---
_id: '317'
abstract:
- lang: eng
text: We replace the established aluminium gates for the formation of quantum dots
in silicon with gates made from palladium. We study the morphology of both aluminium
and palladium gates with transmission electron microscopy. The native aluminium
oxide is found to be formed all around the aluminium gates, which could lead to
the formation of unintentional dots. Therefore, we report on a novel fabrication
route that replaces aluminium and its native oxide by palladium with atomic-layer-deposition-grown
aluminium oxide. Using this approach, we show the formation of low-disorder gate-defined
quantum dots, which are reproducibly fabricated. Furthermore, palladium enables
us to further shrink the gate design, allowing us to perform electron transport
measurements in the few-electron regime in devices comprising only two gate layers,
a major technological advancement. It remains to be seen, whether the introduction
of palladium gates can improve the excellent results on electron and nuclear spin
qubits defined with an aluminium gate stack.
article_number: '5690'
article_processing_charge: No
author:
- first_name: Matthias
full_name: Brauns, Matthias
id: 33F94E3C-F248-11E8-B48F-1D18A9856A87
last_name: Brauns
- first_name: Sergey
full_name: Amitonov, Sergey
last_name: Amitonov
- first_name: Paul
full_name: Spruijtenburg, Paul
last_name: Spruijtenburg
- first_name: Floris
full_name: Zwanenburg, Floris
last_name: Zwanenburg
citation:
ama: Brauns M, Amitonov S, Spruijtenburg P, Zwanenburg F. Palladium gates for reproducible
quantum dots in silicon. Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-24004-y
apa: Brauns, M., Amitonov, S., Spruijtenburg, P., & Zwanenburg, F. (2018). Palladium
gates for reproducible quantum dots in silicon. Scientific Reports. Nature
Publishing Group. https://doi.org/10.1038/s41598-018-24004-y
chicago: Brauns, Matthias, Sergey Amitonov, Paul Spruijtenburg, and Floris Zwanenburg.
“Palladium Gates for Reproducible Quantum Dots in Silicon.” Scientific Reports.
Nature Publishing Group, 2018. https://doi.org/10.1038/s41598-018-24004-y.
ieee: M. Brauns, S. Amitonov, P. Spruijtenburg, and F. Zwanenburg, “Palladium gates
for reproducible quantum dots in silicon,” Scientific Reports, vol. 8,
no. 1. Nature Publishing Group, 2018.
ista: Brauns M, Amitonov S, Spruijtenburg P, Zwanenburg F. 2018. Palladium gates
for reproducible quantum dots in silicon. Scientific Reports. 8(1), 5690.
mla: Brauns, Matthias, et al. “Palladium Gates for Reproducible Quantum Dots in
Silicon.” Scientific Reports, vol. 8, no. 1, 5690, Nature Publishing Group,
2018, doi:10.1038/s41598-018-24004-y.
short: M. Brauns, S. Amitonov, P. Spruijtenburg, F. Zwanenburg, Scientific Reports
8 (2018).
date_created: 2018-12-11T11:45:47Z
date_published: 2018-04-09T00:00:00Z
date_updated: 2023-09-13T09:38:00Z
day: '09'
ddc:
- '539'
department:
- _id: GeKa
doi: 10.1038/s41598-018-24004-y
external_id:
isi:
- '000429404300013'
file:
- access_level: open_access
checksum: 20af238ca4ba6491b77270be8d826bf5
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:17:04Z
date_updated: 2020-07-14T12:46:02Z
file_id: '5256'
file_name: IST-2018-1016-v1+1_2018_Brauns_Palladium_gates.pdf
file_size: 1850530
relation: main_file
file_date_updated: 2020-07-14T12:46:02Z
has_accepted_license: '1'
intvolume: ' 8'
isi: 1
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '7548'
pubrep_id: '1016'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Palladium gates for reproducible quantum dots in silicon
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2018'
...
---
_id: '318'
abstract:
- lang: eng
text: The insect’s fat body combines metabolic and immunological functions. In this
issue of Developmental Cell, Franz et al. (2018) show that in Drosophila, cells
of the fat body are not static, but can actively “swim” toward sites of epithelial
injury, where they physically clog the wound and locally secrete antimicrobial
peptides.
acknowledgement: Short Survey
article_processing_charge: No
author:
- first_name: Alessandra M
full_name: Casano, Alessandra M
id: 3DBA3F4E-F248-11E8-B48F-1D18A9856A87
last_name: Casano
orcid: 0000-0002-6009-6804
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Casano AM, Sixt MK. A fat lot of good for wound healing. Developmental Cell.
2018;44(4):405-406. doi:10.1016/j.devcel.2018.02.009
apa: Casano, A. M., & Sixt, M. K. (2018). A fat lot of good for wound healing.
Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2018.02.009
chicago: Casano, Alessandra M, and Michael K Sixt. “A Fat Lot of Good for Wound
Healing.” Developmental Cell. Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.02.009.
ieee: A. M. Casano and M. K. Sixt, “A fat lot of good for wound healing,” Developmental
Cell, vol. 44, no. 4. Cell Press, pp. 405–406, 2018.
ista: Casano AM, Sixt MK. 2018. A fat lot of good for wound healing. Developmental
Cell. 44(4), 405–406.
mla: Casano, Alessandra M., and Michael K. Sixt. “A Fat Lot of Good for Wound Healing.”
Developmental Cell, vol. 44, no. 4, Cell Press, 2018, pp. 405–06, doi:10.1016/j.devcel.2018.02.009.
short: A.M. Casano, M.K. Sixt, Developmental Cell 44 (2018) 405–406.
date_created: 2018-12-11T11:45:47Z
date_published: 2018-02-26T00:00:00Z
date_updated: 2023-09-08T11:42:28Z
day: '26'
department:
- _id: MiSi
doi: 10.1016/j.devcel.2018.02.009
external_id:
isi:
- '000426150700002'
pmid:
- '29486189'
intvolume: ' 44'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/29486189
month: '02'
oa: 1
oa_version: Published Version
page: 405 - 406
pmid: 1
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '7547'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A fat lot of good for wound healing
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 44
year: '2018'
...
---
_id: '32'
abstract:
- lang: eng
text: The functional role of AMPA receptor (AMPAR)-mediated synaptic signaling between
neurons and oligodendrocyte precursor cells (OPCs) remains enigmatic. We modified
the properties of AMPARs at axon-OPC synapses in the mouse corpus callosum in
vivo during the peak of myelination by targeting the GluA2 subunit. Expression
of the unedited (Ca2+ permeable) or the pore-dead GluA2 subunit of AMPARs triggered
proliferation of OPCs and reduced their differentiation into oligodendrocytes.
Expression of the cytoplasmic C-terminal (GluA2(813-862)) of the GluA2 subunit
(C-tail), a modification designed to affect the interaction between GluA2 and
AMPAR-binding proteins and to perturb trafficking of GluA2-containing AMPARs,
decreased the differentiation of OPCs without affecting their proliferation. These
findings suggest that ionotropic and non-ionotropic properties of AMPARs in OPCs,
as well as specific aspects of AMPAR-mediated signaling at axon-OPC synapses in
the mouse corpus callosum, are important for balancing the response of OPCs to
proliferation and differentiation cues. In the brain, oligodendrocyte precursor
cells (OPCs) receive glutamatergic AMPA-receptor-mediated synaptic input from
neurons. Chen et al. show that modifying AMPA-receptor properties at axon-OPC
synapses alters proliferation and differentiation of OPCs. This expands the traditional
view of synaptic transmission by suggesting neurons also use synapses to modulate
behavior of glia.
acknowledgement: This work was supported by Deutsche Forschungsgemeinschaft (DFG)
grant KU2569/1-1 (to M.K.); DFG project EXC307Centre for Integrative Neuroscience
(CIN), including grant Pool Project 2011-12 (jointly to M.K. and I.E.); and the
Charitable Hertie Foundation (to I.E.). CIN is an Excellence Cluster funded by the
DFG within the framework of the Excellence Initiative for 2008–2018. M.K. is supported
by the Tistou & Charlotte Kerstan Foundation.
article_processing_charge: No
author:
- first_name: Ting
full_name: Chen, Ting
last_name: Chen
- first_name: Bartosz
full_name: Kula, Bartosz
last_name: Kula
- first_name: Balint
full_name: Nagy, Balint
id: 30F830CE-02D1-11E9-9BAA-DAF4881429F2
last_name: Nagy
orcid: 0000-0002-4002-4686
- first_name: Ruxandra
full_name: Barzan, Ruxandra
last_name: Barzan
- first_name: Andrea
full_name: Gall, Andrea
last_name: Gall
- first_name: Ingrid
full_name: Ehrlich, Ingrid
last_name: Ehrlich
- first_name: Maria
full_name: Kukley, Maria
last_name: Kukley
citation:
ama: Chen T, Kula B, Nagy B, et al. In Vivo regulation of Oligodendrocyte processor
cell proliferation and differentiation by the AMPA-receptor Subunit GluA2. Cell
Reports. 2018;25(4):852-861.e7. doi:10.1016/j.celrep.2018.09.066
apa: Chen, T., Kula, B., Nagy, B., Barzan, R., Gall, A., Ehrlich, I., & Kukley,
M. (2018). In Vivo regulation of Oligodendrocyte processor cell proliferation
and differentiation by the AMPA-receptor Subunit GluA2. Cell Reports. Elsevier.
https://doi.org/10.1016/j.celrep.2018.09.066
chicago: Chen, Ting, Bartosz Kula, Balint Nagy, Ruxandra Barzan, Andrea Gall, Ingrid
Ehrlich, and Maria Kukley. “In Vivo Regulation of Oligodendrocyte Processor Cell
Proliferation and Differentiation by the AMPA-Receptor Subunit GluA2.” Cell
Reports. Elsevier, 2018. https://doi.org/10.1016/j.celrep.2018.09.066.
ieee: T. Chen et al., “In Vivo regulation of Oligodendrocyte processor cell
proliferation and differentiation by the AMPA-receptor Subunit GluA2,” Cell
Reports, vol. 25, no. 4. Elsevier, p. 852–861.e7, 2018.
ista: Chen T, Kula B, Nagy B, Barzan R, Gall A, Ehrlich I, Kukley M. 2018. In Vivo
regulation of Oligodendrocyte processor cell proliferation and differentiation
by the AMPA-receptor Subunit GluA2. Cell Reports. 25(4), 852–861.e7.
mla: Chen, Ting, et al. “In Vivo Regulation of Oligodendrocyte Processor Cell Proliferation
and Differentiation by the AMPA-Receptor Subunit GluA2.” Cell Reports,
vol. 25, no. 4, Elsevier, 2018, p. 852–861.e7, doi:10.1016/j.celrep.2018.09.066.
short: T. Chen, B. Kula, B. Nagy, R. Barzan, A. Gall, I. Ehrlich, M. Kukley, Cell
Reports 25 (2018) 852–861.e7.
date_created: 2018-12-11T11:44:16Z
date_published: 2018-10-23T00:00:00Z
date_updated: 2023-09-11T14:13:32Z
day: '23'
ddc:
- '570'
department:
- _id: SaSi
doi: 10.1016/j.celrep.2018.09.066
external_id:
isi:
- '000448219500005'
file:
- access_level: open_access
checksum: d9f74277fd57176e04732707d575cf08
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T12:42:57Z
date_updated: 2020-07-14T12:46:03Z
file_id: '5703'
file_name: 2018_CellReports_Chen.pdf
file_size: 4461997
relation: main_file
file_date_updated: 2020-07-14T12:46:03Z
has_accepted_license: '1'
intvolume: ' 25'
isi: 1
issue: '4'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 852 - 861.e7
publication: Cell Reports
publication_status: published
publisher: Elsevier
publist_id: '8023'
quality_controlled: '1'
scopus_import: '1'
status: public
title: In Vivo regulation of Oligodendrocyte processor cell proliferation and differentiation
by the AMPA-receptor Subunit GluA2
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 25
year: '2018'
...
---
_id: '320'
abstract:
- lang: eng
text: 'Fast-spiking, parvalbumin-expressing GABAergic interneurons (PV+-BCs) express
a complex machinery of rapid signaling mechanisms, including specialized voltage-gated
ion channels to generate brief action potentials (APs). However, short APs are
associated with overlapping Na+ and K+ fluxes and are therefore energetically
expensive. How the potentially vicious combination of high AP frequency and inefficient
spike generation can be reconciled with limited energy supply is presently unclear.
To address this question, we performed direct recordings from the PV+-BC axon,
the subcellular structure where active conductances for AP initiation and propagation
are located. Surprisingly, the energy required for the AP was, on average, only
∼1.6 times the theoretical minimum. High energy efficiency emerged from the combination
of fast inactivation of Na+ channels and delayed activation of Kv3-type K+ channels,
which minimized ion flux overlap during APs. Thus, the complementary tuning of
axonal Na+ and K+ channel gating optimizes both fast signaling properties and
metabolic efficiency. Hu et al. demonstrate that action potentials in parvalbumin-expressing
GABAergic interneuron axons are energetically efficient, which is highly unexpected
given their brief duration. High energy efficiency emerges from the combination
of fast inactivation of voltage-gated Na+ channels and delayed activation of Kv3
channels in the axon. '
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Hua
full_name: Hu, Hua
id: 4AC0145C-F248-11E8-B48F-1D18A9856A87
last_name: Hu
- first_name: Fabian
full_name: Roth, Fabian
last_name: Roth
- first_name: David H
full_name: Vandael, David H
id: 3AE48E0A-F248-11E8-B48F-1D18A9856A87
last_name: Vandael
orcid: 0000-0001-7577-1676
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Hu H, Roth F, Vandael DH, Jonas PM. Complementary tuning of Na+ and K+ channel
gating underlies fast and energy-efficient action potentials in GABAergic interneuron
axons. Neuron. 2018;98(1):156-165. doi:10.1016/j.neuron.2018.02.024
apa: Hu, H., Roth, F., Vandael, D. H., & Jonas, P. M. (2018). Complementary
tuning of Na+ and K+ channel gating underlies fast and energy-efficient action
potentials in GABAergic interneuron axons. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2018.02.024
chicago: Hu, Hua, Fabian Roth, David H Vandael, and Peter M Jonas. “Complementary
Tuning of Na+ and K+ Channel Gating Underlies Fast and Energy-Efficient Action
Potentials in GABAergic Interneuron Axons.” Neuron. Elsevier, 2018. https://doi.org/10.1016/j.neuron.2018.02.024.
ieee: H. Hu, F. Roth, D. H. Vandael, and P. M. Jonas, “Complementary tuning of Na+
and K+ channel gating underlies fast and energy-efficient action potentials in
GABAergic interneuron axons,” Neuron, vol. 98, no. 1. Elsevier, pp. 156–165,
2018.
ista: Hu H, Roth F, Vandael DH, Jonas PM. 2018. Complementary tuning of Na+ and
K+ channel gating underlies fast and energy-efficient action potentials in GABAergic
interneuron axons. Neuron. 98(1), 156–165.
mla: Hu, Hua, et al. “Complementary Tuning of Na+ and K+ Channel Gating Underlies
Fast and Energy-Efficient Action Potentials in GABAergic Interneuron Axons.” Neuron,
vol. 98, no. 1, Elsevier, 2018, pp. 156–65, doi:10.1016/j.neuron.2018.02.024.
short: H. Hu, F. Roth, D.H. Vandael, P.M. Jonas, Neuron 98 (2018) 156–165.
date_created: 2018-12-11T11:45:48Z
date_published: 2018-04-04T00:00:00Z
date_updated: 2023-09-11T12:45:10Z
day: '04'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1016/j.neuron.2018.02.024
ec_funded: 1
external_id:
isi:
- '000429192100016'
file:
- access_level: open_access
checksum: 76070f3729f9c603e1080d0151aa2b11
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:37:50Z
date_updated: 2020-07-14T12:46:03Z
file_id: '5690'
file_name: 2018_Neuron_Hu.pdf
file_size: 3180444
relation: main_file
file_date_updated: 2020-07-14T12:46:03Z
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intvolume: ' 98'
isi: 1
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 156 - 165
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '268548'
name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '692692'
name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P24909-B24
name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00312
name: The Wittgenstein Prize
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '7545'
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/a-certain-type-of-neurons-is-more-energy-efficient-than-previously-assumed/
scopus_import: '1'
status: public
title: Complementary tuning of Na+ and K+ channel gating underlies fast and energy-efficient
action potentials in GABAergic interneuron axons
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '321'
abstract:
- lang: eng
text: The twelve papers in this special section focus on learning systems with shared
information for computer vision and multimedia communication analysis. In the
real world, a realistic setting for computer vision or multimedia recognition
problems is that we have some classes containing lots of training data and many
classes containing a small amount of training data. Therefore, how to use frequent
classes to help learning rare classes for which it is harder to collect the training
data is an open question. Learning with shared information is an emerging topic
in machine learning, computer vision and multimedia analysis. There are different
levels of components that can be shared during concept modeling and machine learning
stages, such as sharing generic object parts, sharing attributes, sharing transformations,
sharing regularization parameters and sharing training examples, etc. Regarding
the specific methods, multi-task learning, transfer learning and deep learning
can be seen as using different strategies to share information. These learning
with shared information methods are very effective in solving real-world large-scale
problems.
article_processing_charge: No
article_type: original
author:
- first_name: Trevor
full_name: Darrell, Trevor
last_name: Darrell
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
- first_name: Nico
full_name: Sebe, Nico
last_name: Sebe
- first_name: Ying
full_name: Wu, Ying
last_name: Wu
- first_name: Yan
full_name: Yan, Yan
last_name: Yan
citation:
ama: Darrell T, Lampert C, Sebe N, Wu Y, Yan Y. Guest editors’ introduction to the
special section on learning with Shared information for computer vision and multimedia
analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence.
2018;40(5):1029-1031. doi:10.1109/TPAMI.2018.2804998
apa: Darrell, T., Lampert, C., Sebe, N., Wu, Y., & Yan, Y. (2018). Guest editors’
introduction to the special section on learning with Shared information for computer
vision and multimedia analysis. IEEE Transactions on Pattern Analysis and Machine
Intelligence. IEEE. https://doi.org/10.1109/TPAMI.2018.2804998
chicago: Darrell, Trevor, Christoph Lampert, Nico Sebe, Ying Wu, and Yan Yan. “Guest
Editors’ Introduction to the Special Section on Learning with Shared Information
for Computer Vision and Multimedia Analysis.” IEEE Transactions on Pattern
Analysis and Machine Intelligence. IEEE, 2018. https://doi.org/10.1109/TPAMI.2018.2804998.
ieee: T. Darrell, C. Lampert, N. Sebe, Y. Wu, and Y. Yan, “Guest editors’ introduction
to the special section on learning with Shared information for computer vision
and multimedia analysis,” IEEE Transactions on Pattern Analysis and Machine
Intelligence, vol. 40, no. 5. IEEE, pp. 1029–1031, 2018.
ista: Darrell T, Lampert C, Sebe N, Wu Y, Yan Y. 2018. Guest editors’ introduction
to the special section on learning with Shared information for computer vision
and multimedia analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence.
40(5), 1029–1031.
mla: Darrell, Trevor, et al. “Guest Editors’ Introduction to the Special Section
on Learning with Shared Information for Computer Vision and Multimedia Analysis.”
IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 40,
no. 5, IEEE, 2018, pp. 1029–31, doi:10.1109/TPAMI.2018.2804998.
short: T. Darrell, C. Lampert, N. Sebe, Y. Wu, Y. Yan, IEEE Transactions on Pattern
Analysis and Machine Intelligence 40 (2018) 1029–1031.
date_created: 2018-12-11T11:45:48Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-09-11T14:07:54Z
day: '01'
ddc:
- '000'
department:
- _id: ChLa
doi: 10.1109/TPAMI.2018.2804998
external_id:
isi:
- '000428901200001'
file:
- access_level: open_access
checksum: b19c75da06faf3291a3ca47dfa50ef63
content_type: application/pdf
creator: dernst
date_created: 2020-05-14T12:50:48Z
date_updated: 2020-07-14T12:46:03Z
file_id: '7835'
file_name: 2018_IEEE_Darrell.pdf
file_size: 141724
relation: main_file
file_date_updated: 2020-07-14T12:46:03Z
has_accepted_license: '1'
intvolume: ' 40'
isi: 1
issue: '5'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1029 - 1031
publication: IEEE Transactions on Pattern Analysis and Machine Intelligence
publication_status: published
publisher: IEEE
publist_id: '7544'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Guest editors' introduction to the special section on learning with Shared
information for computer vision and multimedia analysis
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 40
year: '2018'
...
---
_id: '322'
abstract:
- lang: eng
text: We construct quantizations of multiplicative hypertoric varieties using an
algebra of q-difference operators on affine space, where q is a root of unity
in C. The quantization defines a matrix bundle (i.e. Azumaya algebra) over the
multiplicative hypertoric variety and admits an explicit finite étale splitting.
The global sections of this Azumaya algebra is a hypertoric quantum group, and
we prove a localization theorem. We introduce a general framework of Frobenius
quantum moment maps and their Hamiltonian reductions; our results shed light on
an instance of this framework.
acknowledgement: "National Science Foundation: Graduate Research Fellowship and grant
No.0932078000; ERC Advanced Grant “Arithmetic and Physics of Higgs moduli spaces”
No. 320593 \r\nThe author is grateful to David Jordan for suggesting this project
and providing guidance throughout, particularly for the formulation of Frobenius
quantum moment maps and key ideas in the proofs of Theorems 3.12 and 4.8. Special
thanks to David Ben-Zvi (the author's PhD advisor) for numerous discussions and
constant encouragement, and for suggesting the term ‘hypertoric quantum group.’
Many results appearing in the current paper were proven independently by Nicholas
Cooney; the author is grateful to Nicholas for sharing his insight on various topics,
including Proposition 3.8. The author also thanks Nicholas Proudfoot for relating
the definition of multiplicative hypertoric varieties, as well as the content of
Remark 2.14. The author also benefited immensely from the close reading and detailed
comments of an anonymous referee, and from conversations with Justin Hilburn, Kobi
Kremnitzer, Michael McBreen, Tom Nevins, Travis Schedler, and Ben Webster. \r\n\r\n\r\n\r\n"
article_processing_charge: No
arxiv: 1
author:
- first_name: Iordan V
full_name: Ganev, Iordan V
id: 447491B8-F248-11E8-B48F-1D18A9856A87
last_name: Ganev
citation:
ama: Ganev IV. Quantizations of multiplicative hypertoric varieties at a root of
unity. Journal of Algebra. 2018;506:92-128. doi:10.1016/j.jalgebra.2018.03.015
apa: Ganev, I. V. (2018). Quantizations of multiplicative hypertoric varieties at
a root of unity. Journal of Algebra. World Scientific Publishing. https://doi.org/10.1016/j.jalgebra.2018.03.015
chicago: Ganev, Iordan V. “Quantizations of Multiplicative Hypertoric Varieties
at a Root of Unity.” Journal of Algebra. World Scientific Publishing, 2018.
https://doi.org/10.1016/j.jalgebra.2018.03.015.
ieee: I. V. Ganev, “Quantizations of multiplicative hypertoric varieties at a root
of unity,” Journal of Algebra, vol. 506. World Scientific Publishing, pp.
92–128, 2018.
ista: Ganev IV. 2018. Quantizations of multiplicative hypertoric varieties at a
root of unity. Journal of Algebra. 506, 92–128.
mla: Ganev, Iordan V. “Quantizations of Multiplicative Hypertoric Varieties at a
Root of Unity.” Journal of Algebra, vol. 506, World Scientific Publishing,
2018, pp. 92–128, doi:10.1016/j.jalgebra.2018.03.015.
short: I.V. Ganev, Journal of Algebra 506 (2018) 92–128.
date_created: 2018-12-11T11:45:49Z
date_published: 2018-07-15T00:00:00Z
date_updated: 2023-09-15T12:08:38Z
day: '15'
department:
- _id: TaHa
doi: 10.1016/j.jalgebra.2018.03.015
ec_funded: 1
external_id:
arxiv:
- '1412.7211'
isi:
- '000433270600005'
intvolume: ' 506'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1412.7211
month: '07'
oa: 1
oa_version: Preprint
page: 92 - 128
project:
- _id: 25E549F4-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '320593'
name: Arithmetic and physics of Higgs moduli spaces
publication: Journal of Algebra
publication_status: published
publisher: World Scientific Publishing
publist_id: '7543'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Quantizations of multiplicative hypertoric varieties at a root of unity
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 506
year: '2018'
...
---
_id: '323'
abstract:
- lang: eng
text: 'In the here presented thesis, we explore the role of branched actin networks
in cell migration and antigen presentation, the two most relevant processes in
dendritic cell biology. Branched actin networks construct lamellipodial protrusions
at the leading edge of migrating cells. These are typically seen as adhesive structures,
which mediate force transduction to the extracellular matrix that leads to forward
locomotion. We ablated Arp2/3 nucleation promoting factor WAVE in DCs and found
that the resulting cells lack lamellipodial protrusions. Instead, depending on
the maturation state, one or multiple filopodia were formed. By challenging these
cells in a variety of migration assays we found that lamellipodial protrusions
are dispensable for the locomotion of leukocytes and actually dampen the speed
of migration. However, lamellipodia are critically required to negotiate complex
environments that DCs experience while they travel to the next draining lymph
node. Taken together our results suggest that leukocyte lamellipodia have rather
a sensory- than a force transducing function. Furthermore, we show for the first
time structure and dynamics of dendritic cell F-actin at the immunological synapse
with naïve T cells. Dendritic cell F-actin appears as dynamic foci that are nucleated
by the Arp2/3 complex. WAVE ablated dendritic cells show increased membrane tension,
leading to an altered ultrastructure of the immunological synapse and severe T
cell priming defects. These results point towards a previously unappreciated role
of the cellular mechanics of dendritic cells in T cell activation. Additionally,
we present a novel cell culture based system for the differentiation of dendritic
cells from conditionally immortalized hematopoietic precursors. These precursor
cells are genetically tractable via the CRISPR/Cas9 system while they retain their
ability to differentiate into highly migratory dendritic cells and other immune
cells. This will foster the study of all aspects of dendritic cell biology and
beyond. '
acknowledged_ssus:
- _id: NanoFab
- _id: Bio
- _id: PreCl
- _id: EM-Fac
acknowledgement: "First of all I would like to thank Michael Sixt for giving me the
opportunity to work in \r\nhis group and for his support throughout the years. He
is a truly inspiring person and \r\nthe best boss one can imagine. I would
\ also like to thank all current and past \r\nmembers of the Sixt group for
their help and the great working atmosphere in the lab. \r\nIt is a true privilege
to work with such a bright, funny and friendly group of people and \r\nI’m proud
\ that I could be part of it. Furthermore, I would like to say ‘thank
\ you’ to Daria Siekhaus for all the meetings and discussion we had throughout
the years \r\nand to Federica Benvenuti for being part of my committee.
\ I am also grateful to Jack \r\nMerrin in the nanofabrication facility
\ and all the people working in the bioimaging-\r\n, the electron microscopy-
and the preclinical facilities."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Alexander F
full_name: Leithner, Alexander F
id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
last_name: Leithner
orcid: 0000-0002-1073-744X
citation:
ama: Leithner AF. Branched actin networks in dendritic cell biology. 2018. doi:10.15479/AT:ISTA:th_998
apa: Leithner, A. F. (2018). Branched actin networks in dendritic cell biology.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:th_998
chicago: Leithner, Alexander F. “Branched Actin Networks in Dendritic Cell Biology.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:th_998.
ieee: A. F. Leithner, “Branched actin networks in dendritic cell biology,” Institute
of Science and Technology Austria, 2018.
ista: Leithner AF. 2018. Branched actin networks in dendritic cell biology. Institute
of Science and Technology Austria.
mla: Leithner, Alexander F. Branched Actin Networks in Dendritic Cell Biology.
Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:th_998.
short: A.F. Leithner, Branched Actin Networks in Dendritic Cell Biology, Institute
of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:45:49Z
date_published: 2018-04-12T00:00:00Z
date_updated: 2023-09-07T12:39:44Z
day: '12'
ddc:
- '571'
- '599'
- '610'
degree_awarded: PhD
department:
- _id: MiSi
doi: 10.15479/AT:ISTA:th_998
file:
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date_created: 2019-04-05T09:23:11Z
date_updated: 2021-02-11T23:30:17Z
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file_name: PhD_thesis_AlexLeithner_final_version.docx
file_size: 29027671
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checksum: 071f7476db29e41146824ebd0697cb10
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date_created: 2019-04-05T09:23:11Z
date_updated: 2021-02-11T11:17:16Z
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file_size: 66045341
relation: main_file
file_date_updated: 2021-02-11T23:30:17Z
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language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: '99'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7542'
pubrep_id: '998'
related_material:
record:
- id: '1321'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
title: Branched actin networks in dendritic cell biology
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '324'
abstract:
- lang: eng
text: Neuronal networks in the brain consist of two main types of neuron, glutamatergic
principal neurons and GABAergic interneurons. Although these interneurons only
represent 10–20% of the whole population, they mediate feedback and feedforward
inhibition and are involved in the generation of high-frequency network oscillations.
A hallmark functional property of GABAergic interneurons, especially of the parvalbumin‑expressing
(PV+) subtypes, is the speed of signaling at their output synapse across species
and brain regions. Several molecular and subcellular factors may underlie the
submillisecond signaling at GABAergic synapses. Such as the selective use of P/Q
type Ca2+ channels and the tight coupling between Ca2+ channels and Ca2+ sensors
of exocytosis. However, whether the molecular identity of the release sensor contributes
to these signaling properties remains unclear. Besides, these interneurons are
mainly show depression in response to train of stimuli. How could they keep sufficient
release to control the activity of postsynaptic principal neurons during high
network activity, is largely elusive. For my Ph.D. work, we firstly examined the
Ca2+ sensor of exocytosis at the GABAergic basket cell (BC) to Purkinje cell (PC)
synapse in the cerebellum. Immunolabeling suggested that BC terminals selectively
expressed synaptotagmin 2 (Syt2), whereas synaptotagmin 1 (Syt1) was enriched
in excitatory terminals. Genetic elimination of Syt2 reduced action potential-evoked
release to ~10% compared to the wild-type control, identifying Syt2 as the major
Ca2+ sensor at BC‑PC synapses. Differential adenovirus-mediated rescue revealed
Syt2 triggered release with shorter latency and higher temporal precision, and
mediated faster vesicle pool replenishment than Syt1. Furthermore, deletion of
Syt2 severely reduced and delayed disynaptic inhibition following parallel fiber
stimulation. Thus, the selective use of Syt2 as the release sensor at BC–PC synapse
ensures fast feedforward inhibition in cerebellar microcircuits. Additionally,
we tested the function of another synaptotagmin member, Syt7, for inhibitory synaptic
transmission at the BC–PC synapse. Syt7 is thought to be a Ca2+ sensor that mediates
asynchronous transmitter release and facilitation at synapses. However, it is
strongly expressed in fast-spiking, PV+ GABAergic interneurons and the output
synapses of these neurons produce only minimal asynchronous release and show depression
rather than facilitation. How could Syt7, a facilitation sensor, contribute to
the depressed inhibitory synaptic transmission needs to be further investigated
and understood. Our results indicated that at the BC–PC synapse, Syt7 contributes
to asynchronous release, pool replenishment and facilitation. In combination,
these three effects ensure efficient transmitter release during high‑frequency
activity and guarantee frequency independence of inhibition. Taken together, our
results confirmed that Syt2, which has the fastest kinetic properties among all
synaptotagmin members, is mainly used by the inhibitory BC‑PC synapse for synaptic
transmission, contributing to the speed and temporal precision of transmitter
release. Furthermore, we showed that Syt7, another highly expressed synaptotagmin
member in the output synapses of cerebellar BCs, is used for ensuring efficient
inhibitor synaptic transmission during high activity.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Chong
full_name: Chen, Chong
id: 3DFD581A-F248-11E8-B48F-1D18A9856A87
last_name: Chen
citation:
ama: Chen C. Synaptotagmins ensure speed and efficiency of inhibitory neurotransmitter
release. 2018. doi:10.15479/AT:ISTA:th_997
apa: Chen, C. (2018). Synaptotagmins ensure speed and efficiency of inhibitory
neurotransmitter release. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:th_997
chicago: Chen, Chong. “Synaptotagmins Ensure Speed and Efficiency of Inhibitory
Neurotransmitter Release.” Institute of Science and Technology Austria, 2018.
https://doi.org/10.15479/AT:ISTA:th_997.
ieee: C. Chen, “Synaptotagmins ensure speed and efficiency of inhibitory neurotransmitter
release,” Institute of Science and Technology Austria, 2018.
ista: Chen C. 2018. Synaptotagmins ensure speed and efficiency of inhibitory neurotransmitter
release. Institute of Science and Technology Austria.
mla: Chen, Chong. Synaptotagmins Ensure Speed and Efficiency of Inhibitory Neurotransmitter
Release. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:th_997.
short: C. Chen, Synaptotagmins Ensure Speed and Efficiency of Inhibitory Neurotransmitter
Release, Institute of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:45:49Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-27T12:26:03Z
day: '01'
ddc:
- '571'
degree_awarded: PhD
department:
- _id: PeJo
doi: 10.15479/AT:ISTA:th_997
file:
- access_level: open_access
checksum: 8e163ae9e927401b9fa7c1b3e6a3631a
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:13:58Z
date_updated: 2020-07-14T12:46:04Z
file_id: '5046'
file_name: IST-2018-997-v1+1_Thesis_chong_a.pdf
file_size: 8719458
relation: main_file
- access_level: closed
checksum: f7d7260029a5fbb5c982db61328ade52
content_type: application/octet-stream
creator: dernst
date_created: 2019-04-05T09:25:26Z
date_updated: 2020-07-14T12:46:04Z
file_id: '6221'
file_name: 2018_Thesis_chong_source.pages
file_size: 47841940
relation: source_file
file_date_updated: 2020-07-14T12:46:04Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '110'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7541'
pubrep_id: '997'
related_material:
record:
- id: '1117'
relation: part_of_dissertation
status: public
- id: '749'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
title: Synaptotagmins ensure speed and efficiency of inhibitory neurotransmitter release
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '325'
abstract:
- lang: eng
text: Probabilistic programs extend classical imperative programs with real-valued
random variables and random branching. The most basic liveness property for such
programs is the termination property. The qualitative (aka almost-sure) termination
problem asks whether a given program program terminates with probability 1. While
ranking functions provide a sound and complete method for non-probabilistic programs,
the extension of them to probabilistic programs is achieved via ranking supermartingales
(RSMs). Although deep theoretical results have been established about RSMs, their
application to probabilistic programs with nondeterminism has been limited only
to programs of restricted control-flow structure. For non-probabilistic programs,
lexicographic ranking functions provide a compositional and practical approach
for termination analysis of real-world programs. In this work we introduce lexicographic
RSMs and show that they present a sound method for almost-sure termination of
probabilistic programs with nondeterminism. We show that lexicographic RSMs provide
a tool for compositional reasoning about almost-sure termination, and for probabilistic
programs with linear arithmetic they can be synthesized efficiently (in polynomial
time). We also show that with additional restrictions even asymptotic bounds on
expected termination time can be obtained through lexicographic RSMs. Finally,
we present experimental results on benchmarks adapted from previous work to demonstrate
the effectiveness of our approach.
article_number: '34'
arxiv: 1
author:
- first_name: Sheshansh
full_name: Agrawal, Sheshansh
last_name: Agrawal
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Petr
full_name: Novotny, Petr
id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
last_name: Novotny
citation:
ama: 'Agrawal S, Chatterjee K, Novotný P. Lexicographic ranking supermartingales:
an efficient approach to termination of probabilistic programs. In: Vol 2. ACM;
2018. doi:10.1145/3158122'
apa: 'Agrawal, S., Chatterjee, K., & Novotný, P. (2018). Lexicographic ranking
supermartingales: an efficient approach to termination of probabilistic programs
(Vol. 2). Presented at the POPL: Principles of Programming Languages, Los Angeles,
CA, USA: ACM. https://doi.org/10.1145/3158122'
chicago: 'Agrawal, Sheshansh, Krishnendu Chatterjee, and Petr Novotný. “Lexicographic
Ranking Supermartingales: An Efficient Approach to Termination of Probabilistic
Programs,” Vol. 2. ACM, 2018. https://doi.org/10.1145/3158122.'
ieee: 'S. Agrawal, K. Chatterjee, and P. Novotný, “Lexicographic ranking supermartingales:
an efficient approach to termination of probabilistic programs,” presented at
the POPL: Principles of Programming Languages, Los Angeles, CA, USA, 2018, vol.
2, no. POPL.'
ista: 'Agrawal S, Chatterjee K, Novotný P. 2018. Lexicographic ranking supermartingales:
an efficient approach to termination of probabilistic programs. POPL: Principles
of Programming Languages vol. 2, 34.'
mla: 'Agrawal, Sheshansh, et al. Lexicographic Ranking Supermartingales: An Efficient
Approach to Termination of Probabilistic Programs. Vol. 2, no. POPL, 34, ACM,
2018, doi:10.1145/3158122.'
short: S. Agrawal, K. Chatterjee, P. Novotný, in:, ACM, 2018.
conference:
end_date: 2018-01-13
location: Los Angeles, CA, USA
name: 'POPL: Principles of Programming Languages'
start_date: 2018-01-07
date_created: 2018-12-11T11:45:50Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2021-01-12T07:42:07Z
day: '01'
department:
- _id: KrCh
doi: 10.1145/3158122
external_id:
arxiv:
- '1709.04037'
intvolume: ' 2'
issue: POPL
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1709.04037
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication_status: published
publisher: ACM
publist_id: '7540'
quality_controlled: '1'
status: public
title: 'Lexicographic ranking supermartingales: an efficient approach to termination
of probabilistic programs'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2018'
...
---
_id: '326'
abstract:
- lang: eng
text: Three-dimensional (3D) super-resolution microscopy technique structured illumination
microscopy (SIM) imaging of dendritic spines along the dendrite has not been previously
performed in fixed tissues, mainly due to deterioration of the stripe pattern
of the excitation laser induced by light scattering and optical aberrations. To
address this issue and solve these optical problems, we applied a novel clearing
reagent, LUCID, to fixed brains. In SIM imaging, the penetration depth and the
spatial resolution were improved in LUCID-treated slices, and 160-nm spatial resolution
was obtained in a large portion of the imaging volume on a single apical dendrite.
Furthermore, in a morphological analysis of spine heads of layer V pyramidal neurons
(L5PNs) in the medial prefrontal cortex (mPFC) of chronic dexamethasone (Dex)-treated
mice, SIM imaging revealed an altered distribution of spine forms that could not
be detected by high-NA confocal imaging. Thus, super-resolution SIM imaging represents
a promising high-throughput method for revealing spine morphologies in single
dendrites.
acknowledged_ssus:
- _id: EM-Fac
article_processing_charge: No
author:
- first_name: Kazuaki
full_name: Sawada, Kazuaki
last_name: Sawada
- first_name: Ryosuke
full_name: Kawakami, Ryosuke
last_name: Kawakami
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Tomomi
full_name: Nemoto, Tomomi
last_name: Nemoto
citation:
ama: Sawada K, Kawakami R, Shigemoto R, Nemoto T. Super resolution structural analysis
of dendritic spines using three-dimensional structured illumination microscopy
in cleared mouse brain slices. European Journal of Neuroscience. 2018;47(9):1033-1042.
doi:10.1111/ejn.13901
apa: Sawada, K., Kawakami, R., Shigemoto, R., & Nemoto, T. (2018). Super resolution
structural analysis of dendritic spines using three-dimensional structured illumination
microscopy in cleared mouse brain slices. European Journal of Neuroscience.
Wiley. https://doi.org/10.1111/ejn.13901
chicago: Sawada, Kazuaki, Ryosuke Kawakami, Ryuichi Shigemoto, and Tomomi Nemoto.
“Super Resolution Structural Analysis of Dendritic Spines Using Three-Dimensional
Structured Illumination Microscopy in Cleared Mouse Brain Slices.” European
Journal of Neuroscience. Wiley, 2018. https://doi.org/10.1111/ejn.13901.
ieee: K. Sawada, R. Kawakami, R. Shigemoto, and T. Nemoto, “Super resolution structural
analysis of dendritic spines using three-dimensional structured illumination microscopy
in cleared mouse brain slices,” European Journal of Neuroscience, vol.
47, no. 9. Wiley, pp. 1033–1042, 2018.
ista: Sawada K, Kawakami R, Shigemoto R, Nemoto T. 2018. Super resolution structural
analysis of dendritic spines using three-dimensional structured illumination microscopy
in cleared mouse brain slices. European Journal of Neuroscience. 47(9), 1033–1042.
mla: Sawada, Kazuaki, et al. “Super Resolution Structural Analysis of Dendritic
Spines Using Three-Dimensional Structured Illumination Microscopy in Cleared Mouse
Brain Slices.” European Journal of Neuroscience, vol. 47, no. 9, Wiley,
2018, pp. 1033–42, doi:10.1111/ejn.13901.
short: K. Sawada, R. Kawakami, R. Shigemoto, T. Nemoto, European Journal of Neuroscience
47 (2018) 1033–1042.
date_created: 2018-12-11T11:45:50Z
date_published: 2018-03-07T00:00:00Z
date_updated: 2023-09-19T09:58:40Z
day: '07'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1111/ejn.13901
external_id:
isi:
- '000431496400001'
file:
- access_level: open_access
checksum: 98e901d8229e44aa8f3b51d248dedd09
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T16:16:50Z
date_updated: 2020-07-14T12:46:06Z
file_id: '5721'
file_name: 2018_EJN_Sawada.pdf
file_size: 4850261
relation: main_file
file_date_updated: 2020-07-14T12:46:06Z
has_accepted_license: '1'
intvolume: ' 47'
isi: 1
issue: '9'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '03'
oa: 1
oa_version: Published Version
page: 1033 - 1042
publication: European Journal of Neuroscience
publication_status: published
publisher: Wiley
publist_id: '7539'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Super resolution structural analysis of dendritic spines using three-dimensional
structured illumination microscopy in cleared mouse brain slices
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 47
year: '2018'
...
---
_id: '327'
abstract:
- lang: eng
text: Many-body quantum systems typically display fast dynamics and ballistic spreading
of information. Here we address the open problem of how slow the dynamics can
be after a generic breaking of integrability by local interactions. We develop
a method based on degenerate perturbation theory that reveals slow dynamical regimes
and delocalization processes in general translation invariant models, along with
accurate estimates of their delocalization time scales. Our results shed light
on the fundamental questions of the robustness of quantum integrable systems and
the possibility of many-body localization without disorder. As an example, we
construct a large class of one-dimensional lattice models where, despite the absence
of asymptotic localization, the transient dynamics is exceptionally slow, i.e.,
the dynamics is indistinguishable from that of many-body localized systems for
the system sizes and time scales accessible in experiments and numerical simulations.
acknowledgement: 'We thank F. Huveneers for useful discussions. Z.P. and A.M. acknowledge
support by EPSRC Grant No. EP/P009409/1 and and the Royal Society Research Grant
No. RG160635. Statement of compliance with EPSRC policy framework on research data:
This publication is theoretical work that does not require supporting research data.
D.A. acknowledges support by the Swiss National Science Foundation. M.Z., M.M. and
T.P. acknowledge Grants J1-7279 (M.Z.) and N1-0025 (M.M. and T.P.) of Slovenian
Research Agency, and Advanced Grant of European Research Council, Grant No. 694544
- OMNES (T.P.).'
article_number: '104307'
article_processing_charge: No
author:
- first_name: Alexios
full_name: Michailidis, Alexios
id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
last_name: Michailidis
orcid: 0000-0002-8443-1064
- first_name: Marko
full_name: Žnidarič, Marko
last_name: Žnidarič
- first_name: Mariya
full_name: Medvedyeva, Mariya
last_name: Medvedyeva
- first_name: Dmitry
full_name: Abanin, Dmitry
last_name: Abanin
- first_name: Tomaž
full_name: Prosen, Tomaž
last_name: Prosen
- first_name: Zlatko
full_name: Papić, Zlatko
last_name: Papić
citation:
ama: Michailidis A, Žnidarič M, Medvedyeva M, Abanin D, Prosen T, Papić Z. Slow
dynamics in translation-invariant quantum lattice models. Physical Review B.
2018;97(10). doi:10.1103/PhysRevB.97.104307
apa: Michailidis, A., Žnidarič, M., Medvedyeva, M., Abanin, D., Prosen, T., &
Papić, Z. (2018). Slow dynamics in translation-invariant quantum lattice models.
Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.97.104307
chicago: Michailidis, Alexios, Marko Žnidarič, Mariya Medvedyeva, Dmitry Abanin,
Tomaž Prosen, and Zlatko Papić. “Slow Dynamics in Translation-Invariant Quantum
Lattice Models.” Physical Review B. American Physical Society, 2018. https://doi.org/10.1103/PhysRevB.97.104307.
ieee: A. Michailidis, M. Žnidarič, M. Medvedyeva, D. Abanin, T. Prosen, and Z. Papić,
“Slow dynamics in translation-invariant quantum lattice models,” Physical Review
B, vol. 97, no. 10. American Physical Society, 2018.
ista: Michailidis A, Žnidarič M, Medvedyeva M, Abanin D, Prosen T, Papić Z. 2018.
Slow dynamics in translation-invariant quantum lattice models. Physical Review
B. 97(10), 104307.
mla: Michailidis, Alexios, et al. “Slow Dynamics in Translation-Invariant Quantum
Lattice Models.” Physical Review B, vol. 97, no. 10, 104307, American Physical
Society, 2018, doi:10.1103/PhysRevB.97.104307.
short: A. Michailidis, M. Žnidarič, M. Medvedyeva, D. Abanin, T. Prosen, Z. Papić,
Physical Review B 97 (2018).
date_created: 2018-12-11T11:45:50Z
date_published: 2018-03-19T00:00:00Z
date_updated: 2023-09-18T09:31:46Z
day: '19'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.97.104307
external_id:
isi:
- '000427798800005'
intvolume: ' 97'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1706.05026
month: '03'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '7538'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Slow dynamics in translation-invariant quantum lattice models
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 97
year: '2018'
...
---
_id: '328'
abstract:
- lang: eng
text: The drag of turbulent flows can be drastically decreased by adding small amounts
of high molecular weight polymers. While drag reduction initially increases with
polymer concentration, it eventually saturates to what is known as the maximum
drag reduction (MDR) asymptote; this asymptote is generally attributed to the
dynamics being reduced to a marginal yet persistent state of subdued turbulent
motion. Contrary to this accepted view, we show that, for an appropriate choice
of parameters, polymers can reduce the drag beyond the suggested asymptotic limit,
eliminating turbulence and giving way to laminar flow. At higher polymer concentrations,
however, the laminar state becomes unstable, resulting in a fluctuating flow with
the characteristic drag of the MDR asymptote. Our findings indicate that the asymptotic
state is hence dynamically disconnected from ordinary turbulence. © 2018 American
Physical Society.
acknowledged_ssus:
- _id: SSU
acknowledgement: The authors thank Philipp Maier and the IST Austria workshop for
their dedicated technical support.
article_number: '124501'
article_processing_charge: No
author:
- first_name: George H
full_name: Choueiri, George H
id: 448BD5BC-F248-11E8-B48F-1D18A9856A87
last_name: Choueiri
- first_name: Jose M
full_name: Lopez Alonso, Jose M
id: 40770848-F248-11E8-B48F-1D18A9856A87
last_name: Lopez Alonso
orcid: 0000-0002-0384-2022
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Choueiri GH, Lopez Alonso JM, Hof B. Exceeding the asymptotic limit of polymer
drag reduction. Physical Review Letters. 2018;120(12). doi:10.1103/PhysRevLett.120.124501
apa: Choueiri, G. H., Lopez Alonso, J. M., & Hof, B. (2018). Exceeding the asymptotic
limit of polymer drag reduction. Physical Review Letters. American Physical
Society. https://doi.org/10.1103/PhysRevLett.120.124501
chicago: Choueiri, George H, Jose M Lopez Alonso, and Björn Hof. “Exceeding the
Asymptotic Limit of Polymer Drag Reduction.” Physical Review Letters. American
Physical Society, 2018. https://doi.org/10.1103/PhysRevLett.120.124501.
ieee: G. H. Choueiri, J. M. Lopez Alonso, and B. Hof, “Exceeding the asymptotic
limit of polymer drag reduction,” Physical Review Letters, vol. 120, no.
12. American Physical Society, 2018.
ista: Choueiri GH, Lopez Alonso JM, Hof B. 2018. Exceeding the asymptotic limit
of polymer drag reduction. Physical Review Letters. 120(12), 124501.
mla: Choueiri, George H., et al. “Exceeding the Asymptotic Limit of Polymer Drag
Reduction.” Physical Review Letters, vol. 120, no. 12, 124501, American
Physical Society, 2018, doi:10.1103/PhysRevLett.120.124501.
short: G.H. Choueiri, J.M. Lopez Alonso, B. Hof, Physical Review Letters 120 (2018).
date_created: 2018-12-11T11:45:51Z
date_published: 2018-03-19T00:00:00Z
date_updated: 2023-10-10T13:27:44Z
day: '19'
department:
- _id: BjHo
doi: 10.1103/PhysRevLett.120.124501
ec_funded: 1
external_id:
isi:
- '000427804000005'
intvolume: ' 120'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1703.06271
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 25152F3A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '306589'
name: Decoding the complexity of turbulence at its origin
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
publist_id: '7537'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Exceeding the asymptotic limit of polymer drag reduction
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 120
year: '2018'
...
---
_id: '33'
abstract:
- lang: eng
text: Secondary contact is the reestablishment of gene flow between sister populations
that have diverged. For instance, at the end of the Quaternary glaciations in
Europe, secondary contact occurred during the northward expansion of the populations
which had found refugia in the southern peninsulas. With the advent of multi-locus
markers, secondary contact can be investigated using various molecular signatures
including gradients of allele frequency, admixture clines, and local increase
of genetic differentiation. We use coalescent simulations to investigate if molecular
data provide enough information to distinguish between secondary contact following
range expansion and an alternative evolutionary scenario consisting of a barrier
to gene flow in an isolation-by-distance model. We find that an excess of linkage
disequilibrium and of genetic diversity at the suture zone is a unique signature
of secondary contact. We also find that the directionality index ψ, which was
proposed to study range expansion, is informative to distinguish between the two
hypotheses. However, although evidence for secondary contact is usually conveyed
by statistics related to admixture coefficients, we find that they can be confounded
by isolation-by-distance. We recommend to account for the spatial repartition
of individuals when investigating secondary contact in order to better reflect
the complex spatio-temporal evolution of populations and species.
acknowledgement: 'Johanna Bertl was supported by the Vienna Graduate School of Population
Genetics (Austrian Science Fund (FWF): W1225-B20) and worked on this project while
employed at the Department of Statistics and Operations Research, University of
Vienna, Austria. This article was developed in the framework of the Grenoble Alpes
Data Institute, which is supported by the French National Research Agency under
the “Investissments d’avenir” program (ANR-15-IDEX-02).'
article_number: e5325
article_processing_charge: No
author:
- first_name: Johanna
full_name: Bertl, Johanna
last_name: Bertl
- first_name: Harald
full_name: Ringbauer, Harald
id: 417FCFF4-F248-11E8-B48F-1D18A9856A87
last_name: Ringbauer
orcid: 0000-0002-4884-9682
- first_name: Michaël
full_name: Blum, Michaël
last_name: Blum
citation:
ama: Bertl J, Ringbauer H, Blum M. Can secondary contact following range expansion
be distinguished from barriers to gene flow? PeerJ. 2018;2018(10). doi:10.7717/peerj.5325
apa: Bertl, J., Ringbauer, H., & Blum, M. (2018). Can secondary contact following
range expansion be distinguished from barriers to gene flow? PeerJ. PeerJ.
https://doi.org/10.7717/peerj.5325
chicago: Bertl, Johanna, Harald Ringbauer, and Michaël Blum. “Can Secondary Contact
Following Range Expansion Be Distinguished from Barriers to Gene Flow?” PeerJ.
PeerJ, 2018. https://doi.org/10.7717/peerj.5325.
ieee: J. Bertl, H. Ringbauer, and M. Blum, “Can secondary contact following range
expansion be distinguished from barriers to gene flow?,” PeerJ, vol. 2018,
no. 10. PeerJ, 2018.
ista: Bertl J, Ringbauer H, Blum M. 2018. Can secondary contact following range
expansion be distinguished from barriers to gene flow? PeerJ. 2018(10), e5325.
mla: Bertl, Johanna, et al. “Can Secondary Contact Following Range Expansion Be
Distinguished from Barriers to Gene Flow?” PeerJ, vol. 2018, no. 10, e5325,
PeerJ, 2018, doi:10.7717/peerj.5325.
short: J. Bertl, H. Ringbauer, M. Blum, PeerJ 2018 (2018).
date_created: 2018-12-11T11:44:16Z
date_published: 2018-10-01T00:00:00Z
date_updated: 2023-10-17T12:24:43Z
day: '01'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.7717/peerj.5325
external_id:
isi:
- '000447204400001'
pmid:
- '30294507'
file:
- access_level: open_access
checksum: 3334886c4b39678db4c4b74299ca14ba
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:46:06Z
date_updated: 2020-07-14T12:46:06Z
file_id: '5692'
file_name: 2018_PeerJ_Bertl.pdf
file_size: 1328344
relation: main_file
file_date_updated: 2020-07-14T12:46:06Z
has_accepted_license: '1'
intvolume: ' 2018'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: PeerJ
publication_status: published
publisher: PeerJ
publist_id: '8022'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Can secondary contact following range expansion be distinguished from barriers
to gene flow?
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2018
year: '2018'
...
---
_id: '3300'
abstract:
- lang: eng
text: "This book first explores the origins of this idea, grounded in theoretical
work on temporal logic and automata. The editors and authors are among the world's
leading researchers in this domain, and they contributed 32 chapters representing
a thorough view of the development and application of the technique. Topics covered
include binary decision diagrams, symbolic model checking, satisfiability modulo
theories, partial-order reduction, abstraction, interpolation, concurrency, security
protocols, games, probabilistic model checking, and process algebra, and chapters
on the transfer of theory to industrial practice, property specification languages
for hardware, and verification of real-time systems and hybrid systems.\r\n\r\nThe
book will be valuable for researchers and graduate students engaged with the development
of formal methods and verification tools."
article_processing_charge: No
author:
- first_name: Edmund M.
full_name: Clarke, Edmund M.
last_name: Clarke
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Helmut
full_name: Veith, Helmut
last_name: Veith
- first_name: Roderick
full_name: Bloem, Roderick
last_name: Bloem
citation:
ama: 'Clarke EM, Henzinger TA, Veith H, Bloem R. Handbook of Model Checking.
1st ed. Cham: Springer Nature; 2018. doi:10.1007/978-3-319-10575-8'
apa: 'Clarke, E. M., Henzinger, T. A., Veith, H., & Bloem, R. (2018). Handbook
of Model Checking (1st ed.). Cham: Springer Nature. https://doi.org/10.1007/978-3-319-10575-8'
chicago: 'Clarke, Edmund M., Thomas A Henzinger, Helmut Veith, and Roderick Bloem.
Handbook of Model Checking. 1st ed. Cham: Springer Nature, 2018. https://doi.org/10.1007/978-3-319-10575-8.'
ieee: 'E. M. Clarke, T. A. Henzinger, H. Veith, and R. Bloem, Handbook of Model
Checking, 1st ed. Cham: Springer Nature, 2018.'
ista: 'Clarke EM, Henzinger TA, Veith H, Bloem R. 2018. Handbook of Model Checking
1st ed., Cham: Springer Nature, XLVIII, 1212p.'
mla: Clarke, Edmund M., et al. Handbook of Model Checking. 1st ed., Springer
Nature, 2018, doi:10.1007/978-3-319-10575-8.
short: E.M. Clarke, T.A. Henzinger, H. Veith, R. Bloem, Handbook of Model Checking,
1st ed., Springer Nature, Cham, 2018.
date_created: 2018-12-11T12:02:32Z
date_published: 2018-06-08T00:00:00Z
date_updated: 2025-07-24T09:25:31Z
day: '08'
department:
- _id: ToHe
doi: 10.1007/978-3-319-10575-8
edition: '1'
language:
- iso: eng
month: '06'
oa_version: None
page: XLVIII, 1212
place: Cham
publication_identifier:
eisbn:
- 978-3-319-10575-8
isbn:
- 978-3-319-10574-1
publication_status: published
publisher: Springer Nature
publist_id: '3340'
quality_controlled: '1'
retracted: '1'
scopus_import: '1'
status: public
title: Handbook of Model Checking
type: book
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '34'
abstract:
- lang: eng
text: Partially observable Markov decision processes (POMDPs) are widely used in
probabilistic planning problems in which an agent interacts with an environment
using noisy and imprecise sensors. We study a setting in which the sensors are
only partially defined and the goal is to synthesize “weakest” additional sensors,
such that in the resulting POMDP, there is a small-memory policy for the agent
that almost-surely (with probability 1) satisfies a reachability objective. We
show that the problem is NP-complete, and present a symbolic algorithm by encoding
the problem into SAT instances. We illustrate trade-offs between the amount of
memory of the policy and the number of additional sensors on a simple example.
We have implemented our approach and consider three classical POMDP examples from
the literature, and show that in all the examples the number of sensors can be
significantly decreased (as compared to the existing solutions in the literature)
without increasing the complexity of the policies.
alternative_title:
- ICAPS
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Chemlík, Martin
last_name: Chemlík
- first_name: Ufuk
full_name: Topcu, Ufuk
last_name: Topcu
citation:
ama: 'Chatterjee K, Chemlík M, Topcu U. Sensor synthesis for POMDPs with reachability
objectives. In: Vol 2018. AAAI Press; 2018:47-55.'
apa: 'Chatterjee, K., Chemlík, M., & Topcu, U. (2018). Sensor synthesis for
POMDPs with reachability objectives (Vol. 2018, pp. 47–55). Presented at the ICAPS:
International Conference on Automated Planning and Scheduling, Delft, Netherlands:
AAAI Press.'
chicago: Chatterjee, Krishnendu, Martin Chemlík, and Ufuk Topcu. “Sensor Synthesis
for POMDPs with Reachability Objectives,” 2018:47–55. AAAI Press, 2018.
ieee: 'K. Chatterjee, M. Chemlík, and U. Topcu, “Sensor synthesis for POMDPs with
reachability objectives,” presented at the ICAPS: International Conference on
Automated Planning and Scheduling, Delft, Netherlands, 2018, vol. 2018, pp. 47–55.'
ista: 'Chatterjee K, Chemlík M, Topcu U. 2018. Sensor synthesis for POMDPs with
reachability objectives. ICAPS: International Conference on Automated Planning
and Scheduling, ICAPS, vol. 2018, 47–55.'
mla: Chatterjee, Krishnendu, et al. Sensor Synthesis for POMDPs with Reachability
Objectives. Vol. 2018, AAAI Press, 2018, pp. 47–55.
short: K. Chatterjee, M. Chemlík, U. Topcu, in:, AAAI Press, 2018, pp. 47–55.
conference:
end_date: 2018-06-29
location: Delft, Netherlands
name: 'ICAPS: International Conference on Automated Planning and Scheduling'
start_date: 2018-06-24
date_created: 2018-12-11T11:44:16Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-19T14:44:14Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
external_id:
arxiv:
- '1710.00675'
isi:
- '000492986200006'
intvolume: ' 2018'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1710.00675
month: '06'
oa: 1
oa_version: Preprint
page: 47 - 55
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication_status: published
publisher: AAAI Press
publist_id: '8021'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sensor synthesis for POMDPs with reachability objectives
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 2018
year: '2018'
...
---
_id: '35'
abstract:
- lang: eng
text: 'We consider planning problems for graphs, Markov decision processes (MDPs),
and games on graphs. While graphs represent the most basic planning model, MDPs
represent interaction with nature and games on graphs represent interaction with
an adversarial environment. We consider two planning problems where there are
k different target sets, and the problems are as follows: (a) the coverage problem
asks whether there is a plan for each individual target set; and (b) the sequential
target reachability problem asks whether the targets can be reached in sequence.
For the coverage problem, we present a linear-time algorithm for graphs, and quadratic
conditional lower bound for MDPs and games on graphs. For the sequential target
problem, we present a linear-time algorithm for graphs, a sub-quadratic algorithm
for MDPs, and a quadratic conditional lower bound for games on graphs. Our results
with conditional lower bounds establish (i) model-separation results showing that
for the coverage problem MDPs and games on graphs are harder than graphs and for
the sequential reachability problem games on graphs are harder than MDPs and graphs;
and (ii) objective-separation results showing that for MDPs the coverage problem
is harder than the sequential target problem.'
article_processing_charge: No
arxiv: 1
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Wolfgang
full_name: Dvorák, Wolfgang
last_name: Dvorák
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Alexander
full_name: Svozil, Alexander
last_name: Svozil
citation:
ama: 'Chatterjee K, Dvorák W, Henzinger MH, Svozil A. Algorithms and conditional
lower bounds for planning problems. In: 28th International Conference on Automated
Planning and Scheduling . AAAI Press; 2018.'
apa: 'Chatterjee, K., Dvorák, W., Henzinger, M. H., & Svozil, A. (2018). Algorithms
and conditional lower bounds for planning problems. In 28th International Conference
on Automated Planning and Scheduling . Delft, Netherlands: AAAI Press.'
chicago: Chatterjee, Krishnendu, Wolfgang Dvorák, Monika H Henzinger, and Alexander
Svozil. “Algorithms and Conditional Lower Bounds for Planning Problems.” In 28th
International Conference on Automated Planning and Scheduling . AAAI Press,
2018.
ieee: K. Chatterjee, W. Dvorák, M. H. Henzinger, and A. Svozil, “Algorithms and
conditional lower bounds for planning problems,” in 28th International Conference
on Automated Planning and Scheduling , Delft, Netherlands, 2018.
ista: 'Chatterjee K, Dvorák W, Henzinger MH, Svozil A. 2018. Algorithms and conditional
lower bounds for planning problems. 28th International Conference on Automated
Planning and Scheduling . ICAPS: International Conference on Automated Planning
and Scheduling.'
mla: Chatterjee, Krishnendu, et al. “Algorithms and Conditional Lower Bounds for
Planning Problems.” 28th International Conference on Automated Planning and
Scheduling , AAAI Press, 2018.
short: K. Chatterjee, W. Dvorák, M.H. Henzinger, A. Svozil, in:, 28th International
Conference on Automated Planning and Scheduling , AAAI Press, 2018.
conference:
end_date: 2018-06-29
location: Delft, Netherlands
name: 'ICAPS: International Conference on Automated Planning and Scheduling'
start_date: 2018-06-24
date_created: 2018-12-11T11:44:17Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-26T10:41:41Z
day: '01'
department:
- _id: KrCh
ec_funded: 1
external_id:
arxiv:
- '1804.07031'
isi:
- '000492986200007'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.07031
month: '06'
oa: 1
oa_version: None
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
publication: '28th International Conference on Automated Planning and Scheduling '
publication_status: published
publisher: AAAI Press
publist_id: '8020'
quality_controlled: '1'
related_material:
record:
- id: '9293'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Algorithms and conditional lower bounds for planning problems
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '36'
abstract:
- lang: eng
text: Wheat (Triticum ssp.) is one of the most important human food sources. However,
this crop is very sensitive to temperature changes. Specifically, processes during
wheat leaf, flower, and seed development and photosynthesis, which all contribute
to the yield of this crop, are affected by high temperature. While this has to
some extent been investigated on physiological, developmental, and molecular levels,
very little is known about early signalling events associated with an increase
in temperature. Phosphorylation-mediated signalling mechanisms, which are quick
and dynamic, are associated with plant growth and development, also under abiotic
stress conditions. Therefore, we probed the impact of a short-term and mild increase
in temperature on the wheat leaf and spikelet phosphoproteome. In total, 3822
(containing 5178 phosphosites) and 5581 phosphopeptides (containing 7023 phosphosites)
were identified in leaf and spikelet samples, respectively. Following statistical
analysis, the resulting data set provides the scientific community with a first
large-scale plant phosphoproteome under the control of higher ambient temperature.
This community resource on the high temperature-mediated wheat phosphoproteome
will be valuable for future studies. Our analyses also revealed a core set of
common proteins between leaf and spikelet, suggesting some level of conserved
regulatory mechanisms. Furthermore, we observed temperature-regulated interconversion
of phosphoforms, which probably impacts protein activity.
acknowledgement: TZ is supported by a grant from the Chinese Scholarship Council.
article_processing_charge: No
author:
- first_name: Lam
full_name: Vu, Lam
last_name: Vu
- first_name: Tingting
full_name: Zhu, Tingting
last_name: Zhu
- first_name: Inge
full_name: Verstraeten, Inge
id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
last_name: Verstraeten
orcid: 0000-0001-7241-2328
- first_name: Brigitte
full_name: Van De Cotte, Brigitte
last_name: Van De Cotte
- first_name: Kris
full_name: Gevaert, Kris
last_name: Gevaert
- first_name: Ive
full_name: De Smet, Ive
last_name: De Smet
citation:
ama: Vu L, Zhu T, Verstraeten I, Van De Cotte B, Gevaert K, De Smet I. Temperature-induced
changes in the wheat phosphoproteome reveal temperature-regulated interconversion
of phosphoforms. Journal of Experimental Botany. 2018;69(19):4609-4624.
doi:10.1093/jxb/ery204
apa: Vu, L., Zhu, T., Verstraeten, I., Van De Cotte, B., Gevaert, K., & De Smet,
I. (2018). Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated
interconversion of phosphoforms. Journal of Experimental Botany. Oxford
University Press. https://doi.org/10.1093/jxb/ery204
chicago: Vu, Lam, Tingting Zhu, Inge Verstraeten, Brigitte Van De Cotte, Kris Gevaert,
and Ive De Smet. “Temperature-Induced Changes in the Wheat Phosphoproteome Reveal
Temperature-Regulated Interconversion of Phosphoforms.” Journal of Experimental
Botany. Oxford University Press, 2018. https://doi.org/10.1093/jxb/ery204.
ieee: L. Vu, T. Zhu, I. Verstraeten, B. Van De Cotte, K. Gevaert, and I. De Smet,
“Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated
interconversion of phosphoforms,” Journal of Experimental Botany, vol.
69, no. 19. Oxford University Press, pp. 4609–4624, 2018.
ista: Vu L, Zhu T, Verstraeten I, Van De Cotte B, Gevaert K, De Smet I. 2018. Temperature-induced
changes in the wheat phosphoproteome reveal temperature-regulated interconversion
of phosphoforms. Journal of Experimental Botany. 69(19), 4609–4624.
mla: Vu, Lam, et al. “Temperature-Induced Changes in the Wheat Phosphoproteome Reveal
Temperature-Regulated Interconversion of Phosphoforms.” Journal of Experimental
Botany, vol. 69, no. 19, Oxford University Press, 2018, pp. 4609–24, doi:10.1093/jxb/ery204.
short: L. Vu, T. Zhu, I. Verstraeten, B. Van De Cotte, K. Gevaert, I. De Smet, Journal
of Experimental Botany 69 (2018) 4609–4624.
date_created: 2018-12-11T11:44:17Z
date_published: 2018-08-31T00:00:00Z
date_updated: 2023-09-19T10:00:46Z
day: '31'
ddc:
- '581'
department:
- _id: JiFr
doi: 10.1093/jxb/ery204
external_id:
isi:
- '000443568700010'
file:
- access_level: open_access
checksum: 34cb0a1611588b75bd6f4913fb4e30f1
content_type: application/pdf
creator: dernst
date_created: 2018-12-18T09:47:51Z
date_updated: 2020-07-14T12:46:13Z
file_id: '5741'
file_name: 2018_JournalExperimBotany_Vu.pdf
file_size: 3359316
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file_date_updated: 2020-07-14T12:46:13Z
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isi: 1
issue: '19'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 4609 - 4624
publication: Journal of Experimental Botany
publication_status: published
publisher: Oxford University Press
publist_id: '8019'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated
interconversion of phosphoforms
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 69
year: '2018'
...
---
_id: '37'
abstract:
- lang: eng
text: Developmental processes are inherently dynamic and understanding them requires
quantitative measurements of gene and protein expression levels in space and time.
While live imaging is a powerful approach for obtaining such data, it is still
a challenge to apply it over long periods of time to large tissues, such as the
embryonic spinal cord in mouse and chick. Nevertheless, dynamics of gene expression
and signaling activity patterns in this organ can be studied by collecting tissue
sections at different developmental stages. In combination with immunohistochemistry,
this allows for measuring the levels of multiple developmental regulators in a
quantitative manner with high spatiotemporal resolution. The mean protein expression
levels over time, as well as embryo-to-embryo variability can be analyzed. A key
aspect of the approach is the ability to compare protein levels across different
samples. This requires a number of considerations in sample preparation, imaging
and data analysis. Here we present a protocol for obtaining time course data of
dorsoventral expression patterns from mouse and chick neural tube in the first
3 days of neural tube development. The described workflow starts from embryo dissection
and ends with a processed dataset. Software scripts for data analysis are included.
The protocol is adaptable and instructions that allow the user to modify different
steps are provided. Thus, the procedure can be altered for analysis of time-lapse
images and applied to systems other than the neural tube.
alternative_title:
- Methods in Molecular Biology
article_processing_charge: No
author:
- first_name: Marcin P
full_name: Zagórski, Marcin P
id: 343DA0DC-F248-11E8-B48F-1D18A9856A87
last_name: Zagórski
orcid: 0000-0001-7896-7762
- first_name: Anna
full_name: Kicheva, Anna
id: 3959A2A0-F248-11E8-B48F-1D18A9856A87
last_name: Kicheva
orcid: 0000-0003-4509-4998
citation:
ama: 'Zagórski MP, Kicheva A. Measuring dorsoventral pattern and morphogen signaling
profiles in the growing neural tube. In: Morphogen Gradients . Vol 1863.
MIMB. Springer Nature; 2018:47-63. doi:10.1007/978-1-4939-8772-6_4'
apa: Zagórski, M. P., & Kicheva, A. (2018). Measuring dorsoventral pattern and
morphogen signaling profiles in the growing neural tube. In Morphogen Gradients
(Vol. 1863, pp. 47–63). Springer Nature. https://doi.org/10.1007/978-1-4939-8772-6_4
chicago: Zagórski, Marcin P, and Anna Kicheva. “Measuring Dorsoventral Pattern and
Morphogen Signaling Profiles in the Growing Neural Tube.” In Morphogen Gradients
, 1863:47–63. MIMB. Springer Nature, 2018. https://doi.org/10.1007/978-1-4939-8772-6_4.
ieee: M. P. Zagórski and A. Kicheva, “Measuring dorsoventral pattern and morphogen
signaling profiles in the growing neural tube,” in Morphogen Gradients ,
vol. 1863, Springer Nature, 2018, pp. 47–63.
ista: 'Zagórski MP, Kicheva A. 2018.Measuring dorsoventral pattern and morphogen
signaling profiles in the growing neural tube. In: Morphogen Gradients . Methods
in Molecular Biology, vol. 1863, 47–63.'
mla: Zagórski, Marcin P., and Anna Kicheva. “Measuring Dorsoventral Pattern and
Morphogen Signaling Profiles in the Growing Neural Tube.” Morphogen Gradients
, vol. 1863, Springer Nature, 2018, pp. 47–63, doi:10.1007/978-1-4939-8772-6_4.
short: M.P. Zagórski, A. Kicheva, in:, Morphogen Gradients , Springer Nature, 2018,
pp. 47–63.
date_created: 2018-12-11T11:44:17Z
date_published: 2018-10-16T00:00:00Z
date_updated: 2021-01-12T07:49:03Z
day: '16'
ddc:
- '570'
department:
- _id: AnKi
doi: 10.1007/978-1-4939-8772-6_4
ec_funded: 1
file:
- access_level: open_access
checksum: 2a97d0649fdcfcf1bdca7c8ad1dce71b
content_type: application/pdf
creator: dernst
date_created: 2020-10-13T14:20:37Z
date_updated: 2020-10-13T14:20:37Z
file_id: '8656'
file_name: 2018_MIMB_Zagorski.pdf
file_size: 4906815
relation: main_file
success: 1
file_date_updated: 2020-10-13T14:20:37Z
has_accepted_license: '1'
intvolume: ' 1863'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 47 - 63
project:
- _id: B6FC0238-B512-11E9-945C-1524E6697425
call_identifier: H2020
grant_number: '680037'
name: Coordination of Patterning And Growth In the Spinal Cord
publication: 'Morphogen Gradients '
publication_identifier:
isbn:
- 978-1-4939-8771-9
issn:
- 1064-3745
publication_status: published
publisher: Springer Nature
publist_id: '8018'
quality_controlled: '1'
scopus_import: '1'
series_title: MIMB
status: public
title: Measuring dorsoventral pattern and morphogen signaling profiles in the growing
neural tube
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1863
year: '2018'
...
---
_id: '38'
abstract:
- lang: eng
text: 'Genomes of closely-related species or populations often display localized
regions of enhanced relative sequence divergence, termed genomic islands. It has
been proposed that these islands arise through selective sweeps and/or barriers
to gene flow. Here, we genetically dissect a genomic island that controls flower
color pattern differences between two subspecies of Antirrhinum majus, A.m.striatum
and A.m.pseudomajus, and relate it to clinal variation across a natural hybrid
zone. We show that selective sweeps likely raised relative divergence at two tightly-linked
MYB-like transcription factors, leading to distinct flower patterns in the two
subspecies. The two patterns provide alternate floral guides and create a strong
barrier to gene flow where populations come into contact. This barrier affects
the selected flower color genes and tightlylinked loci, but does not extend outside
of this domain, allowing gene flow to lower relative divergence for the rest of
the chromosome. Thus, both selective sweeps and barriers to gene flow play a role
in shaping genomic islands: sweeps cause elevation in relative divergence, while
heterogeneous gene flow flattens the surrounding "sea," making the island of divergence
stand out. By showing how selective sweeps establish alternative adaptive phenotypes
that lead to barriers to gene flow, our study sheds light on possible mechanisms
leading to reproductive isolation and speciation.'
acknowledgement: ' ERC Grant 201252 (to N.H.B.)'
article_processing_charge: No
author:
- first_name: Hugo
full_name: Tavares, Hugo
last_name: Tavares
- first_name: Annabel
full_name: Whitley, Annabel
last_name: Whitley
- first_name: David
full_name: Field, David
id: 419049E2-F248-11E8-B48F-1D18A9856A87
last_name: Field
orcid: 0000-0002-4014-8478
- first_name: Desmond
full_name: Bradley, Desmond
last_name: Bradley
- first_name: Matthew
full_name: Couchman, Matthew
last_name: Couchman
- first_name: Lucy
full_name: Copsey, Lucy
last_name: Copsey
- first_name: Joane
full_name: Elleouet, Joane
last_name: Elleouet
- first_name: Monique
full_name: Burrus, Monique
last_name: Burrus
- first_name: Christophe
full_name: Andalo, Christophe
last_name: Andalo
- first_name: Miaomiao
full_name: Li, Miaomiao
last_name: Li
- first_name: Qun
full_name: Li, Qun
last_name: Li
- first_name: Yongbiao
full_name: Xue, Yongbiao
last_name: Xue
- first_name: Alexandra B
full_name: Rebocho, Alexandra B
last_name: Rebocho
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Enrico
full_name: Coen, Enrico
last_name: Coen
citation:
ama: Tavares H, Whitley A, Field D, et al. Selection and gene flow shape genomic
islands that control floral guides. PNAS. 2018;115(43):11006-11011. doi:10.1073/pnas.1801832115
apa: Tavares, H., Whitley, A., Field, D., Bradley, D., Couchman, M., Copsey, L.,
… Coen, E. (2018). Selection and gene flow shape genomic islands that control
floral guides. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1801832115
chicago: Tavares, Hugo, Annabel Whitley, David Field, Desmond Bradley, Matthew Couchman,
Lucy Copsey, Joane Elleouet, et al. “Selection and Gene Flow Shape Genomic Islands
That Control Floral Guides.” PNAS. National Academy of Sciences, 2018.
https://doi.org/10.1073/pnas.1801832115.
ieee: H. Tavares et al., “Selection and gene flow shape genomic islands that
control floral guides,” PNAS, vol. 115, no. 43. National Academy of Sciences,
pp. 11006–11011, 2018.
ista: Tavares H, Whitley A, Field D, Bradley D, Couchman M, Copsey L, Elleouet J,
Burrus M, Andalo C, Li M, Li Q, Xue Y, Rebocho AB, Barton NH, Coen E. 2018. Selection
and gene flow shape genomic islands that control floral guides. PNAS. 115(43),
11006–11011.
mla: Tavares, Hugo, et al. “Selection and Gene Flow Shape Genomic Islands That Control
Floral Guides.” PNAS, vol. 115, no. 43, National Academy of Sciences, 2018,
pp. 11006–11, doi:10.1073/pnas.1801832115.
short: H. Tavares, A. Whitley, D. Field, D. Bradley, M. Couchman, L. Copsey, J.
Elleouet, M. Burrus, C. Andalo, M. Li, Q. Li, Y. Xue, A.B. Rebocho, N.H. Barton,
E. Coen, PNAS 115 (2018) 11006–11011.
date_created: 2018-12-11T11:44:18Z
date_published: 2018-10-23T00:00:00Z
date_updated: 2023-09-18T08:36:49Z
day: '23'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1073/pnas.1801832115
external_id:
isi:
- '000448040500065'
pmid:
- '30297406'
file:
- access_level: open_access
checksum: d2305d0cc81dbbe4c1c677d64ad6f6d1
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T08:44:03Z
date_updated: 2020-07-14T12:46:16Z
file_id: '5683'
file_name: 11006.full.pdf
file_size: 1911302
relation: main_file
file_date_updated: 2020-07-14T12:46:16Z
has_accepted_license: '1'
intvolume: ' 115'
isi: 1
issue: '43'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 11006 - 11011
pmid: 1
publication: PNAS
publication_identifier:
issn:
- '00278424'
publication_status: published
publisher: National Academy of Sciences
publist_id: '8017'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Selection and gene flow shape genomic islands that control floral guides
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 115
year: '2018'
...
---
_id: '384'
abstract:
- lang: eng
text: Can orthologous proteins differ in terms of their ability to be secreted?
To answer this question, we investigated the distribution of signal peptides within
the orthologous groups of Enterobacterales. Parsimony analysis and sequence comparisons
revealed a large number of signal peptide gain and loss events, in which signal
peptides emerge or disappear in the course of evolution. Signal peptide losses
prevail over gains, an effect which is especially pronounced in the transition
from the free-living or commensal to the endosymbiotic lifestyle. The disproportionate
decline in the number of signal peptide-containing proteins in endosymbionts cannot
be explained by the overall reduction of their genomes. Signal peptides can be
gained and lost either by acquisition/elimination of the corresponding N-terminal
regions or by gradual accumulation of mutations. The evolutionary dynamics of
signal peptides in bacterial proteins represents a powerful mechanism of functional
diversification.
acknowledgement: "his work was supported by the Deutsche Forschungsgemeinschaft (grant
\ number FR 1411/9-1). This work was supported by the German Research Foundation
(DFG) and the Technical University of Munich within the fund- ing programme Open
Access Publish\r\nWe thank Goar Frishman for help with the annotation of the\r\nsymbiont
status of the organisms and Michael Galperin for\r\nuseful comments. T"
article_processing_charge: No
author:
- first_name: Peter
full_name: Hönigschmid, Peter
last_name: Hönigschmid
- first_name: Nadya
full_name: Bykova, Nadya
last_name: Bykova
- first_name: René
full_name: Schneider, René
last_name: Schneider
- first_name: Dmitry
full_name: Ivankov, Dmitry
id: 49FF1036-F248-11E8-B48F-1D18A9856A87
last_name: Ivankov
- first_name: Dmitrij
full_name: Frishman, Dmitrij
last_name: Frishman
citation:
ama: Hönigschmid P, Bykova N, Schneider R, Ivankov D, Frishman D. Evolutionary interplay
between symbiotic relationships and patterns of signal peptide gain and loss.
Genome Biology and Evolution. 2018;10(3):928-938. doi:10.1093/gbe/evy049
apa: Hönigschmid, P., Bykova, N., Schneider, R., Ivankov, D., & Frishman, D.
(2018). Evolutionary interplay between symbiotic relationships and patterns of
signal peptide gain and loss. Genome Biology and Evolution. Oxford University
Press. https://doi.org/10.1093/gbe/evy049
chicago: Hönigschmid, Peter, Nadya Bykova, René Schneider, Dmitry Ivankov, and Dmitrij
Frishman. “Evolutionary Interplay between Symbiotic Relationships and Patterns
of Signal Peptide Gain and Loss.” Genome Biology and Evolution. Oxford
University Press, 2018. https://doi.org/10.1093/gbe/evy049.
ieee: P. Hönigschmid, N. Bykova, R. Schneider, D. Ivankov, and D. Frishman, “Evolutionary
interplay between symbiotic relationships and patterns of signal peptide gain
and loss,” Genome Biology and Evolution, vol. 10, no. 3. Oxford University
Press, pp. 928–938, 2018.
ista: Hönigschmid P, Bykova N, Schneider R, Ivankov D, Frishman D. 2018. Evolutionary
interplay between symbiotic relationships and patterns of signal peptide gain
and loss. Genome Biology and Evolution. 10(3), 928–938.
mla: Hönigschmid, Peter, et al. “Evolutionary Interplay between Symbiotic Relationships
and Patterns of Signal Peptide Gain and Loss.” Genome Biology and Evolution,
vol. 10, no. 3, Oxford University Press, 2018, pp. 928–38, doi:10.1093/gbe/evy049.
short: P. Hönigschmid, N. Bykova, R. Schneider, D. Ivankov, D. Frishman, Genome
Biology and Evolution 10 (2018) 928–938.
date_created: 2018-12-11T11:46:10Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-11T13:56:52Z
day: '01'
ddc:
- '576'
department:
- _id: FyKo
doi: 10.1093/gbe/evy049
external_id:
isi:
- '000429483700022'
file:
- access_level: open_access
checksum: 458a7c2c2e79528567edfeb0f326cbe0
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:08:07Z
date_updated: 2020-07-14T12:46:16Z
file_id: '4667'
file_name: IST-2018-999-v1+1_2018_Ivankov_Evolutionary_interplay.pdf
file_size: 691602
relation: main_file
file_date_updated: 2020-07-14T12:46:16Z
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 928 - 938
publication: Genome Biology and Evolution
publication_status: published
publisher: Oxford University Press
publist_id: '7445'
pubrep_id: '999'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Evolutionary interplay between symbiotic relationships and patterns of signal
peptide gain and loss
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10
year: '2018'
...