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 831. Cambridge
    University Press, pp. 418–432, 2017.
  ista: Xu D, Warnecke S, Song B, Ma X, Hof B. 2017. Transition to turbulence in pulsating
    pipe flow. Journal of Fluid Mechanics. 831, 418–432.
  mla: Xu, Duo, et al. “Transition to Turbulence in Pulsating Pipe Flow.” <i>Journal
    of Fluid Mechanics</i>, vol. 831, Cambridge University Press, 2017, pp. 418–32,
    doi:<a href="https://doi.org/10.1017/jfm.2017.620">10.1017/jfm.2017.620</a>.
  short: D. Xu, S. Warnecke, B. Song, X. Ma, B. Hof, Journal of Fluid Mechanics 831
    (2017) 418–432.
date_created: 2018-12-11T11:48:17Z
date_published: 2017-11-25T00:00:00Z
date_updated: 2023-09-27T12:28:12Z
day: '25'
department:
- _id: BjHo
doi: 10.1017/jfm.2017.620
ec_funded: 1
external_id:
  isi:
  - '000412934800005'
intvolume: '       831'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1709.03738
month: '11'
oa: 1
oa_version: Submitted Version
page: 418 - 432
project:
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '306589'
  name: Decoding the complexity of turbulence at its origin
publication: Journal of Fluid Mechanics
publication_identifier:
  issn:
  - '00221120'
publication_status: published
publisher: Cambridge University Press
publist_id: '6922'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Transition to turbulence in pulsating pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 831
year: '2017'
...
---
_id: '746'
abstract:
- lang: eng
  text: Metabotropic glutamate receptor subtype 5 (mGluR5) is crucially implicated
    in the pathophysiology of Fragile X Syndrome (FXS); however, its dysfunction at
    the sub-cellular level, and related synaptic and cognitive phenotypes are unexplored.
    Here, we probed the consequences of mGluR5/Homer scaffold disruption for mGluR5
    cell-surface mobility, synaptic N-methyl-D-Aspartate receptor (NMDAR) function,
    and behavioral phenotypes in the second-generation Fmr1 knockout (KO) mouse. Using
    single-molecule tracking, we found that mGluR5 was significantly more mobile at
    synapses in hippocampal Fmr1 KO neurons, causing an increased synaptic surface
    co-clustering of mGluR5 and NMDAR. This correlated with a reduced amplitude of
    synaptic NMDAR currents, a lack of their mGluR5-Activated long-Term depression,
    and NMDAR/hippocampus dependent cognitive deficits. These synaptic and behavioral
    phenomena were reversed by knocking down Homer1a in Fmr1 KO mice. Our study provides
    a mechanistic link between changes of mGluR5 dynamics and pathological phenotypes
    of FXS, unveiling novel targets for mGluR5-based therapeutics.
article_number: '1103'
article_processing_charge: No
author:
- first_name: Elisabetta
  full_name: Aloisi, Elisabetta
  last_name: Aloisi
- first_name: Katy
  full_name: Le Corf, Katy
  last_name: Le Corf
- first_name: Julien
  full_name: Dupuis, Julien
  last_name: Dupuis
- first_name: Pei
  full_name: Zhang, Pei
  last_name: Zhang
- first_name: Melanie
  full_name: Ginger, Melanie
  last_name: Ginger
- first_name: Virginie
  full_name: Labrousse, Virginie
  last_name: Labrousse
- first_name: Michela
  full_name: Spatuzza, Michela
  last_name: Spatuzza
- first_name: Matthias
  full_name: Georg Haberl, Matthias
  last_name: Georg Haberl
- first_name: Lara
  full_name: Costa, Lara
  last_name: Costa
- first_name: Ryuichi
  full_name: Shigemoto, Ryuichi
  id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
  last_name: Shigemoto
  orcid: 0000-0001-8761-9444
- first_name: Anke
  full_name: Tappe Theodor, Anke
  last_name: Tappe Theodor
- first_name: Fillippo
  full_name: Drago, Fillippo
  last_name: Drago
- first_name: Pier
  full_name: Vincenzo Piazza, Pier
  last_name: Vincenzo Piazza
- first_name: Christophe
  full_name: Mulle, Christophe
  last_name: Mulle
- first_name: Laurent
  full_name: Groc, Laurent
  last_name: Groc
- first_name: Lucia
  full_name: Ciranna, Lucia
  last_name: Ciranna
- first_name: Maria
  full_name: Catania, Maria
  last_name: Catania
- first_name: Andreas
  full_name: Frick, Andreas
  last_name: Frick
citation:
  ama: Aloisi E, Le Corf K, Dupuis J, et al. Altered surface mGluR5 dynamics provoke
    synaptic NMDAR dysfunction and cognitive defects in Fmr1 knockout mice. <i>Nature
    Communications</i>. 2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-01191-2">10.1038/s41467-017-01191-2</a>
  apa: Aloisi, E., Le Corf, K., Dupuis, J., Zhang, P., Ginger, M., Labrousse, V.,
    … Frick, A. (2017). Altered surface mGluR5 dynamics provoke synaptic NMDAR dysfunction
    and cognitive defects in Fmr1 knockout mice. <i>Nature Communications</i>. Nature
    Publishing Group. <a href="https://doi.org/10.1038/s41467-017-01191-2">https://doi.org/10.1038/s41467-017-01191-2</a>
  chicago: Aloisi, Elisabetta, Katy Le Corf, Julien Dupuis, Pei Zhang, Melanie Ginger,
    Virginie Labrousse, Michela Spatuzza, et al. “Altered Surface MGluR5 Dynamics
    Provoke Synaptic NMDAR Dysfunction and Cognitive Defects in Fmr1 Knockout Mice.”
    <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-01191-2">https://doi.org/10.1038/s41467-017-01191-2</a>.
  ieee: E. Aloisi <i>et al.</i>, “Altered surface mGluR5 dynamics provoke synaptic
    NMDAR dysfunction and cognitive defects in Fmr1 knockout mice,” <i>Nature Communications</i>,
    vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Aloisi E, Le Corf K, Dupuis J, Zhang P, Ginger M, Labrousse V, Spatuzza M,
    Georg Haberl M, Costa L, Shigemoto R, Tappe Theodor A, Drago F, Vincenzo Piazza
    P, Mulle C, Groc L, Ciranna L, Catania M, Frick A. 2017. Altered surface mGluR5
    dynamics provoke synaptic NMDAR dysfunction and cognitive defects in Fmr1 knockout
    mice. Nature Communications. 8(1), 1103.
  mla: Aloisi, Elisabetta, et al. “Altered Surface MGluR5 Dynamics Provoke Synaptic
    NMDAR Dysfunction and Cognitive Defects in Fmr1 Knockout Mice.” <i>Nature Communications</i>,
    vol. 8, no. 1, 1103, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/s41467-017-01191-2">10.1038/s41467-017-01191-2</a>.
  short: E. Aloisi, K. Le Corf, J. Dupuis, P. Zhang, M. Ginger, V. Labrousse, M. Spatuzza,
    M. Georg Haberl, L. Costa, R. Shigemoto, A. Tappe Theodor, F. Drago, P. Vincenzo
    Piazza, C. Mulle, L. Groc, L. Ciranna, M. Catania, A. Frick, Nature Communications
    8 (2017).
date_created: 2018-12-11T11:48:17Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2023-09-27T12:27:30Z
day: '01'
ddc:
- '571'
department:
- _id: RySh
doi: 10.1038/s41467-017-01191-2
external_id:
  isi:
  - '000413571300004'
file:
- access_level: open_access
  checksum: 99ceee57549dc0461e3adfc037ec70a9
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:17:32Z
  date_updated: 2020-07-14T12:47:58Z
  file_id: '5287'
  file_name: IST-2017-915-v1+1_s41467-017-01191-2.pdf
  file_size: 1841650
  relation: main_file
file_date_updated: 2020-07-14T12:47:58Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6921'
pubrep_id: '915'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Altered surface mGluR5 dynamics provoke synaptic NMDAR dysfunction and cognitive
  defects in Fmr1 knockout mice
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
---
_id: '747'
abstract:
- lang: eng
  text: Bradykinin (BK), a component of the kallikrein-kininogen-kinin system exerts
    multiple effects via B1 and B2 receptor activation. In the cardiovascular system,
    bradykinin has cardioprotective and vasodilator properties. We investigated the
    effect of BK on cardiac-projecting neurons of nucleus ambiguus, a key site for
    the parasympathetic cardiac regulation. BK produced a dose-dependent increase
    in cytosolic Ca2+ concentration. Pretreatment with HOE140, a B2 receptor antagonist,
    but not with R715, a B1 receptor antagonist, abolished the response to BK. A selective
    B2 receptor agonist, but not a B1 receptor agonist, elicited an increase in cytosolic
    Ca2+ similarly to BK. Inhibition of N-type voltage-gated Ca2+ channels with ω-conotoxin
    GVIA had no effect on the Ca2+ signal produced by BK, while pretreatment with
    ω-conotoxin MVIIC, a blocker of P/Q-type of Ca2+ channels, significantly diminished
    the effect of BK. Pretreatment with xestospongin C and 2-aminoethoxydiphenyl borate,
    antagonists of inositol 1,4,5-trisphosphate receptors, abolished the response
    to BK. Inhibition of ryanodine receptors reduced the BK-induced Ca2+ increase,
    while disruption of lysosomal Ca2+ stores with bafilomycin A1 did not affect the
    response. BK produced a dose-dependent depolarization of nucleus ambiguus neurons,
    which was prevented by the B2 receptor antagonist. In vivo studies indicate that
    microinjection of BK into nucleus ambiguus elicited bradycardia in conscious rats
    via B2 receptors. In summary, in cardiac vagal neurons of nucleus ambiguus, BK
    activates B2 receptors promoting Ca2+ influx and Ca2+ release from endoplasmic
    reticulum, and membrane depolarization; these effects are translated in vivo by
    bradycardia.
article_processing_charge: No
article_type: original
author:
- first_name: Eugen
  full_name: Brǎiloiu, Eugen
  last_name: Brǎiloiu
- first_name: Matthew
  full_name: Mcguire, Matthew
  last_name: Mcguire
- first_name: Shadaria
  full_name: Shuler, Shadaria
  last_name: Shuler
- first_name: Elena
  full_name: Deliu, Elena
  id: 37A40D7E-F248-11E8-B48F-1D18A9856A87
  last_name: Deliu
  orcid: 0000-0002-7370-5293
- first_name: Jeffrey
  full_name: Barr, Jeffrey
  last_name: Barr
- first_name: Mary
  full_name: Abood, Mary
  last_name: Abood
- first_name: Gabriela
  full_name: Brailoiu, Gabriela
  last_name: Brailoiu
citation:
  ama: Brǎiloiu E, Mcguire M, Shuler S, et al. Modulation of cardiac vagal tone by
    bradykinin acting on nucleus ambiguus. <i>Neuroscience</i>. 2017;365:23-32. doi:<a
    href="https://doi.org/10.1016/j.neuroscience.2017.09.034">10.1016/j.neuroscience.2017.09.034</a>
  apa: Brǎiloiu, E., Mcguire, M., Shuler, S., Deliu, E., Barr, J., Abood, M., &#38;
    Brailoiu, G. (2017). Modulation of cardiac vagal tone by bradykinin acting on
    nucleus ambiguus. <i>Neuroscience</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuroscience.2017.09.034">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>
  chicago: Brǎiloiu, Eugen, Matthew Mcguire, Shadaria Shuler, Elena Deliu, Jeffrey
    Barr, Mary Abood, and Gabriela Brailoiu. “Modulation of Cardiac Vagal Tone by
    Bradykinin Acting on Nucleus Ambiguus.” <i>Neuroscience</i>. Elsevier, 2017. <a
    href="https://doi.org/10.1016/j.neuroscience.2017.09.034">https://doi.org/10.1016/j.neuroscience.2017.09.034</a>.
  ieee: E. Brǎiloiu <i>et al.</i>, “Modulation of cardiac vagal tone by bradykinin
    acting on nucleus ambiguus,” <i>Neuroscience</i>, vol. 365. Elsevier, pp. 23–32,
    2017.
  ista: Brǎiloiu E, Mcguire M, Shuler S, Deliu E, Barr J, Abood M, Brailoiu G. 2017.
    Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus. Neuroscience.
    365, 23–32.
  mla: Brǎiloiu, Eugen, et al. “Modulation of Cardiac Vagal Tone by Bradykinin Acting
    on Nucleus Ambiguus.” <i>Neuroscience</i>, vol. 365, Elsevier, 2017, pp. 23–32,
    doi:<a href="https://doi.org/10.1016/j.neuroscience.2017.09.034">10.1016/j.neuroscience.2017.09.034</a>.
  short: E. Brǎiloiu, M. Mcguire, S. Shuler, E. Deliu, J. Barr, M. Abood, G. Brailoiu,
    Neuroscience 365 (2017) 23–32.
date_created: 2018-12-11T11:48:17Z
date_published: 2017-12-04T00:00:00Z
date_updated: 2023-09-27T12:26:59Z
day: '04'
department:
- _id: GaNo
doi: 10.1016/j.neuroscience.2017.09.034
external_id:
  isi:
  - '000415966200003'
  pmid:
  - '28951324'
intvolume: '       365'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798458
month: '12'
oa: 1
oa_version: Submitted Version
page: 23 - 32
pmid: 1
publication: Neuroscience
publication_identifier:
  issn:
  - '03064522'
publication_status: published
publisher: Elsevier
publist_id: '6911'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modulation of cardiac vagal tone by bradykinin acting on nucleus ambiguus
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 365
year: '2017'
...
---
_id: '749'
abstract:
- lang: eng
  text: 'Synaptotagmin 7 (Syt7) is thought to be a Ca2+ sensor that mediates asynchronous
    transmitter release and facilitation at synapses. However, Syt7 is strongly expressed
    in fast-spiking, parvalbumin-expressing GABAergic interneurons, and the output
    synapses of these neurons produce only minimal asynchronous release and show depression
    rather than facilitation. To resolve this apparent contradiction, we examined
    the effects of genetic elimination of Syt7 on synaptic transmission at the GABAergic
    basket cell (BC)-Purkinje cell (PC) synapse in cerebellum. Our results indicate
    that at the BC-PC synapse, Syt7 contributes to asynchronous release, pool replenishment,
    and facilitation. In combination, these three effects ensure efficient transmitter
    release during high-frequency activity and guarantee frequency independence of
    inhibition. Our results identify a distinct function of Syt7: ensuring the efficiency
    of high-frequency inhibitory synaptic transmission'
acknowledged_ssus:
- _id: PreCl
article_processing_charge: No
author:
- first_name: Chong
  full_name: Chen, Chong
  id: 3DFD581A-F248-11E8-B48F-1D18A9856A87
  last_name: Chen
- first_name: Rachel
  full_name: Satterfield, Rachel
  last_name: Satterfield
- first_name: Samuel
  full_name: Young, Samuel
  last_name: Young
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: Chen C, Satterfield R, Young S, Jonas PM. Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses.
    <i>Cell Reports</i>. 2017;21(8):2082-2089. doi:<a href="https://doi.org/10.1016/j.celrep.2017.10.122">10.1016/j.celrep.2017.10.122</a>
  apa: Chen, C., Satterfield, R., Young, S., &#38; Jonas, P. M. (2017). Triple function
    of Synaptotagmin 7 ensures efficiency of high-frequency transmission at central
    GABAergic synapses. <i>Cell Reports</i>. Cell Press. <a href="https://doi.org/10.1016/j.celrep.2017.10.122">https://doi.org/10.1016/j.celrep.2017.10.122</a>
  chicago: Chen, Chong, Rachel Satterfield, Samuel Young, and Peter M Jonas. “Triple
    Function of Synaptotagmin 7 Ensures Efficiency of High-Frequency Transmission
    at Central GABAergic Synapses.” <i>Cell Reports</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.celrep.2017.10.122">https://doi.org/10.1016/j.celrep.2017.10.122</a>.
  ieee: C. Chen, R. Satterfield, S. Young, and P. M. Jonas, “Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses,”
    <i>Cell Reports</i>, vol. 21, no. 8. Cell Press, pp. 2082–2089, 2017.
  ista: Chen C, Satterfield R, Young S, Jonas PM. 2017. Triple function of Synaptotagmin
    7 ensures efficiency of high-frequency transmission at central GABAergic synapses.
    Cell Reports. 21(8), 2082–2089.
  mla: Chen, Chong, et al. “Triple Function of Synaptotagmin 7 Ensures Efficiency
    of High-Frequency Transmission at Central GABAergic Synapses.” <i>Cell Reports</i>,
    vol. 21, no. 8, Cell Press, 2017, pp. 2082–89, doi:<a href="https://doi.org/10.1016/j.celrep.2017.10.122">10.1016/j.celrep.2017.10.122</a>.
  short: C. Chen, R. Satterfield, S. Young, P.M. Jonas, Cell Reports 21 (2017) 2082–2089.
date_created: 2018-12-11T11:48:18Z
date_published: 2017-11-21T00:00:00Z
date_updated: 2023-09-27T12:26:04Z
day: '21'
ddc:
- '570'
- '571'
department:
- _id: PeJo
doi: 10.1016/j.celrep.2017.10.122
ec_funded: 1
external_id:
  isi:
  - '000416216700007'
file:
- access_level: open_access
  checksum: a6afa3764909bf6edafa07982d8e1cee
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:14Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '4737'
  file_name: IST-2017-874-v1+1_PIIS2211124717316029.pdf
  file_size: 2759195
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '8'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 2082 - 2089
project:
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P24909-B24
  name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
publication: Cell Reports
publication_identifier:
  issn:
  - '22111247'
publication_status: published
publisher: Cell Press
publist_id: '6907'
pubrep_id: '874'
quality_controlled: '1'
related_material:
  record:
  - id: '324'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Triple function of Synaptotagmin 7 ensures efficiency of high-frequency transmission
  at central GABAergic synapses
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2017'
...
---
_id: '750'
abstract:
- lang: eng
  text: Modern communication technologies allow first responders to contact thousands
    of potential volunteers simultaneously for support during a crisis or disaster
    event. However, such volunteer efforts must be well coordinated and monitored,
    in order to offer an effective relief to the professionals. In this paper we extend
    earlier work on optimally assigning volunteers to selected landmark locations.
    In particular, we emphasize the aspect that obtaining good assignments requires
    not only advanced computational tools, but also a realistic measure of distance
    between volunteers and landmarks. Specifically, we propose the use of the Open
    Street Map (OSM) driving distance instead of he previously used flight distance.
    We find the OSM driving distance to be better aligned with the interests of volunteers
    and first responders. Furthermore, we show that relying on the flying distance
    leads to a substantial underestimation of the number of required volunteers, causing
    negative side effects in case of an actual crisis situation.
author:
- first_name: Jasmin
  full_name: Pielorz, Jasmin
  id: 49BC895A-F248-11E8-B48F-1D18A9856A87
  last_name: Pielorz
- first_name: Matthias
  full_name: Prandtstetter, Matthias
  last_name: Prandtstetter
- first_name: Markus
  full_name: Straub, Markus
  last_name: Straub
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Pielorz J, Prandtstetter M, Straub M, Lampert C. Optimal geospatial volunteer
    allocation needs realistic distances. In: <i>2017 IEEE International Conference
    on Big Data</i>. IEEE; 2017:3760-3763. doi:<a href="https://doi.org/10.1109/BigData.2017.8258375">10.1109/BigData.2017.8258375</a>'
  apa: 'Pielorz, J., Prandtstetter, M., Straub, M., &#38; Lampert, C. (2017). Optimal
    geospatial volunteer allocation needs realistic distances. In <i>2017 IEEE International
    Conference on Big Data</i> (pp. 3760–3763). Boston, MA, United States: IEEE. <a
    href="https://doi.org/10.1109/BigData.2017.8258375">https://doi.org/10.1109/BigData.2017.8258375</a>'
  chicago: Pielorz, Jasmin, Matthias Prandtstetter, Markus Straub, and Christoph Lampert.
    “Optimal Geospatial Volunteer Allocation Needs Realistic Distances.” In <i>2017
    IEEE International Conference on Big Data</i>, 3760–63. IEEE, 2017. <a href="https://doi.org/10.1109/BigData.2017.8258375">https://doi.org/10.1109/BigData.2017.8258375</a>.
  ieee: J. Pielorz, M. Prandtstetter, M. Straub, and C. Lampert, “Optimal geospatial
    volunteer allocation needs realistic distances,” in <i>2017 IEEE International
    Conference on Big Data</i>, Boston, MA, United States, 2017, pp. 3760–3763.
  ista: Pielorz J, Prandtstetter M, Straub M, Lampert C. 2017. Optimal geospatial
    volunteer allocation needs realistic distances. 2017 IEEE International Conference
    on Big Data. Big Data, 3760–3763.
  mla: Pielorz, Jasmin, et al. “Optimal Geospatial Volunteer Allocation Needs Realistic
    Distances.” <i>2017 IEEE International Conference on Big Data</i>, IEEE, 2017,
    pp. 3760–63, doi:<a href="https://doi.org/10.1109/BigData.2017.8258375">10.1109/BigData.2017.8258375</a>.
  short: J. Pielorz, M. Prandtstetter, M. Straub, C. Lampert, in:, 2017 IEEE International
    Conference on Big Data, IEEE, 2017, pp. 3760–3763.
conference:
  end_date: 2017-12-14
  location: Boston, MA, United States
  name: Big Data
  start_date: 2017-12-11
date_created: 2018-12-11T11:48:18Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2021-01-12T08:13:55Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/BigData.2017.8258375
language:
- iso: eng
month: '12'
oa_version: None
page: 3760 - 3763
publication: 2017 IEEE International Conference on Big Data
publication_identifier:
  isbn:
  - 978-153862714-3
publication_status: published
publisher: IEEE
publist_id: '6906'
quality_controlled: '1'
scopus_import: 1
status: public
title: Optimal geospatial volunteer allocation needs realistic distances
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2017'
...
---
_id: '751'
abstract:
- lang: eng
  text: The basement membrane (BM) is a thin layer of extracellular matrix (ECM) beneath
    nearly all epithelial cell types that is critical for cellular and tissue function.
    It is composed of numerous components conserved among all bilaterians [1]; however,
    it is unknown how all of these components are generated and subsequently constructed
    to form a fully mature BM in the living animal. Although BM formation is thought
    to simply involve a process of self-assembly [2], this concept suffers from a
    number of logistical issues when considering its construction in vivo. First,
    incorporation of BM components appears to be hierarchical [3-5], yet it is unclear
    whether their production during embryogenesis must also be regulated in a temporal
    fashion. Second, many BM proteins are produced not only by the cells residing
    on the BM but also by surrounding cell types [6-9], and it is unclear how large,
    possibly insoluble protein complexes [10] are delivered into the matrix. Here
    we exploit our ability to live image and genetically dissect de novo BM formation
    during Drosophila development. This reveals that there is a temporal hierarchy
    of BM protein production that is essential for proper component incorporation.
    Furthermore, we show that BM components require secretion by migrating macrophages
    (hemocytes) during their developmental dispersal, which is critical for embryogenesis.
    Indeed, hemocyte migration is essential to deliver a subset of ECM components
    evenly throughout the embryo. This reveals that de novo BM construction requires
    a combination of both production and distribution logistics allowing for the timely
    delivery of core components.
article_processing_charge: No
author:
- first_name: Yutaka
  full_name: Matsubayashi, Yutaka
  last_name: Matsubayashi
- first_name: Adam
  full_name: Louani, Adam
  last_name: Louani
- first_name: Anca
  full_name: Dragu, Anca
  last_name: Dragu
- first_name: Besaiz
  full_name: Sanchez Sanchez, Besaiz
  last_name: Sanchez Sanchez
- first_name: Eduardo
  full_name: Serna Morales, Eduardo
  last_name: Serna Morales
- first_name: Lawrence
  full_name: Yolland, Lawrence
  last_name: Yolland
- first_name: Attila
  full_name: György, Attila
  id: 3BCEDBE0-F248-11E8-B48F-1D18A9856A87
  last_name: György
  orcid: 0000-0002-1819-198X
- first_name: Gema
  full_name: Vizcay, Gema
  last_name: Vizcay
- first_name: Roland
  full_name: Fleck, Roland
  last_name: Fleck
- first_name: John
  full_name: Heddleston, John
  last_name: Heddleston
- first_name: Teng
  full_name: Chew, Teng
  last_name: Chew
- first_name: Daria E
  full_name: Siekhaus, Daria E
  id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
  last_name: Siekhaus
  orcid: 0000-0001-8323-8353
- first_name: Brian
  full_name: Stramer, Brian
  last_name: Stramer
citation:
  ama: Matsubayashi Y, Louani A, Dragu A, et al. A moving source of matrix components
    is essential for De Novo basement membrane formation. <i>Current Biology</i>.
    2017;27(22):3526-3534e.4. doi:<a href="https://doi.org/10.1016/j.cub.2017.10.001">10.1016/j.cub.2017.10.001</a>
  apa: Matsubayashi, Y., Louani, A., Dragu, A., Sanchez Sanchez, B., Serna Morales,
    E., Yolland, L., … Stramer, B. (2017). A moving source of matrix components is
    essential for De Novo basement membrane formation. <i>Current Biology</i>. Cell
    Press. <a href="https://doi.org/10.1016/j.cub.2017.10.001">https://doi.org/10.1016/j.cub.2017.10.001</a>
  chicago: Matsubayashi, Yutaka, Adam Louani, Anca Dragu, Besaiz Sanchez Sanchez,
    Eduardo Serna Morales, Lawrence Yolland, Attila György, et al. “A Moving Source
    of Matrix Components Is Essential for De Novo Basement Membrane Formation.” <i>Current
    Biology</i>. Cell Press, 2017. <a href="https://doi.org/10.1016/j.cub.2017.10.001">https://doi.org/10.1016/j.cub.2017.10.001</a>.
  ieee: Y. Matsubayashi <i>et al.</i>, “A moving source of matrix components is essential
    for De Novo basement membrane formation,” <i>Current Biology</i>, vol. 27, no.
    22. Cell Press, p. 3526–3534e.4, 2017.
  ista: Matsubayashi Y, Louani A, Dragu A, Sanchez Sanchez B, Serna Morales E, Yolland
    L, György A, Vizcay G, Fleck R, Heddleston J, Chew T, Siekhaus DE, Stramer B.
    2017. A moving source of matrix components is essential for De Novo basement membrane
    formation. Current Biology. 27(22), 3526–3534e.4.
  mla: Matsubayashi, Yutaka, et al. “A Moving Source of Matrix Components Is Essential
    for De Novo Basement Membrane Formation.” <i>Current Biology</i>, vol. 27, no.
    22, Cell Press, 2017, p. 3526–3534e.4, doi:<a href="https://doi.org/10.1016/j.cub.2017.10.001">10.1016/j.cub.2017.10.001</a>.
  short: Y. Matsubayashi, A. Louani, A. Dragu, B. Sanchez Sanchez, E. Serna Morales,
    L. Yolland, A. György, G. Vizcay, R. Fleck, J. Heddleston, T. Chew, D.E. Siekhaus,
    B. Stramer, Current Biology 27 (2017) 3526–3534e.4.
date_created: 2018-12-11T11:48:18Z
date_published: 2017-11-09T00:00:00Z
date_updated: 2023-09-27T12:25:31Z
day: '09'
ddc:
- '570'
- '576'
department:
- _id: DaSi
doi: 10.1016/j.cub.2017.10.001
external_id:
  isi:
  - '000415815800031'
file:
- access_level: open_access
  checksum: 264cf6c6c3551486ba5ea786850e000a
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:09:45Z
  date_updated: 2020-07-14T12:47:59Z
  file_id: '4770'
  file_name: IST-2017-875-v1+1_1-s2.0-S0960982217312691-main.pdf
  file_size: 4770657
  relation: main_file
file_date_updated: 2020-07-14T12:47:59Z
has_accepted_license: '1'
intvolume: '        27'
isi: 1
issue: '22'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 3526 - 3534e.4
publication: Current Biology
publication_identifier:
  issn:
  - '09609822'
publication_status: published
publisher: Cell Press
publist_id: '6905'
pubrep_id: '875'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A moving source of matrix components is essential for De Novo basement membrane
  formation
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 27
year: '2017'
...
---
_id: '791'
abstract:
- lang: eng
  text: 'Consider the following random process: we are given n queues, into which
    elements of increasing labels are inserted uniformly at random. To remove an element,
    we pick two queues at random, and remove the element of lower label (higher priority)
    among the two. The cost of a removal is the rank of the label removed, among labels
    still present in any of the queues, that is, the distance from the optimal choice
    at each step. Variants of this strategy are prevalent in state-of-the-art concurrent
    priority queue implementations. Nonetheless, it is not known whether such implementations
    provide any rank guarantees, even in a sequential model. We answer this question,
    showing that this strategy provides surprisingly strong guarantees: Although the
    single-choice process, where we always insert and remove from a single randomly
    chosen queue, has degrading cost, going to infinity as we increase the number
    of steps, in the two choice process, the expected rank of a removed element is
    O(n) while the expected worst-case cost is O(n log n). These bounds are tight,
    and hold irrespective of the number of steps for which we run the process. The
    argument is based on a new technical connection between &quot;heavily loaded&quot;
    balls-into-bins processes and priority scheduling. Our analytic results inspire
    a new concurrent priority queue implementation, which improves upon the state
    of the art in terms of practical performance.'
article_processing_charge: No
author:
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
- first_name: Justin
  full_name: Kopinsky, Justin
  last_name: Kopinsky
- first_name: Jerry
  full_name: Li, Jerry
  last_name: Li
- first_name: Giorgi
  full_name: Nadiradze, Giorgi
  id: 3279A00C-F248-11E8-B48F-1D18A9856A87
  last_name: Nadiradze
  orcid: 0000-0001-5634-0731
citation:
  ama: 'Alistarh D-A, Kopinsky J, Li J, Nadiradze G. The power of choice in priority
    scheduling. In: <i>Proceedings of the ACM Symposium on Principles of Distributed
    Computing</i>. Vol Part F129314. ACM; 2017:283-292. doi:<a href="https://doi.org/10.1145/3087801.3087810">10.1145/3087801.3087810</a>'
  apa: 'Alistarh, D.-A., Kopinsky, J., Li, J., &#38; Nadiradze, G. (2017). The power
    of choice in priority scheduling. In <i>Proceedings of the ACM Symposium on Principles
    of Distributed Computing</i> (Vol. Part F129314, pp. 283–292). Washington, WA,
    USA: ACM. <a href="https://doi.org/10.1145/3087801.3087810">https://doi.org/10.1145/3087801.3087810</a>'
  chicago: Alistarh, Dan-Adrian, Justin Kopinsky, Jerry Li, and Giorgi Nadiradze.
    “The Power of Choice in Priority Scheduling.” In <i>Proceedings of the ACM Symposium
    on Principles of Distributed Computing</i>, Part F129314:283–92. ACM, 2017. <a
    href="https://doi.org/10.1145/3087801.3087810">https://doi.org/10.1145/3087801.3087810</a>.
  ieee: D.-A. Alistarh, J. Kopinsky, J. Li, and G. Nadiradze, “The power of choice
    in priority scheduling,” in <i>Proceedings of the ACM Symposium on Principles
    of Distributed Computing</i>, Washington, WA, USA, 2017, vol. Part F129314, pp.
    283–292.
  ista: 'Alistarh D-A, Kopinsky J, Li J, Nadiradze G. 2017. The power of choice in
    priority scheduling. Proceedings of the ACM Symposium on Principles of Distributed
    Computing. PODC: Principles of Distributed Computing vol. Part F129314, 283–292.'
  mla: Alistarh, Dan-Adrian, et al. “The Power of Choice in Priority Scheduling.”
    <i>Proceedings of the ACM Symposium on Principles of Distributed Computing</i>,
    vol. Part F129314, ACM, 2017, pp. 283–92, doi:<a href="https://doi.org/10.1145/3087801.3087810">10.1145/3087801.3087810</a>.
  short: D.-A. Alistarh, J. Kopinsky, J. Li, G. Nadiradze, in:, Proceedings of the
    ACM Symposium on Principles of Distributed Computing, ACM, 2017, pp. 283–292.
conference:
  end_date: 2017-07-27
  location: Washington, WA, USA
  name: 'PODC: Principles of Distributed Computing'
  start_date: 2017-07-25
date_created: 2018-12-11T11:48:31Z
date_published: 2017-07-26T00:00:00Z
date_updated: 2023-09-27T12:17:59Z
day: '26'
department:
- _id: DaAl
doi: 10.1145/3087801.3087810
external_id:
  isi:
  - '000462995000035'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1706.04178
month: '07'
oa: 1
oa_version: Submitted Version
page: 283 - 292
publication: Proceedings of the ACM Symposium on Principles of Distributed Computing
publication_identifier:
  isbn:
  - 978-145034992-5
publication_status: published
publisher: ACM
publist_id: '6864'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The power of choice in priority scheduling
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: Part F129314
year: '2017'
...
---
_id: '792'
abstract:
- lang: eng
  text: The chaotic dynamics of low-dimensional systems, such as Lorenz or Rössler
    flows, is guided by the infinity of periodic orbits embedded in their strange
    attractors. Whether this is also the case for the infinite-dimensional dynamics
    of Navier–Stokes equations has long been speculated, and is a topic of ongoing
    study. Periodic and relative periodic solutions have been shown to be involved
    in transitions to turbulence. Their relevance to turbulent dynamics – specifically,
    whether periodic orbits play the same role in high-dimensional nonlinear systems
    like the Navier–Stokes equations as they do in lower-dimensional systems – is
    the focus of the present investigation. We perform here a detailed study of pipe
    flow relative periodic orbits with energies and mean dissipations close to turbulent
    values. We outline several approaches to reduction of the translational symmetry
    of the system. We study pipe flow in a minimal computational cell at   Re=2500,
    and report a library of invariant solutions found with the aid of the method of
    slices. Detailed study of the unstable manifolds of a sample of these solutions
    is consistent with the picture that relative periodic orbits are embedded in the
    chaotic saddle and that they guide the turbulent dynamics.
article_processing_charge: No
author:
- first_name: Nazmi B
  full_name: Budanur, Nazmi B
  id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
  last_name: Budanur
  orcid: 0000-0003-0423-5010
- first_name: Kimberly
  full_name: Short, Kimberly
  last_name: Short
- first_name: Mohammad
  full_name: Farazmand, Mohammad
  last_name: Farazmand
- first_name: Ashley
  full_name: Willis, Ashley
  last_name: Willis
- first_name: Predrag
  full_name: Cvitanović, Predrag
  last_name: Cvitanović
citation:
  ama: Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. Relative periodic
    orbits form the backbone of turbulent pipe flow. <i>Journal of Fluid Mechanics</i>.
    2017;833:274-301. doi:<a href="https://doi.org/10.1017/jfm.2017.699">10.1017/jfm.2017.699</a>
  apa: Budanur, N. B., Short, K., Farazmand, M., Willis, A., &#38; Cvitanović, P.
    (2017). Relative periodic orbits form the backbone of turbulent pipe flow. <i>Journal
    of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2017.699">https://doi.org/10.1017/jfm.2017.699</a>
  chicago: Budanur, Nazmi B, Kimberly Short, Mohammad Farazmand, Ashley Willis, and
    Predrag Cvitanović. “Relative Periodic Orbits Form the Backbone of Turbulent Pipe
    Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2017. <a
    href="https://doi.org/10.1017/jfm.2017.699">https://doi.org/10.1017/jfm.2017.699</a>.
  ieee: N. B. Budanur, K. Short, M. Farazmand, A. Willis, and P. Cvitanović, “Relative
    periodic orbits form the backbone of turbulent pipe flow,” <i>Journal of Fluid
    Mechanics</i>, vol. 833. Cambridge University Press, pp. 274–301, 2017.
  ista: Budanur NB, Short K, Farazmand M, Willis A, Cvitanović P. 2017. Relative periodic
    orbits form the backbone of turbulent pipe flow. Journal of Fluid Mechanics. 833,
    274–301.
  mla: Budanur, Nazmi B., et al. “Relative Periodic Orbits Form the Backbone of Turbulent
    Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 833, Cambridge University
    Press, 2017, pp. 274–301, doi:<a href="https://doi.org/10.1017/jfm.2017.699">10.1017/jfm.2017.699</a>.
  short: N.B. Budanur, K. Short, M. Farazmand, A. Willis, P. Cvitanović, Journal of
    Fluid Mechanics 833 (2017) 274–301.
date_created: 2018-12-11T11:48:32Z
date_published: 2017-12-25T00:00:00Z
date_updated: 2023-09-27T12:17:35Z
day: '25'
department:
- _id: BjHo
doi: 10.1017/jfm.2017.699
external_id:
  isi:
  - '000414641700001'
intvolume: '       833'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.03720
month: '12'
oa: 1
oa_version: Submitted Version
page: 274 - 301
project:
- _id: 25636330-B435-11E9-9278-68D0E5697425
  grant_number: 11-NSF-1070
  name: ROOTS Genome-wide Analysis of Root Traits
publication: Journal of Fluid Mechanics
publication_identifier:
  issn:
  - '00221120'
publication_status: published
publisher: Cambridge University Press
publist_id: '6862'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Relative periodic orbits form the backbone of turbulent pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 833
year: '2017'
...
---
_id: '793'
abstract:
- lang: eng
  text: 'Let P be a finite point set in the plane. A cordinary triangle in P is a
    subset of P consisting of three non-collinear points such that each of the three
    lines determined by the three points contains at most c points of P . Motivated
    by a question of Erdös, and answering a question of de Zeeuw, we prove that there
    exists a constant c &gt; 0such that P contains a c-ordinary triangle, provided
    that P is not contained in the union of two lines. Furthermore, the number of
    c-ordinary triangles in P is Ω(| P |). '
article_processing_charge: No
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Hossein
  full_name: Mojarrad, Hossein
  last_name: Mojarrad
- first_name: Márton
  full_name: Naszódi, Márton
  last_name: Naszódi
- first_name: József
  full_name: Solymosi, József
  last_name: Solymosi
- first_name: Sebastian
  full_name: Stich, Sebastian
  last_name: Stich
- first_name: May
  full_name: Szedlák, May
  last_name: Szedlák
citation:
  ama: 'Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. On the existence
    of ordinary triangles. <i>Computational Geometry: Theory and Applications</i>.
    2017;66:28-31. doi:<a href="https://doi.org/10.1016/j.comgeo.2017.07.002">10.1016/j.comgeo.2017.07.002</a>'
  apa: 'Fulek, R., Mojarrad, H., Naszódi, M., Solymosi, J., Stich, S., &#38; Szedlák,
    M. (2017). On the existence of ordinary triangles. <i>Computational Geometry:
    Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.comgeo.2017.07.002">https://doi.org/10.1016/j.comgeo.2017.07.002</a>'
  chicago: 'Fulek, Radoslav, Hossein Mojarrad, Márton Naszódi, József Solymosi, Sebastian
    Stich, and May Szedlák. “On the Existence of Ordinary Triangles.” <i>Computational
    Geometry: Theory and Applications</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.comgeo.2017.07.002">https://doi.org/10.1016/j.comgeo.2017.07.002</a>.'
  ieee: 'R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, and M. Szedlák,
    “On the existence of ordinary triangles,” <i>Computational Geometry: Theory and
    Applications</i>, vol. 66. Elsevier, pp. 28–31, 2017.'
  ista: 'Fulek R, Mojarrad H, Naszódi M, Solymosi J, Stich S, Szedlák M. 2017. On
    the existence of ordinary triangles. Computational Geometry: Theory and Applications.
    66, 28–31.'
  mla: 'Fulek, Radoslav, et al. “On the Existence of Ordinary Triangles.” <i>Computational
    Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 28–31, doi:<a
    href="https://doi.org/10.1016/j.comgeo.2017.07.002">10.1016/j.comgeo.2017.07.002</a>.'
  short: 'R. Fulek, H. Mojarrad, M. Naszódi, J. Solymosi, S. Stich, M. Szedlák, Computational
    Geometry: Theory and Applications 66 (2017) 28–31.'
date_created: 2018-12-11T11:48:32Z
date_published: 2017-01-01T00:00:00Z
date_updated: 2023-09-27T12:15:16Z
day: '01'
department:
- _id: UlWa
doi: 10.1016/j.comgeo.2017.07.002
ec_funded: 1
external_id:
  isi:
  - '000412039700003'
intvolume: '        66'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1701.08183
month: '01'
oa: 1
oa_version: Submitted Version
page: 28 - 31
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: 'Computational Geometry: Theory and Applications'
publication_identifier:
  issn:
  - '09257721'
publication_status: published
publisher: Elsevier
publist_id: '6861'
quality_controlled: '1'
status: public
title: On the existence of ordinary triangles
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 66
year: '2017'
...
---
_id: '794'
abstract:
- lang: eng
  text: We show that c-planarity is solvable in quadratic time for flat clustered
    graphs with three clusters if the combinatorial embedding of the underlying graph
    is fixed. In simpler graph-theoretical terms our result can be viewed as follows.
    Given a graph G with the vertex set partitioned into three parts embedded on a
    2-sphere, our algorithm decides if we can augment G by adding edges without creating
    an edge-crossing so that in the resulting spherical graph the vertices of each
    part induce a connected sub-graph. We proceed by a reduction to the problem of
    testing the existence of a perfect matching in planar bipartite graphs. We formulate
    our result in a slightly more general setting of cyclic clustered graphs, i.e.,
    the simple graph obtained by contracting each cluster, where we disregard loops
    and multi-edges, is a cycle.
acknowledgement: I would like to thank Jan Kynčl, Dömötör Pálvölgyi and anonymous
  referees for many comments and suggestions that helped to improve the presentation
  of the result.
article_processing_charge: No
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
citation:
  ama: 'Fulek R. C-planarity of embedded cyclic c-graphs. <i>Computational Geometry:
    Theory and Applications</i>. 2017;66:1-13. doi:<a href="https://doi.org/10.1016/j.comgeo.2017.06.016">10.1016/j.comgeo.2017.06.016</a>'
  apa: 'Fulek, R. (2017). C-planarity of embedded cyclic c-graphs. <i>Computational
    Geometry: Theory and Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.comgeo.2017.06.016">https://doi.org/10.1016/j.comgeo.2017.06.016</a>'
  chicago: 'Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational
    Geometry: Theory and Applications</i>. Elsevier, 2017. <a href="https://doi.org/10.1016/j.comgeo.2017.06.016">https://doi.org/10.1016/j.comgeo.2017.06.016</a>.'
  ieee: 'R. Fulek, “C-planarity of embedded cyclic c-graphs,” <i>Computational Geometry:
    Theory and Applications</i>, vol. 66. Elsevier, pp. 1–13, 2017.'
  ista: 'Fulek R. 2017. C-planarity of embedded cyclic c-graphs. Computational Geometry:
    Theory and Applications. 66, 1–13.'
  mla: 'Fulek, Radoslav. “C-Planarity of Embedded Cyclic c-Graphs.” <i>Computational
    Geometry: Theory and Applications</i>, vol. 66, Elsevier, 2017, pp. 1–13, doi:<a
    href="https://doi.org/10.1016/j.comgeo.2017.06.016">10.1016/j.comgeo.2017.06.016</a>.'
  short: 'R. Fulek, Computational Geometry: Theory and Applications 66 (2017) 1–13.'
date_created: 2018-12-11T11:48:32Z
date_published: 2017-12-01T00:00:00Z
date_updated: 2023-09-27T12:14:49Z
day: '01'
department:
- _id: UlWa
doi: 10.1016/j.comgeo.2017.06.016
external_id:
  isi:
  - '000412039700001'
intvolume: '        66'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1602.01346
month: '12'
oa: 1
oa_version: Preprint
page: 1 - 13
publication: 'Computational Geometry: Theory and Applications'
publication_status: published
publisher: Elsevier
publist_id: '6860'
quality_controlled: '1'
related_material:
  record:
  - id: '1165'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: C-planarity of embedded cyclic c-graphs
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 66
year: '2017'
...
---
_id: '795'
abstract:
- lang: eng
  text: 'We introduce a common generalization of the strong Hanani–Tutte theorem and
    the weak Hanani–Tutte theorem: if a graph G has a drawing D in the plane where
    every pair of independent edges crosses an even number of times, then G has a
    planar drawing preserving the rotation of each vertex whose incident edges cross
    each other evenly in D. The theorem is implicit in the proof of the strong Hanani–Tutte
    theorem by Pelsmajer, Schaefer and Štefankovič. We give a new, somewhat simpler
    proof.'
article_number: P3.18
article_processing_charge: No
article_type: original
author:
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Jan
  full_name: Kynčl, Jan
  last_name: Kynčl
- first_name: Dömötör
  full_name: Pálvölgyi, Dömötör
  last_name: Pálvölgyi
citation:
  ama: Fulek R, Kynčl J, Pálvölgyi D. Unified Hanani Tutte theorem. <i>Electronic
    Journal of Combinatorics</i>. 2017;24(3). doi:<a href="https://doi.org/10.37236/6663">10.37236/6663</a>
  apa: Fulek, R., Kynčl, J., &#38; Pálvölgyi, D. (2017). Unified Hanani Tutte theorem.
    <i>Electronic Journal of Combinatorics</i>. International Press. <a href="https://doi.org/10.37236/6663">https://doi.org/10.37236/6663</a>
  chicago: Fulek, Radoslav, Jan Kynčl, and Dömötör Pálvölgyi. “Unified Hanani Tutte
    Theorem.” <i>Electronic Journal of Combinatorics</i>. International Press, 2017.
    <a href="https://doi.org/10.37236/6663">https://doi.org/10.37236/6663</a>.
  ieee: R. Fulek, J. Kynčl, and D. Pálvölgyi, “Unified Hanani Tutte theorem,” <i>Electronic
    Journal of Combinatorics</i>, vol. 24, no. 3. International Press, 2017.
  ista: Fulek R, Kynčl J, Pálvölgyi D. 2017. Unified Hanani Tutte theorem. Electronic
    Journal of Combinatorics. 24(3), P3.18.
  mla: Fulek, Radoslav, et al. “Unified Hanani Tutte Theorem.” <i>Electronic Journal
    of Combinatorics</i>, vol. 24, no. 3, P3.18, International Press, 2017, doi:<a
    href="https://doi.org/10.37236/6663">10.37236/6663</a>.
  short: R. Fulek, J. Kynčl, D. Pálvölgyi, Electronic Journal of Combinatorics 24
    (2017).
date_created: 2018-12-11T11:48:32Z
date_published: 2017-07-28T00:00:00Z
date_updated: 2022-03-18T12:58:53Z
day: '28'
ddc:
- '000'
department:
- _id: UlWa
doi: 10.37236/6663
ec_funded: 1
file:
- access_level: open_access
  checksum: ef320cff0f062051e858f929be6a3581
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-18T14:04:08Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '5853'
  file_name: 2017_ElectrCombi_Fulek.pdf
  file_size: 236944
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '        24'
issue: '3'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Electronic Journal of Combinatorics
publication_identifier:
  issn:
  - '10778926'
publication_status: published
publisher: International Press
publist_id: '6859'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Unified Hanani Tutte theorem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 24
year: '2017'
...
---
_id: '796'
abstract:
- lang: eng
  text: We present the fabrication and characterization of an aluminum transmon qubit
    on a silicon-on-insulator substrate. Key to the qubit fabrication is the use of
    an anhydrous hydrofluoric vapor process which selectively removes the lossy silicon
    oxide buried underneath the silicon device layer. For a 5.6 GHz qubit measured
    dispersively by a 7.1 GHz resonator, we find T1 = 3.5 μs and T∗2 = 2.2 μs. This
    process in principle permits the co-fabrication of silicon photonic and mechanical
    elements, providing a route towards chip-scale integration of electro-opto-mechanical
    transducers for quantum networking of superconducting microwave quantum circuits.
    The additional processing steps are compatible with established fabrication techniques
    for aluminum transmon qubits on silicon.
acknowledgement: This work was supported by the AFOSR MURI Quantum Photonic Matter
  (Grant No. 16RT0696), the AFOSR MURI Wiring Quantum Networks with Mechanical Transducers
  (Grant No. FA9550-15-1-0015), the Institute for Quantum Information and Matter,
  an NSF Physics Frontiers Center (Grant No. PHY-1125565) with the support of the
  Gordon and Betty Moore Foundation, and the Kavli Nanoscience Institute at Caltech.
  A.J.K. acknowledges the IQIM Postdoctoral Fellowship.
article_number: '042603'
article_processing_charge: No
author:
- first_name: Andrew J
  full_name: Keller, Andrew J
  last_name: Keller
- first_name: Paul
  full_name: Dieterle, Paul
  last_name: Dieterle
- first_name: Michael
  full_name: Fang, Michael
  last_name: Fang
- first_name: Brett
  full_name: Berger, Brett
  last_name: Berger
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
citation:
  ama: Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. Al transmon qubits
    on silicon on insulator for quantum device integration. <i>Applied Physics Letters</i>.
    2017;111(4). doi:<a href="https://doi.org/10.1063/1.4994661">10.1063/1.4994661</a>
  apa: Keller, A. J., Dieterle, P., Fang, M., Berger, B., Fink, J. M., &#38; Painter,
    O. (2017). Al transmon qubits on silicon on insulator for quantum device integration.
    <i>Applied Physics Letters</i>. American Institute of Physics. <a href="https://doi.org/10.1063/1.4994661">https://doi.org/10.1063/1.4994661</a>
  chicago: Keller, Andrew J, Paul Dieterle, Michael Fang, Brett Berger, Johannes M
    Fink, and Oskar Painter. “Al Transmon Qubits on Silicon on Insulator for Quantum
    Device Integration.” <i>Applied Physics Letters</i>. American Institute of Physics,
    2017. <a href="https://doi.org/10.1063/1.4994661">https://doi.org/10.1063/1.4994661</a>.
  ieee: A. J. Keller, P. Dieterle, M. Fang, B. Berger, J. M. Fink, and O. Painter,
    “Al transmon qubits on silicon on insulator for quantum device integration,” <i>Applied
    Physics Letters</i>, vol. 111, no. 4. American Institute of Physics, 2017.
  ista: Keller AJ, Dieterle P, Fang M, Berger B, Fink JM, Painter O. 2017. Al transmon
    qubits on silicon on insulator for quantum device integration. Applied Physics
    Letters. 111(4), 042603.
  mla: Keller, Andrew J., et al. “Al Transmon Qubits on Silicon on Insulator for Quantum
    Device Integration.” <i>Applied Physics Letters</i>, vol. 111, no. 4, 042603,
    American Institute of Physics, 2017, doi:<a href="https://doi.org/10.1063/1.4994661">10.1063/1.4994661</a>.
  short: A.J. Keller, P. Dieterle, M. Fang, B. Berger, J.M. Fink, O. Painter, Applied
    Physics Letters 111 (2017).
date_created: 2018-12-11T11:48:33Z
date_published: 2017-07-01T00:00:00Z
date_updated: 2023-09-27T12:13:36Z
day: '01'
department:
- _id: JoFi
doi: 10.1063/1.4994661
external_id:
  isi:
  - '000406779700031'
intvolume: '       111'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1703.10195
month: '07'
oa: 1
oa_version: Submitted Version
publication: Applied Physics Letters
publication_identifier:
  issn:
  - '00036951'
publication_status: published
publisher: American Institute of Physics
publist_id: '6857'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Al transmon qubits on silicon on insulator for quantum device integration
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 111
year: '2017'
...
---
_id: '797'
abstract:
- lang: ger
  text: Phasenübergänge helfen beim Verständnis von Vielteilchensystemen in der Festkörperphysik
    und Fluiddynamik bis hin zur Teilchenphysik. Unserer internationalen Kollaboration
    ist es gelungen, einen neuartigen Phasenübergang in einem Quantensystem zu beobachten
    [1]. In einem Mikrowellenresonator konnte erstmals die spontane Zustandsänderung
    von undurchsichtig zu transparent nachgewiesen werden.
article_processing_charge: No
article_type: original
author:
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Fink JM. Photonenblockade aufgelöst. <i>Physik in unserer Zeit</i>. 2017;48(3):111-113.
    doi:<a href="https://doi.org/10.1002/piuz.201770305">10.1002/piuz.201770305</a>
  apa: Fink, J. M. (2017). Photonenblockade aufgelöst. <i>Physik in Unserer Zeit</i>.
    Wiley. <a href="https://doi.org/10.1002/piuz.201770305">https://doi.org/10.1002/piuz.201770305</a>
  chicago: Fink, Johannes M. “Photonenblockade Aufgelöst.” <i>Physik in Unserer Zeit</i>.
    Wiley, 2017. <a href="https://doi.org/10.1002/piuz.201770305">https://doi.org/10.1002/piuz.201770305</a>.
  ieee: J. M. Fink, “Photonenblockade aufgelöst,” <i>Physik in unserer Zeit</i>, vol.
    48, no. 3. Wiley, pp. 111–113, 2017.
  ista: Fink JM. 2017. Photonenblockade aufgelöst. Physik in unserer Zeit. 48(3),
    111–113.
  mla: Fink, Johannes M. “Photonenblockade Aufgelöst.” <i>Physik in Unserer Zeit</i>,
    vol. 48, no. 3, Wiley, 2017, pp. 111–13, doi:<a href="https://doi.org/10.1002/piuz.201770305">10.1002/piuz.201770305</a>.
  short: J.M. Fink, Physik in Unserer Zeit 48 (2017) 111–113.
date_created: 2018-12-11T11:48:33Z
date_published: 2017-05-01T00:00:00Z
date_updated: 2022-03-24T09:16:20Z
day: '01'
department:
- _id: JoFi
doi: 10.1002/piuz.201770305
intvolume: '        48'
issue: '3'
language:
- iso: eng
month: '05'
oa_version: None
page: 111 - 113
publication: Physik in unserer Zeit
publication_status: published
publisher: Wiley
publist_id: '6856'
quality_controlled: '1'
status: public
title: Photonenblockade aufgelöst
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2017'
...
---
_id: '798'
abstract:
- lang: eng
  text: Nonreciprocal circuit elements form an integral part of modern measurement
    and communication systems. Mathematically they require breaking of time-reversal
    symmetry, typically achieved using magnetic materials and more recently using
    the quantum Hall effect, parametric permittivity modulation or Josephson nonlinearities.
    Here we demonstrate an on-chip magnetic-free circulator based on reservoir-engineered
    electromechanic interactions. Directional circulation is achieved with controlled
    phase-sensitive interference of six distinct electro-mechanical signal conversion
    paths. The presented circulator is compact, its silicon-on-insulator platform
    is compatible with both superconducting qubits and silicon photonics, and its
    noise performance is close to the quantum limit. With a high dynamic range, a
    tunable bandwidth of up to 30 MHz and an in situ reconfigurability as beam splitter
    or wavelength converter, it could pave the way for superconducting qubit processors
    with multiplexed on-chip signal processing and readout.
article_number: '1304'
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Shabir
  full_name: Barzanjeh, Shabir
  id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
  last_name: Barzanjeh
  orcid: 0000-0003-0415-1423
- first_name: Matthias
  full_name: Wulf, Matthias
  id: 45598606-F248-11E8-B48F-1D18A9856A87
  last_name: Wulf
  orcid: 0000-0001-6613-1378
- first_name: Matilda
  full_name: Peruzzo, Matilda
  id: 3F920B30-F248-11E8-B48F-1D18A9856A87
  last_name: Peruzzo
  orcid: 0000-0002-3415-4628
- first_name: Mahmoud
  full_name: Kalaee, Mahmoud
  last_name: Kalaee
- first_name: Paul
  full_name: Dieterle, Paul
  last_name: Dieterle
- first_name: Oskar
  full_name: Painter, Oskar
  last_name: Painter
- first_name: Johannes M
  full_name: Fink, Johannes M
  id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
  last_name: Fink
  orcid: 0000-0001-8112-028X
citation:
  ama: Barzanjeh S, Wulf M, Peruzzo M, et al. Mechanical on chip microwave circulator.
    <i>Nature Communications</i>. 2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-01304-x">10.1038/s41467-017-01304-x</a>
  apa: Barzanjeh, S., Wulf, M., Peruzzo, M., Kalaee, M., Dieterle, P., Painter, O.,
    &#38; Fink, J. M. (2017). Mechanical on chip microwave circulator. <i>Nature Communications</i>.
    Nature Publishing Group. <a href="https://doi.org/10.1038/s41467-017-01304-x">https://doi.org/10.1038/s41467-017-01304-x</a>
  chicago: Barzanjeh, Shabir, Matthias Wulf, Matilda Peruzzo, Mahmoud Kalaee, Paul
    Dieterle, Oskar Painter, and Johannes M Fink. “Mechanical on Chip Microwave Circulator.”
    <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-01304-x">https://doi.org/10.1038/s41467-017-01304-x</a>.
  ieee: S. Barzanjeh <i>et al.</i>, “Mechanical on chip microwave circulator,” <i>Nature
    Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Barzanjeh S, Wulf M, Peruzzo M, Kalaee M, Dieterle P, Painter O, Fink JM.
    2017. Mechanical on chip microwave circulator. Nature Communications. 8(1), 1304.
  mla: Barzanjeh, Shabir, et al. “Mechanical on Chip Microwave Circulator.” <i>Nature
    Communications</i>, vol. 8, no. 1, 1304, Nature Publishing Group, 2017, doi:<a
    href="https://doi.org/10.1038/s41467-017-01304-x">10.1038/s41467-017-01304-x</a>.
  short: S. Barzanjeh, M. Wulf, M. Peruzzo, M. Kalaee, P. Dieterle, O. Painter, J.M.
    Fink, Nature Communications 8 (2017).
date_created: 2018-12-11T11:48:33Z
date_published: 2017-10-16T00:00:00Z
date_updated: 2023-09-27T12:11:28Z
day: '16'
ddc:
- '539'
department:
- _id: JoFi
doi: 10.1038/s41467-017-01304-x
ec_funded: 1
external_id:
  isi:
  - '000412999700021'
file:
- access_level: open_access
  checksum: b68dafa71d1834c23b742cd9987a3d5f
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:25Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '5145'
  file_name: IST-2017-867-v1+1_s41467-017-01304-x.pdf
  file_size: 1467696
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 257EB838-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '732894'
  name: Hybrid Optomechanical Technologies
- _id: 258047B6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '707438'
  name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
    with cavity Optomechanics'
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6855'
pubrep_id: '867'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Mechanical on chip microwave circulator
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
---
_id: '799'
abstract:
- lang: eng
  text: Membrane traffic at the trans-Golgi network (TGN) is crucial for correctly
    distributing various membrane proteins to their destination. Polarly localized
    auxin efflux proteins, including PIN-FORMED1 (PIN1), are dynamically transported
    between the endosomes and the plasma membrane (PM) in the plant cells. The intracellular
    trafficking of PIN1 protein is sensitive to a fungal toxin brefeldin A (BFA),
    which is known to inhibit guanine-nucleotide exchange factors for ADP ribosylation
    factors (ARF GEFs) such as GNOM. However, the molecular details of the BFA-sensitive
    trafficking pathway have not been revealed fully. In a previous study, we have
    identified an Arabidopsis mutant BFA-visualized endocytic trafficking defective
    3 (ben3) which exhibited reduced sensitivity to BFA in terms of BFA-induced intracellular
    PIN1 agglomeration. Here, we show that BEN3 encodes a member of BIG family ARF
    GEFs, BIG2. Fluorescent proteins tagged BEN3/BIG2 co-localized with markers for
    TGN / early endosome (EE). Inspection of conditionally induced de novo synthesized
    PIN1 confirmed that its secretion to the PM is BFA-sensitive and established BEN3/BIG2
    as a crucial component of this BFA action at the level of TGN/EE. Furthermore,
    ben3 mutation alleviated BFA-induced agglomeration of another TGN-localized ARF
    GEF BEN1/MIN7. Taken together our results suggest that BEN3/BIG2 is an ARF GEF
    component, which confers BFA sensitivity to the TGN/EE in Arabidopsis.
article_number: 1801-1811
article_processing_charge: No
author:
- first_name: Saeko
  full_name: Kitakura, Saeko
  last_name: Kitakura
- first_name: Maciek
  full_name: Adamowski, Maciek
  id: 45F536D2-F248-11E8-B48F-1D18A9856A87
  last_name: Adamowski
  orcid: 0000-0001-6463-5257
- first_name: Yuki
  full_name: Matsuura, Yuki
  last_name: Matsuura
- first_name: Luca
  full_name: Santuari, Luca
  last_name: Santuari
- first_name: Hirotaka
  full_name: Kouno, Hirotaka
  last_name: Kouno
- first_name: Kohei
  full_name: Arima, Kohei
  last_name: Arima
- first_name: Christian
  full_name: Hardtke, Christian
  last_name: Hardtke
- first_name: Jirí
  full_name: Friml, Jirí
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Tatsuo
  full_name: Kakimoto, Tatsuo
  last_name: Kakimoto
- first_name: Hirokazu
  full_name: Tanaka, Hirokazu
  last_name: Tanaka
citation:
  ama: Kitakura S, Adamowski M, Matsuura Y, et al. BEN3/BIG2 ARF GEF is involved in
    brefeldin a-sensitive trafficking at the trans-Golgi network/early endosome in
    Arabidopsis thaliana. <i>Plant and Cell Physiology</i>. 2017;58(10). doi:<a href="https://doi.org/10.1093/pcp/pcx118">10.1093/pcp/pcx118</a>
  apa: Kitakura, S., Adamowski, M., Matsuura, Y., Santuari, L., Kouno, H., Arima,
    K., … Tanaka, H. (2017). BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive
    trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana.
    <i>Plant and Cell Physiology</i>. Oxford University Press. <a href="https://doi.org/10.1093/pcp/pcx118">https://doi.org/10.1093/pcp/pcx118</a>
  chicago: Kitakura, Saeko, Maciek Adamowski, Yuki Matsuura, Luca Santuari, Hirotaka
    Kouno, Kohei Arima, Christian Hardtke, Jiří Friml, Tatsuo Kakimoto, and Hirokazu
    Tanaka. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive Trafficking at
    the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.” <i>Plant and
    Cell Physiology</i>. Oxford University Press, 2017. <a href="https://doi.org/10.1093/pcp/pcx118">https://doi.org/10.1093/pcp/pcx118</a>.
  ieee: S. Kitakura <i>et al.</i>, “BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive
    trafficking at the trans-Golgi network/early endosome in Arabidopsis thaliana,”
    <i>Plant and Cell Physiology</i>, vol. 58, no. 10. Oxford University Press, 2017.
  ista: Kitakura S, Adamowski M, Matsuura Y, Santuari L, Kouno H, Arima K, Hardtke
    C, Friml J, Kakimoto T, Tanaka H. 2017. BEN3/BIG2 ARF GEF is involved in brefeldin
    a-sensitive trafficking at the trans-Golgi network/early endosome in Arabidopsis
    thaliana. Plant and Cell Physiology. 58(10), 1801–1811.
  mla: Kitakura, Saeko, et al. “BEN3/BIG2 ARF GEF Is Involved in Brefeldin a-Sensitive
    Trafficking at the Trans-Golgi Network/Early Endosome in Arabidopsis Thaliana.”
    <i>Plant and Cell Physiology</i>, vol. 58, no. 10, 1801–1811, Oxford University
    Press, 2017, doi:<a href="https://doi.org/10.1093/pcp/pcx118">10.1093/pcp/pcx118</a>.
  short: S. Kitakura, M. Adamowski, Y. Matsuura, L. Santuari, H. Kouno, K. Arima,
    C. Hardtke, J. Friml, T. Kakimoto, H. Tanaka, Plant and Cell Physiology 58 (2017).
date_created: 2018-12-11T11:48:34Z
date_published: 2017-08-21T00:00:00Z
date_updated: 2023-09-27T11:00:19Z
day: '21'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1093/pcp/pcx118
external_id:
  isi:
  - '000413220400019'
  pmid:
  - '29016942'
file:
- access_level: open_access
  checksum: bd3e3a94d55416739cbb19624bb977f8
  content_type: application/pdf
  creator: dernst
  date_created: 2019-04-17T07:52:34Z
  date_updated: 2020-07-14T12:48:06Z
  file_id: '6333'
  file_name: 2017_PlantCellPhysio_Kitakura.pdf
  file_size: 1352913
  relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: '        58'
isi: 1
issue: '10'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant and Cell Physiology
publication_identifier:
  issn:
  - '00320781'
publication_status: published
publisher: Oxford University Press
publist_id: '6854'
pubrep_id: '1009'
quality_controlled: '1'
scopus_import: '1'
status: public
title: BEN3/BIG2 ARF GEF is involved in brefeldin a-sensitive trafficking at the trans-Golgi
  network/early endosome in Arabidopsis thaliana
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 58
year: '2017'
...
---
_id: '800'
abstract:
- lang: eng
  text: Gamma oscillations (30–150 Hz) in neuronal networks are associated with the
    processing and recall of information. We measured local field potentials in the
    dentate gyrus of freely moving mice and found that gamma activity occurs in bursts,
    which are highly heterogeneous in their spatial extensions, ranging from focal
    to global coherent events. Synaptic communication among perisomatic-inhibitory
    interneurons (PIIs) is thought to play an important role in the generation of
    hippocampal gamma patterns. However, how neuronal circuits can generate synchronous
    oscillations at different spatial scales is unknown. We analyzed paired recordings
    in dentate gyrus slices and show that synaptic signaling at interneuron-interneuron
    synapses is distance dependent. Synaptic strength declines whereas the duration
    of inhibitory signals increases with axonal distance among interconnected PIIs.
    Using neuronal network modeling, we show that distance-dependent inhibition generates
    multiple highly synchronous focal gamma bursts allowing the network to process
    complex inputs in parallel in flexibly organized neuronal centers.
article_number: '758'
article_processing_charge: No
author:
- first_name: Michael
  full_name: Strüber, Michael
  last_name: Strüber
- first_name: Jonas
  full_name: Sauer, Jonas
  last_name: Sauer
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
- first_name: Marlene
  full_name: Bartos, Marlene
  last_name: Bartos
citation:
  ama: Strüber M, Sauer J, Jonas PM, Bartos M. Distance-dependent inhibition facilitates
    focality of gamma oscillations in the dentate gyrus. <i>Nature Communications</i>.
    2017;8(1). doi:<a href="https://doi.org/10.1038/s41467-017-00936-3">10.1038/s41467-017-00936-3</a>
  apa: Strüber, M., Sauer, J., Jonas, P. M., &#38; Bartos, M. (2017). Distance-dependent
    inhibition facilitates focality of gamma oscillations in the dentate gyrus. <i>Nature
    Communications</i>. Nature Publishing Group. <a href="https://doi.org/10.1038/s41467-017-00936-3">https://doi.org/10.1038/s41467-017-00936-3</a>
  chicago: Strüber, Michael, Jonas Sauer, Peter M Jonas, and Marlene Bartos. “Distance-Dependent
    Inhibition Facilitates Focality of Gamma Oscillations in the Dentate Gyrus.” <i>Nature
    Communications</i>. Nature Publishing Group, 2017. <a href="https://doi.org/10.1038/s41467-017-00936-3">https://doi.org/10.1038/s41467-017-00936-3</a>.
  ieee: M. Strüber, J. Sauer, P. M. Jonas, and M. Bartos, “Distance-dependent inhibition
    facilitates focality of gamma oscillations in the dentate gyrus,” <i>Nature Communications</i>,
    vol. 8, no. 1. Nature Publishing Group, 2017.
  ista: Strüber M, Sauer J, Jonas PM, Bartos M. 2017. Distance-dependent inhibition
    facilitates focality of gamma oscillations in the dentate gyrus. Nature Communications.
    8(1), 758.
  mla: Strüber, Michael, et al. “Distance-Dependent Inhibition Facilitates Focality
    of Gamma Oscillations in the Dentate Gyrus.” <i>Nature Communications</i>, vol.
    8, no. 1, 758, Nature Publishing Group, 2017, doi:<a href="https://doi.org/10.1038/s41467-017-00936-3">10.1038/s41467-017-00936-3</a>.
  short: M. Strüber, J. Sauer, P.M. Jonas, M. Bartos, Nature Communications 8 (2017).
date_created: 2018-12-11T11:48:34Z
date_published: 2017-10-02T00:00:00Z
date_updated: 2023-09-27T10:59:41Z
day: '02'
ddc:
- '571'
department:
- _id: PeJo
doi: 10.1038/s41467-017-00936-3
ec_funded: 1
external_id:
  isi:
  - '000412053100004'
file:
- access_level: open_access
  checksum: 7e2c7621afd5f802338e92e8619f024d
  content_type: application/pdf
  creator: system
  date_created: 2018-12-12T10:15:17Z
  date_updated: 2020-07-14T12:48:07Z
  file_id: '5135'
  file_name: IST-2017-914-v1+1_s41467-017-00936-3.pdf
  file_size: 4261832
  relation: main_file
file_date_updated: 2020-07-14T12:48:07Z
has_accepted_license: '1'
intvolume: '         8'
isi: 1
issue: '1'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '268548'
  name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
publication: Nature Communications
publication_identifier:
  issn:
  - '20411723'
publication_status: published
publisher: Nature Publishing Group
publist_id: '6853'
pubrep_id: '914'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distance-dependent inhibition facilitates focality of gamma oscillations in
  the dentate gyrus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2017'
...
---
_id: '803'
abstract:
- lang: eng
  text: Eukaryotic cells store their chromosomes in a single nucleus. This is important
    to maintain genomic integrity, as chromosomes packaged into separate nuclei (micronuclei)
    are prone to massive DNA damage. During mitosis, higher eukaryotes disassemble
    their nucleus and release individualized chromosomes for segregation. How numerous
    chromosomes subsequently reform a single nucleus has remained unclear. Using image-based
    screening of human cells, we identified barrier-to-autointegration factor (BAF)
    as a key factor guiding membranes to form a single nucleus. Unexpectedly, nuclear
    assembly does not require BAF?s association with inner nuclear membrane proteins
    but instead relies on BAF?s ability to bridge distant DNA sites. Live-cell imaging
    and in vitro reconstitution showed that BAF enriches around the mitotic chromosome
    ensemble to induce a densely cross-bridged chromatin layer that is mechanically
    stiff and limits membranes to the surface. Our study reveals that BAF-mediated
    changes in chromosome mechanics underlie nuclear assembly with broad implications
    for proper genome function.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
author:
- first_name: Matthias
  full_name: Samwer, Matthias
  last_name: Samwer
- first_name: Maximilian
  full_name: Schneider, Maximilian
  last_name: Schneider
- first_name: Rudolf
  full_name: Hoefler, Rudolf
  last_name: Hoefler
- first_name: Philipp S
  full_name: Schmalhorst, Philipp S
  id: 309D50DA-F248-11E8-B48F-1D18A9856A87
  last_name: Schmalhorst
  orcid: 0000-0002-5795-0133
- first_name: Julian
  full_name: Jude, Julian
  last_name: Jude
- first_name: Johannes
  full_name: Zuber, Johannes
  last_name: Zuber
- first_name: Daniel
  full_name: Gerlic, Daniel
  last_name: Gerlic
citation:
  ama: Samwer M, Schneider M, Hoefler R, et al. DNA cross-bridging shapes a single
    nucleus from a set of mitotic chromosomes. <i>Cell</i>. 2017;170(5):956-972. doi:<a
    href="https://doi.org/10.1016/j.cell.2017.07.038">10.1016/j.cell.2017.07.038</a>
  apa: Samwer, M., Schneider, M., Hoefler, R., Schmalhorst, P. S., Jude, J., Zuber,
    J., &#38; Gerlic, D. (2017). DNA cross-bridging shapes a single nucleus from a
    set of mitotic chromosomes. <i>Cell</i>. Cell Press. <a href="https://doi.org/10.1016/j.cell.2017.07.038">https://doi.org/10.1016/j.cell.2017.07.038</a>
  chicago: Samwer, Matthias, Maximilian Schneider, Rudolf Hoefler, Philipp S Schmalhorst,
    Julian Jude, Johannes Zuber, and Daniel Gerlic. “DNA Cross-Bridging Shapes a Single
    Nucleus from a Set of Mitotic Chromosomes.” <i>Cell</i>. Cell Press, 2017. <a
    href="https://doi.org/10.1016/j.cell.2017.07.038">https://doi.org/10.1016/j.cell.2017.07.038</a>.
  ieee: M. Samwer <i>et al.</i>, “DNA cross-bridging shapes a single nucleus from
    a set of mitotic chromosomes,” <i>Cell</i>, vol. 170, no. 5. Cell Press, pp. 956–972,
    2017.
  ista: Samwer M, Schneider M, Hoefler R, Schmalhorst PS, Jude J, Zuber J, Gerlic
    D. 2017. DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes.
    Cell. 170(5), 956–972.
  mla: Samwer, Matthias, et al. “DNA Cross-Bridging Shapes a Single Nucleus from a
    Set of Mitotic Chromosomes.” <i>Cell</i>, vol. 170, no. 5, Cell Press, 2017, pp.
    956–72, doi:<a href="https://doi.org/10.1016/j.cell.2017.07.038">10.1016/j.cell.2017.07.038</a>.
  short: M. Samwer, M. Schneider, R. Hoefler, P.S. Schmalhorst, J. Jude, J. Zuber,
    D. Gerlic, Cell 170 (2017) 956–972.
date_created: 2018-12-11T11:48:35Z
date_published: 2017-08-24T00:00:00Z
date_updated: 2023-09-27T10:59:14Z
day: '24'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.1016/j.cell.2017.07.038
external_id:
  isi:
  - '000408372400014'
file:
- access_level: open_access
  checksum: 64897b0c5373f22273f598e4672c60ff
  content_type: application/pdf
  creator: dernst
  date_created: 2019-01-18T13:45:40Z
  date_updated: 2020-07-14T12:48:08Z
  file_id: '5852'
  file_name: 2017_Cell_Samwer.pdf
  file_size: 17666637
  relation: main_file
file_date_updated: 2020-07-14T12:48:08Z
has_accepted_license: '1'
intvolume: '       170'
isi: 1
issue: '5'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 956 - 972
publication: Cell
publication_identifier:
  issn:
  - '00928674'
publication_status: published
publisher: Cell Press
publist_id: '6848'
quality_controlled: '1'
scopus_import: '1'
status: public
title: DNA cross-bridging shapes a single nucleus from a set of mitotic chromosomes
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 170
year: '2017'
...
