---
_id: '9895'
abstract:
- lang: eng
  text: Additional information on proteins from OG1. (CSV 30 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 19 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 19 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">https://doi.org/10.6084/m9.figshare.9808835.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 19 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">https://doi.org/10.6084/m9.figshare.9808835.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 19 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 19 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 19 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808835.v1">10.6084/m9.figshare.9808835.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:44:52Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808835.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808835.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 19 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9896'
abstract:
- lang: eng
  text: Summary of the analysed genomes. (CSV 24 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 1 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 1 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">https://doi.org/10.6084/m9.figshare.9808841.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 1 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">https://doi.org/10.6084/m9.figshare.9808841.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 1 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 1 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 1 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808841.v1">10.6084/m9.figshare.9808841.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:50:53Z
date_published: 2019-09-02T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '02'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808841.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808841.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 1 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9897'
abstract:
- lang: eng
  text: Frameshift and nonsense mutations near homopolymeric tracts of OG1 genes.
    Only 374 genes with typical length and domain composition were considered. (CSV
    6 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 20 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 20 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">https://doi.org/10.6084/m9.figshare.9808850.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 20 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">https://doi.org/10.6084/m9.figshare.9808850.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 20 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 20 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 20 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808850.v1">10.6084/m9.figshare.9808850.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T07:58:15Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:21Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808850.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808850.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 20 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9898'
abstract:
- lang: eng
  text: All polyN tracts of length 5 or more nucleotides in sequences of genes from
    OG1. Sequences were extracted and scanned prior to automatic correction for frameshifts
    implemented in the RAST pipeline. (CSV 133 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 21 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 21 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">https://doi.org/10.6084/m9.figshare.9808859.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 21 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">https://doi.org/10.6084/m9.figshare.9808859.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 21 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 21 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 21 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808859.v1">10.6084/m9.figshare.9808859.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:10:23Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808859.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808859.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 21 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9899'
abstract:
- lang: eng
  text: Summary of orthologous groups (OGs) for 227 genomes of genus Chlamydia. (CSV
    362 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 2 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 2 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">https://doi.org/10.6084/m9.figshare.9808865.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 2 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">https://doi.org/10.6084/m9.figshare.9808865.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 2 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 2 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 2 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808865.v1">10.6084/m9.figshare.9808865.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:18:09Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808865.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808865.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 2 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9900'
abstract:
- lang: eng
  text: Pan-genome statistics by species. (CSV 3 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 5 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 5 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">https://doi.org/10.6084/m9.figshare.9808886.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 5 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">https://doi.org/10.6084/m9.figshare.9808886.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 5 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 5 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 5 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808886.v1">10.6084/m9.figshare.9808886.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T08:44:49Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808886.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808886.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 5 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '9901'
abstract:
- lang: eng
  text: Clusters of Orthologous Genes (COGs) and corresponding functional categories
    assigned to OGs. (CSV 117 kb)
article_processing_charge: No
author:
- first_name: Olga M.
  full_name: Sigalova, Olga M.
  last_name: Sigalova
- first_name: Andrei V.
  full_name: Chaplin, Andrei V.
  last_name: Chaplin
- first_name: Olga
  full_name: Bochkareva, Olga
  id: C4558D3C-6102-11E9-A62E-F418E6697425
  last_name: Bochkareva
  orcid: 0000-0003-1006-6639
- first_name: Pavel V.
  full_name: Shelyakin, Pavel V.
  last_name: Shelyakin
- first_name: Vsevolod A.
  full_name: Filaretov, Vsevolod A.
  last_name: Filaretov
- first_name: Evgeny E.
  full_name: Akkuratov, Evgeny E.
  last_name: Akkuratov
- first_name: Valentina
  full_name: Burskaia, Valentina
  last_name: Burskaia
- first_name: Mikhail S.
  full_name: Gelfand, Mikhail S.
  last_name: Gelfand
citation:
  ama: Sigalova OM, Chaplin AV, Bochkareva O, et al. Additional file 9 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. 2019. doi:<a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>
  apa: Sigalova, O. M., Chaplin, A. V., Bochkareva, O., Shelyakin, P. V., Filaretov,
    V. A., Akkuratov, E. E., … Gelfand, M. S. (2019). Additional file 9 of Chlamydia
    pan-genomic analysis reveals balance between host adaptation and selective pressure
    to genome reduction. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">https://doi.org/10.6084/m9.figshare.9808907.v1</a>
  chicago: Sigalova, Olga M., Andrei V. Chaplin, Olga Bochkareva, Pavel V. Shelyakin,
    Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia, and Mikhail S.
    Gelfand. “Additional File 9 of Chlamydia Pan-Genomic Analysis Reveals Balance
    between Host Adaptation and Selective Pressure to Genome Reduction.” Springer
    Nature, 2019. <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">https://doi.org/10.6084/m9.figshare.9808907.v1</a>.
  ieee: O. M. Sigalova <i>et al.</i>, “Additional file 9 of Chlamydia pan-genomic
    analysis reveals balance between host adaptation and selective pressure to genome
    reduction.” Springer Nature, 2019.
  ista: Sigalova OM, Chaplin AV, Bochkareva O, Shelyakin PV, Filaretov VA, Akkuratov
    EE, Burskaia V, Gelfand MS. 2019. Additional file 9 of Chlamydia pan-genomic analysis
    reveals balance between host adaptation and selective pressure to genome reduction,
    Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>.
  mla: Sigalova, Olga M., et al. <i>Additional File 9 of Chlamydia Pan-Genomic Analysis
    Reveals Balance between Host Adaptation and Selective Pressure to Genome Reduction</i>.
    Springer Nature, 2019, doi:<a href="https://doi.org/10.6084/m9.figshare.9808907.v1">10.6084/m9.figshare.9808907.v1</a>.
  short: O.M. Sigalova, A.V. Chaplin, O. Bochkareva, P.V. Shelyakin, V.A. Filaretov,
    E.E. Akkuratov, V. Burskaia, M.S. Gelfand, (2019).
date_created: 2021-08-12T10:54:03Z
date_published: 2019-09-12T00:00:00Z
date_updated: 2023-08-30T06:20:22Z
day: '12'
department:
- _id: FyKo
doi: 10.6084/m9.figshare.9808907.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.9808907.v1
month: '09'
oa: 1
oa_version: Published Version
publisher: Springer Nature
related_material:
  record:
  - id: '6898'
    relation: used_in_publication
    status: public
status: public
title: Additional file 9 of Chlamydia pan-genomic analysis reveals balance between
  host adaptation and selective pressure to genome reduction
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2019'
...
---
_id: '10874'
abstract:
- lang: eng
  text: In this article we prove an analogue of a theorem of Lachaud, Ritzenthaler,
    and Zykin, which allows us to connect invariants of binary octics to Siegel modular
    forms of genus 3. We use this connection to show that certain modular functions,
    when restricted to the hyperelliptic locus, assume values whose denominators are
    products of powers of primes of bad reduction for the associated hyperelliptic
    curves. We illustrate our theorem with explicit computations. This work is motivated
    by the study of the values of these modular functions at CM points of the Siegel
    upper half-space, which, if their denominators are known, can be used to effectively
    compute models of (hyperelliptic, in our case) curves with CM.
acknowledgement: "The authors would like to thank the Lorentz Center in Leiden for
  hosting the Women in Numbers Europe 2 workshop and providing a productive and enjoyable
  environment for our initial work on this project. We are grateful to the organizers
  of WIN-E2, Irene Bouw, Rachel Newton and Ekin Ozman, for making this conference
  and this collaboration possible. We\r\nthank Irene Bouw and Christophe Ritzenhaler
  for helpful discussions. Ionica acknowledges support from the Thomas Jefferson Fund
  of the Embassy of France in the United States and the FACE Foundation. Most of Kılıçer’s
  work was carried out during her stay in Universiteit Leiden and Carl von Ossietzky
  Universität Oldenburg. Massierer was supported by the Australian Research Council
  (DP150101689). Vincent is supported by the National Science Foundation under Grant
  No. DMS-1802323 and by the Thomas Jefferson Fund of the Embassy of France in the
  United States and the FACE Foundation. "
article_number: '9'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Sorina
  full_name: Ionica, Sorina
  last_name: Ionica
- first_name: Pınar
  full_name: Kılıçer, Pınar
  last_name: Kılıçer
- first_name: Kristin
  full_name: Lauter, Kristin
  last_name: Lauter
- first_name: Elisa
  full_name: Lorenzo García, Elisa
  last_name: Lorenzo García
- first_name: Maria-Adelina
  full_name: Manzateanu, Maria-Adelina
  id: be8d652e-a908-11ec-82a4-e2867729459c
  last_name: Manzateanu
- first_name: Maike
  full_name: Massierer, Maike
  last_name: Massierer
- first_name: Christelle
  full_name: Vincent, Christelle
  last_name: Vincent
citation:
  ama: Ionica S, Kılıçer P, Lauter K, et al. Modular invariants for genus 3 hyperelliptic
    curves. <i>Research in Number Theory</i>. 2019;5. doi:<a href="https://doi.org/10.1007/s40993-018-0146-6">10.1007/s40993-018-0146-6</a>
  apa: Ionica, S., Kılıçer, P., Lauter, K., Lorenzo García, E., Manzateanu, M.-A.,
    Massierer, M., &#38; Vincent, C. (2019). Modular invariants for genus 3 hyperelliptic
    curves. <i>Research in Number Theory</i>. Springer Nature. <a href="https://doi.org/10.1007/s40993-018-0146-6">https://doi.org/10.1007/s40993-018-0146-6</a>
  chicago: Ionica, Sorina, Pınar Kılıçer, Kristin Lauter, Elisa Lorenzo García, Maria-Adelina
    Manzateanu, Maike Massierer, and Christelle Vincent. “Modular Invariants for Genus
    3 Hyperelliptic Curves.” <i>Research in Number Theory</i>. Springer Nature, 2019.
    <a href="https://doi.org/10.1007/s40993-018-0146-6">https://doi.org/10.1007/s40993-018-0146-6</a>.
  ieee: S. Ionica <i>et al.</i>, “Modular invariants for genus 3 hyperelliptic curves,”
    <i>Research in Number Theory</i>, vol. 5. Springer Nature, 2019.
  ista: Ionica S, Kılıçer P, Lauter K, Lorenzo García E, Manzateanu M-A, Massierer
    M, Vincent C. 2019. Modular invariants for genus 3 hyperelliptic curves. Research
    in Number Theory. 5, 9.
  mla: Ionica, Sorina, et al. “Modular Invariants for Genus 3 Hyperelliptic Curves.”
    <i>Research in Number Theory</i>, vol. 5, 9, Springer Nature, 2019, doi:<a href="https://doi.org/10.1007/s40993-018-0146-6">10.1007/s40993-018-0146-6</a>.
  short: S. Ionica, P. Kılıçer, K. Lauter, E. Lorenzo García, M.-A. Manzateanu, M.
    Massierer, C. Vincent, Research in Number Theory 5 (2019).
date_created: 2022-03-18T12:09:48Z
date_published: 2019-01-02T00:00:00Z
date_updated: 2023-09-05T15:39:31Z
day: '02'
department:
- _id: TiBr
doi: 10.1007/s40993-018-0146-6
external_id:
  arxiv:
  - '1807.08986'
intvolume: '         5'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1807.08986
month: '01'
oa: 1
oa_version: Preprint
publication: Research in Number Theory
publication_identifier:
  eissn:
  - 2363-9555
  issn:
  - 2522-0160
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Modular invariants for genus 3 hyperelliptic curves
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 5
year: '2019'
...
---
_id: '10877'
abstract:
- lang: eng
  text: 'This report presents the results of a friendly competition for formal verification
    of continuous and hybrid systems with piecewise constant dynamics. The friendly
    competition took place as part of the workshop Applied Verification for Continuous
    and Hybrid Systems (ARCH) in 2019. In this third edition, six tools have been
    applied to solve five different benchmark problems in the category for piecewise
    constant dynamics: BACH, Lyse, Hy- COMP, PHAVer/SX, PHAVerLite, and VeriSiMPL.
    Compared to last year, a new tool has participated (HyCOMP) and PHAVerLite has
    replaced PHAVer-lite. The result is a snap- shot of the current landscape of tools
    and the types of benchmarks they are particularly suited for. Due to the diversity
    of problems, we are not ranking tools, yet the presented results probably provide
    the most complete assessment of tools for the safety verification of continuous
    and hybrid systems with piecewise constant dynamics up to this date.'
acknowledgement: "The authors gratefully acknowledge \fnancial support by the European
  Commission project\r\nUnCoVerCPS under grant number 643921. Lei Bu is supported
  by the National Natural Science\r\nFoundation of China (No.61572249)."
alternative_title:
- EPiC Series in Computing
article_processing_charge: No
author:
- first_name: Goran
  full_name: Frehse, Goran
  last_name: Frehse
- first_name: Alessandro
  full_name: Abate, Alessandro
  last_name: Abate
- first_name: Dieky
  full_name: Adzkiya, Dieky
  last_name: Adzkiya
- first_name: Anna
  full_name: Becchi, Anna
  last_name: Becchi
- first_name: Lei
  full_name: Bu, Lei
  last_name: Bu
- first_name: Alessandro
  full_name: Cimatti, Alessandro
  last_name: Cimatti
- first_name: Mirco
  full_name: Giacobbe, Mirco
  id: 3444EA5E-F248-11E8-B48F-1D18A9856A87
  last_name: Giacobbe
  orcid: 0000-0001-8180-0904
- first_name: Alberto
  full_name: Griggio, Alberto
  last_name: Griggio
- first_name: Sergio
  full_name: Mover, Sergio
  last_name: Mover
- first_name: Muhammad Syifa'ul
  full_name: Mufid, Muhammad Syifa'ul
  last_name: Mufid
- first_name: Idriss
  full_name: Riouak, Idriss
  last_name: Riouak
- first_name: Stefano
  full_name: Tonetta, Stefano
  last_name: Tonetta
- first_name: Enea
  full_name: Zaffanella, Enea
  last_name: Zaffanella
citation:
  ama: 'Frehse G, Abate A, Adzkiya D, et al. ARCH-COMP19 Category Report: Hybrid systems
    with piecewise constant dynamics. In: Frehse G, Althoff M, eds. <i>ARCH19. 6th
    International Workshop on Applied Verification of Continuous and Hybrid Systems</i>.
    Vol 61. EasyChair; 2019:1-13. doi:<a href="https://doi.org/10.29007/rjwn">10.29007/rjwn</a>'
  apa: 'Frehse, G., Abate, A., Adzkiya, D., Becchi, A., Bu, L., Cimatti, A., … Zaffanella,
    E. (2019). ARCH-COMP19 Category Report: Hybrid systems with piecewise constant
    dynamics. In G. Frehse &#38; M. Althoff (Eds.), <i>ARCH19. 6th International Workshop
    on Applied Verification of Continuous and Hybrid Systems</i> (Vol. 61, pp. 1–13).
    Montreal, Canada: EasyChair. <a href="https://doi.org/10.29007/rjwn">https://doi.org/10.29007/rjwn</a>'
  chicago: 'Frehse, Goran, Alessandro Abate, Dieky Adzkiya, Anna Becchi, Lei Bu, Alessandro
    Cimatti, Mirco Giacobbe, et al. “ARCH-COMP19 Category Report: Hybrid Systems with
    Piecewise Constant Dynamics.” In <i>ARCH19. 6th International Workshop on Applied
    Verification of Continuous and Hybrid Systems</i>, edited by Goran Frehse and
    Matthias Althoff, 61:1–13. EasyChair, 2019. <a href="https://doi.org/10.29007/rjwn">https://doi.org/10.29007/rjwn</a>.'
  ieee: 'G. Frehse <i>et al.</i>, “ARCH-COMP19 Category Report: Hybrid systems with
    piecewise constant dynamics,” in <i>ARCH19. 6th International Workshop on Applied
    Verification of Continuous and Hybrid Systems</i>, Montreal, Canada, 2019, vol.
    61, pp. 1–13.'
  ista: 'Frehse G, Abate A, Adzkiya D, Becchi A, Bu L, Cimatti A, Giacobbe M, Griggio
    A, Mover S, Mufid MS, Riouak I, Tonetta S, Zaffanella E. 2019. ARCH-COMP19 Category
    Report: Hybrid systems with piecewise constant dynamics. ARCH19. 6th International
    Workshop on Applied Verification of Continuous and Hybrid Systems. ARCH: International
    Workshop on Applied Verification on Continuous and Hybrid Systems, EPiC Series
    in Computing, vol. 61, 1–13.'
  mla: 'Frehse, Goran, et al. “ARCH-COMP19 Category Report: Hybrid Systems with Piecewise
    Constant Dynamics.” <i>ARCH19. 6th International Workshop on Applied Verification
    of Continuous and Hybrid Systems</i>, edited by Goran Frehse and Matthias Althoff,
    vol. 61, EasyChair, 2019, pp. 1–13, doi:<a href="https://doi.org/10.29007/rjwn">10.29007/rjwn</a>.'
  short: G. Frehse, A. Abate, D. Adzkiya, A. Becchi, L. Bu, A. Cimatti, M. Giacobbe,
    A. Griggio, S. Mover, M.S. Mufid, I. Riouak, S. Tonetta, E. Zaffanella, in:, G.
    Frehse, M. Althoff (Eds.), ARCH19. 6th International Workshop on Applied Verification
    of Continuous and Hybrid Systems, EasyChair, 2019, pp. 1–13.
conference:
  end_date: 2019-04-15
  location: Montreal, Canada
  name: 'ARCH: International Workshop on Applied Verification on Continuous and Hybrid
    Systems'
  start_date: 2019-04-15
date_created: 2022-03-18T12:29:23Z
date_published: 2019-05-25T00:00:00Z
date_updated: 2022-05-17T07:09:47Z
day: '25'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.29007/rjwn
editor:
- first_name: Goran
  full_name: Frehse, Goran
  last_name: Frehse
- first_name: Matthias
  full_name: Althoff, Matthias
  last_name: Althoff
file:
- access_level: open_access
  checksum: 4b92e333db7b4e2349501a804dfede69
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-17T06:55:49Z
  date_updated: 2022-05-17T06:55:49Z
  file_id: '11391'
  file_name: 2019_EPiCs_Frehse.pdf
  file_size: 346415
  relation: main_file
  success: 1
file_date_updated: 2022-05-17T06:55:49Z
has_accepted_license: '1'
intvolume: '        61'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1-13
publication: ARCH19. 6th International Workshop on Applied Verification of Continuous
  and Hybrid Systems
publication_identifier:
  issn:
  - 2398-7340
publication_status: published
publisher: EasyChair
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'ARCH-COMP19 Category Report: Hybrid systems with piecewise constant dynamics'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 61
year: '2019'
...
---
_id: '10878'
abstract:
- lang: eng
  text: Starting from a microscopic model for a system of neurons evolving in time
    which individually follow a stochastic integrate-and-fire type model, we study
    a mean-field limit of the system. Our model is described by a system of SDEs with
    discontinuous coefficients for the action potential of each neuron and takes into
    account the (random) spatial configuration of neurons allowing the interaction
    to depend on it. In the limit as the number of particles tends to infinity, we
    obtain a nonlinear Fokker-Planck type PDE in two variables, with derivatives only
    with respect to one variable and discontinuous coefficients. We also study strong
    well-posedness of the system of SDEs and prove the existence and uniqueness of
    a weak measure-valued solution to the PDE, obtained as the limit of the laws of
    the empirical measures for the system of particles.
acknowledgement: "The second author has been partially supported by INdAM through
  the GNAMPA Research\r\nProject (2017) “Sistemi stocastici singolari: buona posizione
  e problemi di controllo”. The third\r\nauthor was partly funded by the Austrian
  Science Fund (FWF) project F 65."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Franco
  full_name: Flandoli, Franco
  last_name: Flandoli
- first_name: Enrico
  full_name: Priola, Enrico
  last_name: Priola
- first_name: Giovanni A
  full_name: Zanco, Giovanni A
  id: 47491882-F248-11E8-B48F-1D18A9856A87
  last_name: Zanco
citation:
  ama: Flandoli F, Priola E, Zanco GA. A mean-field model with discontinuous coefficients
    for neurons with spatial interaction. <i>Discrete and Continuous Dynamical Systems</i>.
    2019;39(6):3037-3067. doi:<a href="https://doi.org/10.3934/dcds.2019126">10.3934/dcds.2019126</a>
  apa: Flandoli, F., Priola, E., &#38; Zanco, G. A. (2019). A mean-field model with
    discontinuous coefficients for neurons with spatial interaction. <i>Discrete and
    Continuous Dynamical Systems</i>. American Institute of Mathematical Sciences.
    <a href="https://doi.org/10.3934/dcds.2019126">https://doi.org/10.3934/dcds.2019126</a>
  chicago: Flandoli, Franco, Enrico Priola, and Giovanni A Zanco. “A Mean-Field Model
    with Discontinuous Coefficients for Neurons with Spatial Interaction.” <i>Discrete
    and Continuous Dynamical Systems</i>. American Institute of Mathematical Sciences,
    2019. <a href="https://doi.org/10.3934/dcds.2019126">https://doi.org/10.3934/dcds.2019126</a>.
  ieee: F. Flandoli, E. Priola, and G. A. Zanco, “A mean-field model with discontinuous
    coefficients for neurons with spatial interaction,” <i>Discrete and Continuous
    Dynamical Systems</i>, vol. 39, no. 6. American Institute of Mathematical Sciences,
    pp. 3037–3067, 2019.
  ista: Flandoli F, Priola E, Zanco GA. 2019. A mean-field model with discontinuous
    coefficients for neurons with spatial interaction. Discrete and Continuous Dynamical
    Systems. 39(6), 3037–3067.
  mla: Flandoli, Franco, et al. “A Mean-Field Model with Discontinuous Coefficients
    for Neurons with Spatial Interaction.” <i>Discrete and Continuous Dynamical Systems</i>,
    vol. 39, no. 6, American Institute of Mathematical Sciences, 2019, pp. 3037–67,
    doi:<a href="https://doi.org/10.3934/dcds.2019126">10.3934/dcds.2019126</a>.
  short: F. Flandoli, E. Priola, G.A. Zanco, Discrete and Continuous Dynamical Systems
    39 (2019) 3037–3067.
date_created: 2022-03-18T12:33:34Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2023-09-08T11:34:45Z
day: '01'
department:
- _id: JaMa
doi: 10.3934/dcds.2019126
external_id:
  arxiv:
  - '1708.04156'
  isi:
  - '000459954800003'
intvolume: '        39'
isi: 1
issue: '6'
keyword:
- Applied Mathematics
- Discrete Mathematics and Combinatorics
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1708.04156
month: '06'
oa: 1
oa_version: Preprint
page: 3037-3067
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
  grant_number: F6504
  name: Taming Complexity in Partial Differential Systems
publication: Discrete and Continuous Dynamical Systems
publication_identifier:
  issn:
  - 1553-5231
publication_status: published
publisher: American Institute of Mathematical Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: A mean-field model with discontinuous coefficients for neurons with spatial
  interaction
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 39
year: '2019'
...
---
_id: '10879'
abstract:
- lang: eng
  text: We study effects of a bounded and compactly supported perturbation on multidimensional
    continuum random Schrödinger operators in the region of complete localisation.
    Our main emphasis is on Anderson orthogonality for random Schrödinger operators.
    Among others, we prove that Anderson orthogonality does occur for Fermi energies
    in the region of complete localisation with a non-zero probability. This partially
    confirms recent non-rigorous findings [V. Khemani et al., Nature Phys. 11 (2015),
    560–565]. The spectral shift function plays an important role in our analysis
    of Anderson orthogonality. We identify it with the index of the corresponding
    pair of spectral projections and explore the consequences thereof. All our results
    rely on the main technical estimate of this paper which guarantees separate exponential
    decay of the disorder-averaged Schatten p-norm of χa(f(H)−f(Hτ))χb in a and b.
    Here, Hτ is a perturbation of the random Schrödinger operator H, χa is the multiplication
    operator corresponding to the indicator function of a unit cube centred about
    a∈Rd, and f is in a suitable class of functions of bounded variation with distributional
    derivative supported in the region of complete localisation for H.
acknowledgement: M.G. was supported by the DFG under grant GE 2871/1-1.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Adrian M
  full_name: Dietlein, Adrian M
  id: 317CB464-F248-11E8-B48F-1D18A9856A87
  last_name: Dietlein
- first_name: Martin
  full_name: Gebert, Martin
  last_name: Gebert
- first_name: Peter
  full_name: Müller, Peter
  last_name: Müller
citation:
  ama: Dietlein AM, Gebert M, Müller P. Perturbations of continuum random Schrödinger
    operators with applications to Anderson orthogonality and the spectral shift function.
    <i>Journal of Spectral Theory</i>. 2019;9(3):921-965. doi:<a href="https://doi.org/10.4171/jst/267">10.4171/jst/267</a>
  apa: Dietlein, A. M., Gebert, M., &#38; Müller, P. (2019). Perturbations of continuum
    random Schrödinger operators with applications to Anderson orthogonality and the
    spectral shift function. <i>Journal of Spectral Theory</i>. European Mathematical
    Society Publishing House. <a href="https://doi.org/10.4171/jst/267">https://doi.org/10.4171/jst/267</a>
  chicago: Dietlein, Adrian M, Martin Gebert, and Peter Müller. “Perturbations of
    Continuum Random Schrödinger Operators with Applications to Anderson Orthogonality
    and the Spectral Shift Function.” <i>Journal of Spectral Theory</i>. European
    Mathematical Society Publishing House, 2019. <a href="https://doi.org/10.4171/jst/267">https://doi.org/10.4171/jst/267</a>.
  ieee: A. M. Dietlein, M. Gebert, and P. Müller, “Perturbations of continuum random
    Schrödinger operators with applications to Anderson orthogonality and the spectral
    shift function,” <i>Journal of Spectral Theory</i>, vol. 9, no. 3. European Mathematical
    Society Publishing House, pp. 921–965, 2019.
  ista: Dietlein AM, Gebert M, Müller P. 2019. Perturbations of continuum random Schrödinger
    operators with applications to Anderson orthogonality and the spectral shift function.
    Journal of Spectral Theory. 9(3), 921–965.
  mla: Dietlein, Adrian M., et al. “Perturbations of Continuum Random Schrödinger
    Operators with Applications to Anderson Orthogonality and the Spectral Shift Function.”
    <i>Journal of Spectral Theory</i>, vol. 9, no. 3, European Mathematical Society
    Publishing House, 2019, pp. 921–65, doi:<a href="https://doi.org/10.4171/jst/267">10.4171/jst/267</a>.
  short: A.M. Dietlein, M. Gebert, P. Müller, Journal of Spectral Theory 9 (2019)
    921–965.
date_created: 2022-03-18T12:36:42Z
date_published: 2019-03-01T00:00:00Z
date_updated: 2023-09-08T11:35:31Z
day: '01'
department:
- _id: LaEr
doi: 10.4171/jst/267
external_id:
  arxiv:
  - '1701.02956'
  isi:
  - '000484709400006'
intvolume: '         9'
isi: 1
issue: '3'
keyword:
- Random Schrödinger operators
- spectral shift function
- Anderson orthogonality
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1701.02956
month: '03'
oa: 1
oa_version: Preprint
page: 921-965
publication: Journal of Spectral Theory
publication_identifier:
  issn:
  - 1664-039X
publication_status: published
publisher: European Mathematical Society Publishing House
quality_controlled: '1'
scopus_import: '1'
status: public
title: Perturbations of continuum random Schrödinger operators with applications to
  Anderson orthogonality and the spectral shift function
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2019'
...
---
_id: '11222'
acknowledgement: This work was supported by the ERC and EU Horizon 2020 (ERC 692692;
  MSC-IF 708497) and FWF Z 312-B27 Wittgenstein award; W 1205-B09).
article_number: A3.27
article_processing_charge: No
author:
- first_name: Olena
  full_name: Kim, Olena
  id: 3F8ABDDA-F248-11E8-B48F-1D18A9856A87
  last_name: Kim
- first_name: Carolina
  full_name: Borges Merjane, Carolina
  id: 4305C450-F248-11E8-B48F-1D18A9856A87
  last_name: Borges Merjane
  orcid: 0000-0003-0005-401X
- first_name: Peter M
  full_name: Jonas, Peter M
  id: 353C1B58-F248-11E8-B48F-1D18A9856A87
  last_name: Jonas
  orcid: 0000-0001-5001-4804
citation:
  ama: 'Kim O, Borges Merjane C, Jonas PM. Functional analysis of the docked vesicle
    pool in hippocampal mossy fiber terminals by electron microscopy. In: <i>Intrinsic
    Activity</i>. Vol 7. Austrian Pharmacological Society; 2019. doi:<a href="https://doi.org/10.25006/ia.7.s1-a3.27">10.25006/ia.7.s1-a3.27</a>'
  apa: 'Kim, O., Borges Merjane, C., &#38; Jonas, P. M. (2019). Functional analysis
    of the docked vesicle pool in hippocampal mossy fiber terminals by electron microscopy.
    In <i>Intrinsic Activity</i> (Vol. 7). Innsbruck, Austria: Austrian Pharmacological
    Society. <a href="https://doi.org/10.25006/ia.7.s1-a3.27">https://doi.org/10.25006/ia.7.s1-a3.27</a>'
  chicago: Kim, Olena, Carolina Borges Merjane, and Peter M Jonas. “Functional Analysis
    of the Docked Vesicle Pool in Hippocampal Mossy Fiber Terminals by Electron Microscopy.”
    In <i>Intrinsic Activity</i>, Vol. 7. Austrian Pharmacological Society, 2019.
    <a href="https://doi.org/10.25006/ia.7.s1-a3.27">https://doi.org/10.25006/ia.7.s1-a3.27</a>.
  ieee: O. Kim, C. Borges Merjane, and P. M. Jonas, “Functional analysis of the docked
    vesicle pool in hippocampal mossy fiber terminals by electron microscopy,” in
    <i>Intrinsic Activity</i>, Innsbruck, Austria, 2019, vol. 7, no. Suppl. 1.
  ista: 'Kim O, Borges Merjane C, Jonas PM. 2019. Functional analysis of the docked
    vesicle pool in hippocampal mossy fiber terminals by electron microscopy. Intrinsic
    Activity. ANA: Austrian Neuroscience Association ; APHAR: Austrian Pharmacological
    Society vol. 7, A3.27.'
  mla: Kim, Olena, et al. “Functional Analysis of the Docked Vesicle Pool in Hippocampal
    Mossy Fiber Terminals by Electron Microscopy.” <i>Intrinsic Activity</i>, vol.
    7, no. Suppl. 1, A3.27, Austrian Pharmacological Society, 2019, doi:<a href="https://doi.org/10.25006/ia.7.s1-a3.27">10.25006/ia.7.s1-a3.27</a>.
  short: O. Kim, C. Borges Merjane, P.M. Jonas, in:, Intrinsic Activity, Austrian
    Pharmacological Society, 2019.
conference:
  end_date: 2019-09-27
  location: Innsbruck, Austria
  name: 'ANA: Austrian Neuroscience Association ; APHAR: Austrian Pharmacological
    Society'
  start_date: 2019-09-25
date_created: 2022-04-20T15:06:05Z
date_published: 2019-09-11T00:00:00Z
date_updated: 2024-03-25T23:30:04Z
day: '11'
department:
- _id: PeJo
doi: 10.25006/ia.7.s1-a3.27
ec_funded: 1
intvolume: '         7'
issue: Suppl. 1
keyword:
- hippocampus
- mossy fibers
- readily releasable pool
- electron microscopy
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.intrinsicactivity.org/2019/7/S1/A3.27/
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '692692'
  name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 25BAF7B2-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '708497'
  name: Presynaptic calcium channels distribution and impact on coupling at the hippocampal
    mossy fiber synapse
- _id: 25C3DBB6-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: W01205
  name: Zellkommunikation in Gesundheit und Krankheit
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z00312
  name: The Wittgenstein Prize
publication: Intrinsic Activity
publication_identifier:
  issn:
  - 2309-8503
publication_status: published
publisher: Austrian Pharmacological Society
quality_controlled: '1'
related_material:
  record:
  - id: '11196'
    relation: dissertation_contains
    status: public
status: public
title: Functional analysis of the docked vesicle pool in hippocampal mossy fiber terminals
  by electron microscopy
type: conference_abstract
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 7
year: '2019'
...
---
_id: '27'
abstract:
- lang: eng
  text: The cerebral cortex is composed of a large variety of distinct cell-types
    including projection neurons, interneurons and glial cells which emerge from distinct
    neural stem cell (NSC) lineages. The vast majority of cortical projection neurons
    and certain classes of glial cells are generated by radial glial progenitor cells
    (RGPs) in a highly orchestrated manner. Recent studies employing single cell analysis
    and clonal lineage tracing suggest that NSC and RGP lineage progression are regulated
    in a profound deterministic manner. In this review we focus on recent advances
    based mainly on correlative phenotypic data emerging from functional genetic studies
    in mice. We establish hypotheses to test in future research and outline a conceptual
    framework how epigenetic cues modulate the generation of cell-type diversity during
    cortical development. This article is protected by copyright. All rights reserved.
acknowledgement: " This work was supported by IST Austria institutional funds; NÖ
  Forschung und Bildung \r\nn[f+b]   (C13-002)   to   SH;   a   program   grant   from
  \  the   Human   Frontiers   Science   Program (RGP0053/2014)  to SH;  the  People
  \ Programme  (Marie  Curie  Actions)  of  the  European  Union’s Seventh Framework
  Programme (FP7/2007-2013) under REA grant agreement No 618444 to SH, and the  European
  \ Research  Council  (ERC)  under  the  European  Union’s  Horizon  2020  research
  \ and innovation programme (grant agreement No 725780 LinPro)to SH.\r\n"
article_processing_charge: Yes (via OA deal)
article_type: review
author:
- first_name: Nicole
  full_name: Amberg, Nicole
  id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87
  last_name: Amberg
  orcid: 0000-0002-3183-8207
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
  orcid: 0000-0002-7903-3010
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Amberg N, Laukoter S, Hippenmeyer S. Epigenetic cues modulating the generation
    of cell type diversity in the cerebral cortex. <i>Journal of Neurochemistry</i>.
    2019;149(1):12-26. doi:<a href="https://doi.org/10.1111/jnc.14601">10.1111/jnc.14601</a>
  apa: Amberg, N., Laukoter, S., &#38; Hippenmeyer, S. (2019). Epigenetic cues modulating
    the generation of cell type diversity in the cerebral cortex. <i>Journal of Neurochemistry</i>.
    Wiley. <a href="https://doi.org/10.1111/jnc.14601">https://doi.org/10.1111/jnc.14601</a>
  chicago: Amberg, Nicole, Susanne Laukoter, and Simon Hippenmeyer. “Epigenetic Cues
    Modulating the Generation of Cell Type Diversity in the Cerebral Cortex.” <i>Journal
    of Neurochemistry</i>. Wiley, 2019. <a href="https://doi.org/10.1111/jnc.14601">https://doi.org/10.1111/jnc.14601</a>.
  ieee: N. Amberg, S. Laukoter, and S. Hippenmeyer, “Epigenetic cues modulating the
    generation of cell type diversity in the cerebral cortex,” <i>Journal of Neurochemistry</i>,
    vol. 149, no. 1. Wiley, pp. 12–26, 2019.
  ista: Amberg N, Laukoter S, Hippenmeyer S. 2019. Epigenetic cues modulating the
    generation of cell type diversity in the cerebral cortex. Journal of Neurochemistry.
    149(1), 12–26.
  mla: Amberg, Nicole, et al. “Epigenetic Cues Modulating the Generation of Cell Type
    Diversity in the Cerebral Cortex.” <i>Journal of Neurochemistry</i>, vol. 149,
    no. 1, Wiley, 2019, pp. 12–26, doi:<a href="https://doi.org/10.1111/jnc.14601">10.1111/jnc.14601</a>.
  short: N. Amberg, S. Laukoter, S. Hippenmeyer, Journal of Neurochemistry 149 (2019)
    12–26.
date_created: 2018-12-11T11:44:14Z
date_published: 2019-04-01T00:00:00Z
date_updated: 2023-09-11T13:40:26Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1111/jnc.14601
ec_funded: 1
external_id:
  isi:
  - '000462680200002'
file:
- access_level: open_access
  checksum: db027721a95d36f5de36aadcd0bdf7e6
  content_type: application/pdf
  creator: kschuh
  date_created: 2020-01-07T13:35:52Z
  date_updated: 2020-07-14T12:45:45Z
  file_id: '7239'
  file_name: 2019_Wiley_Amberg.pdf
  file_size: 889709
  relation: main_file
file_date_updated: 2020-07-14T12:45:45Z
has_accepted_license: '1'
intvolume: '       149'
isi: 1
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 12-26
project:
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
- _id: 25D7962E-B435-11E9-9278-68D0E5697425
  grant_number: RGP0053/2014
  name: Quantitative Structure-Function Analysis of Cerebral Cortex Assembly at Clonal
    Level
- _id: 25D61E48-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '618444'
  name: Molecular Mechanisms of Cerebral Cortex Development
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Journal of Neurochemistry
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Epigenetic cues modulating the generation of cell type diversity in the cerebral
  cortex
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 149
year: '2019'
...
---
_id: '301'
abstract:
- lang: eng
  text: A representation formula for solutions of stochastic partial differential
    equations with Dirichlet boundary conditions is proved. The scope of our setting
    is wide enough to cover the general situation when the backward characteristics
    that appear in the usual formulation are not even defined in the Itô sense.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Mate
  full_name: Gerencser, Mate
  id: 44ECEDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Gerencser
- first_name: István
  full_name: Gyöngy, István
  last_name: Gyöngy
citation:
  ama: Gerencser M, Gyöngy I. A Feynman–Kac formula for stochastic Dirichlet problems.
    <i>Stochastic Processes and their Applications</i>. 2019;129(3):995-1012. doi:<a
    href="https://doi.org/10.1016/j.spa.2018.04.003">10.1016/j.spa.2018.04.003</a>
  apa: Gerencser, M., &#38; Gyöngy, I. (2019). A Feynman–Kac formula for stochastic
    Dirichlet problems. <i>Stochastic Processes and Their Applications</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.spa.2018.04.003">https://doi.org/10.1016/j.spa.2018.04.003</a>
  chicago: Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic
    Dirichlet Problems.” <i>Stochastic Processes and Their Applications</i>. Elsevier,
    2019. <a href="https://doi.org/10.1016/j.spa.2018.04.003">https://doi.org/10.1016/j.spa.2018.04.003</a>.
  ieee: M. Gerencser and I. Gyöngy, “A Feynman–Kac formula for stochastic Dirichlet
    problems,” <i>Stochastic Processes and their Applications</i>, vol. 129, no. 3.
    Elsevier, pp. 995–1012, 2019.
  ista: Gerencser M, Gyöngy I. 2019. A Feynman–Kac formula for stochastic Dirichlet
    problems. Stochastic Processes and their Applications. 129(3), 995–1012.
  mla: Gerencser, Mate, and István Gyöngy. “A Feynman–Kac Formula for Stochastic Dirichlet
    Problems.” <i>Stochastic Processes and Their Applications</i>, vol. 129, no. 3,
    Elsevier, 2019, pp. 995–1012, doi:<a href="https://doi.org/10.1016/j.spa.2018.04.003">10.1016/j.spa.2018.04.003</a>.
  short: M. Gerencser, I. Gyöngy, Stochastic Processes and Their Applications 129
    (2019) 995–1012.
date_created: 2018-12-11T11:45:42Z
date_published: 2019-03-01T00:00:00Z
date_updated: 2023-08-24T14:20:49Z
day: '01'
department:
- _id: JaMa
doi: 10.1016/j.spa.2018.04.003
external_id:
  arxiv:
  - '1611.04177'
  isi:
  - '000458945300012'
intvolume: '       129'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1611.04177
month: '03'
oa: 1
oa_version: Preprint
page: 995-1012
publication: Stochastic Processes and their Applications
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: A Feynman–Kac formula for stochastic Dirichlet problems
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 129
year: '2019'
...
---
_id: '319'
abstract:
- lang: eng
  text: We study spaces of modelled distributions with singular behaviour near the
    boundary of a domain that, in the context of the theory of regularity structures,
    allow one to give robust solution theories for singular stochastic PDEs with boundary
    conditions. The calculus of modelled distributions established in Hairer (Invent
    Math 198(2):269–504, 2014. https://doi.org/10.1007/s00222-014-0505-4) is extended
    to this setting. We formulate and solve fixed point problems in these spaces with
    a class of kernels that is sufficiently large to cover in particular the Dirichlet
    and Neumann heat kernels. These results are then used to provide solution theories
    for the KPZ equation with Dirichlet and Neumann boundary conditions and for the
    2D generalised parabolic Anderson model with Dirichlet boundary conditions. In
    the case of the KPZ equation with Neumann boundary conditions, we show that, depending
    on the class of mollifiers one considers, a “boundary renormalisation” takes place.
    In other words, there are situations in which a certain boundary condition is
    applied to an approximation to the KPZ equation, but the limiting process is the
    Hopf–Cole solution to the KPZ equation with a different boundary condition.
acknowledgement: "MG thanks the support of the LMS Postdoctoral Mobility Grant.\r\n\r\n"
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Mate
  full_name: Gerencser, Mate
  id: 44ECEDF2-F248-11E8-B48F-1D18A9856A87
  last_name: Gerencser
- first_name: Martin
  full_name: Hairer, Martin
  last_name: Hairer
citation:
  ama: Gerencser M, Hairer M. Singular SPDEs in domains with boundaries. <i>Probability
    Theory and Related Fields</i>. 2019;173(3-4):697–758. doi:<a href="https://doi.org/10.1007/s00440-018-0841-1">10.1007/s00440-018-0841-1</a>
  apa: Gerencser, M., &#38; Hairer, M. (2019). Singular SPDEs in domains with boundaries.
    <i>Probability Theory and Related Fields</i>. Springer. <a href="https://doi.org/10.1007/s00440-018-0841-1">https://doi.org/10.1007/s00440-018-0841-1</a>
  chicago: Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.”
    <i>Probability Theory and Related Fields</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00440-018-0841-1">https://doi.org/10.1007/s00440-018-0841-1</a>.
  ieee: M. Gerencser and M. Hairer, “Singular SPDEs in domains with boundaries,” <i>Probability
    Theory and Related Fields</i>, vol. 173, no. 3–4. Springer, pp. 697–758, 2019.
  ista: Gerencser M, Hairer M. 2019. Singular SPDEs in domains with boundaries. Probability
    Theory and Related Fields. 173(3–4), 697–758.
  mla: Gerencser, Mate, and Martin Hairer. “Singular SPDEs in Domains with Boundaries.”
    <i>Probability Theory and Related Fields</i>, vol. 173, no. 3–4, Springer, 2019,
    pp. 697–758, doi:<a href="https://doi.org/10.1007/s00440-018-0841-1">10.1007/s00440-018-0841-1</a>.
  short: M. Gerencser, M. Hairer, Probability Theory and Related Fields 173 (2019)
    697–758.
date_created: 2018-12-11T11:45:48Z
date_published: 2019-04-01T00:00:00Z
date_updated: 2023-08-24T14:38:32Z
day: '01'
ddc:
- '510'
department:
- _id: JaMa
doi: 10.1007/s00440-018-0841-1
external_id:
  isi:
  - '000463613800001'
file:
- access_level: open_access
  checksum: 288d16ef7291242f485a9660979486e3
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:25:24Z
  date_updated: 2020-07-14T12:46:03Z
  file_id: '5722'
  file_name: 2018_ProbTheory_Gerencser.pdf
  file_size: 893182
  relation: main_file
file_date_updated: 2020-07-14T12:46:03Z
has_accepted_license: '1'
intvolume: '       173'
isi: 1
issue: 3-4
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 697–758
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Probability Theory and Related Fields
publication_identifier:
  eissn:
  - '14322064'
  issn:
  - '01788051'
publication_status: published
publisher: Springer
publist_id: '7546'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Singular SPDEs in domains with boundaries
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 173
year: '2019'
...
---
_id: '405'
abstract:
- lang: eng
  text: We investigate the quantum Jensen divergences from the viewpoint of joint
    convexity. It turns out that the set of the functions which generate jointly convex
    quantum Jensen divergences on positive matrices coincides with the Matrix Entropy
    Class which has been introduced by Chen and Tropp quite recently.
acknowledgement: The author was supported by the ISTFELLOW program of the Institute
  of Science and Technology Austria (project code IC1027FELL01) and partially supported
  by the Hungarian National Research, Development and Innovation Office – NKFIH (grant
  no. K124152)
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Daniel
  full_name: Virosztek, Daniel
  id: 48DB45DA-F248-11E8-B48F-1D18A9856A87
  last_name: Virosztek
  orcid: 0000-0003-1109-5511
citation:
  ama: Virosztek D. Jointly convex quantum Jensen divergences. <i>Linear Algebra and
    Its Applications</i>. 2019;576:67-78. doi:<a href="https://doi.org/10.1016/j.laa.2018.03.002">10.1016/j.laa.2018.03.002</a>
  apa: Virosztek, D. (2019). Jointly convex quantum Jensen divergences. <i>Linear
    Algebra and Its Applications</i>. Elsevier. <a href="https://doi.org/10.1016/j.laa.2018.03.002">https://doi.org/10.1016/j.laa.2018.03.002</a>
  chicago: Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear
    Algebra and Its Applications</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.laa.2018.03.002">https://doi.org/10.1016/j.laa.2018.03.002</a>.
  ieee: D. Virosztek, “Jointly convex quantum Jensen divergences,” <i>Linear Algebra
    and Its Applications</i>, vol. 576. Elsevier, pp. 67–78, 2019.
  ista: Virosztek D. 2019. Jointly convex quantum Jensen divergences. Linear Algebra
    and Its Applications. 576, 67–78.
  mla: Virosztek, Daniel. “Jointly Convex Quantum Jensen Divergences.” <i>Linear Algebra
    and Its Applications</i>, vol. 576, Elsevier, 2019, pp. 67–78, doi:<a href="https://doi.org/10.1016/j.laa.2018.03.002">10.1016/j.laa.2018.03.002</a>.
  short: D. Virosztek, Linear Algebra and Its Applications 576 (2019) 67–78.
date_created: 2018-12-11T11:46:17Z
date_published: 2019-09-01T00:00:00Z
date_updated: 2023-08-24T14:31:47Z
day: '01'
department:
- _id: LaEr
doi: 10.1016/j.laa.2018.03.002
ec_funded: 1
external_id:
  arxiv:
  - '1712.05324'
  isi:
  - '000470955300005'
intvolume: '       576'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1712.05324
month: '09'
oa: 1
oa_version: Preprint
page: 67-78
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Linear Algebra and Its Applications
publication_status: published
publisher: Elsevier
publist_id: '7424'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Jointly convex quantum Jensen divergences
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 576
year: '2019'
...
---
_id: '429'
abstract:
- lang: eng
  text: We consider real symmetric or complex hermitian random matrices with correlated
    entries. We prove local laws for the resolvent and universality of the local eigenvalue
    statistics in the bulk of the spectrum. The correlations have fast decay but are
    otherwise of general form. The key novelty is the detailed stability analysis
    of the corresponding matrix valued Dyson equation whose solution is the deterministic
    limit of the resolvent.
acknowledgement: "Open access funding provided by Institute of Science and Technology
  (IST Austria).\r\n"
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Oskari H
  full_name: Ajanki, Oskari H
  id: 36F2FB7E-F248-11E8-B48F-1D18A9856A87
  last_name: Ajanki
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Torben H
  full_name: Krüger, Torben H
  id: 3020C786-F248-11E8-B48F-1D18A9856A87
  last_name: Krüger
  orcid: 0000-0002-4821-3297
citation:
  ama: Ajanki OH, Erdös L, Krüger TH. Stability of the matrix Dyson equation and random
    matrices with correlations. <i>Probability Theory and Related Fields</i>. 2019;173(1-2):293–373.
    doi:<a href="https://doi.org/10.1007/s00440-018-0835-z">10.1007/s00440-018-0835-z</a>
  apa: Ajanki, O. H., Erdös, L., &#38; Krüger, T. H. (2019). Stability of the matrix
    Dyson equation and random matrices with correlations. <i>Probability Theory and
    Related Fields</i>. Springer. <a href="https://doi.org/10.1007/s00440-018-0835-z">https://doi.org/10.1007/s00440-018-0835-z</a>
  chicago: Ajanki, Oskari H, László Erdös, and Torben H Krüger. “Stability of the
    Matrix Dyson Equation and Random Matrices with Correlations.” <i>Probability Theory
    and Related Fields</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00440-018-0835-z">https://doi.org/10.1007/s00440-018-0835-z</a>.
  ieee: O. H. Ajanki, L. Erdös, and T. H. Krüger, “Stability of the matrix Dyson equation
    and random matrices with correlations,” <i>Probability Theory and Related Fields</i>,
    vol. 173, no. 1–2. Springer, pp. 293–373, 2019.
  ista: Ajanki OH, Erdös L, Krüger TH. 2019. Stability of the matrix Dyson equation
    and random matrices with correlations. Probability Theory and Related Fields.
    173(1–2), 293–373.
  mla: Ajanki, Oskari H., et al. “Stability of the Matrix Dyson Equation and Random
    Matrices with Correlations.” <i>Probability Theory and Related Fields</i>, vol.
    173, no. 1–2, Springer, 2019, pp. 293–373, doi:<a href="https://doi.org/10.1007/s00440-018-0835-z">10.1007/s00440-018-0835-z</a>.
  short: O.H. Ajanki, L. Erdös, T.H. Krüger, Probability Theory and Related Fields
    173 (2019) 293–373.
date_created: 2018-12-11T11:46:25Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2023-08-24T14:39:00Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.1007/s00440-018-0835-z
ec_funded: 1
external_id:
  isi:
  - '000459396500007'
file:
- access_level: open_access
  checksum: f9354fa5c71f9edd17132588f0dc7d01
  content_type: application/pdf
  creator: dernst
  date_created: 2018-12-17T16:12:08Z
  date_updated: 2020-07-14T12:46:26Z
  file_id: '5720'
  file_name: 2018_ProbTheory_Ajanki.pdf
  file_size: 1201840
  relation: main_file
file_date_updated: 2020-07-14T12:46:26Z
has_accepted_license: '1'
intvolume: '       173'
isi: 1
issue: 1-2
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 293–373
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Probability Theory and Related Fields
publication_identifier:
  eissn:
  - '14322064'
  issn:
  - '01788051'
publication_status: published
publisher: Springer
publist_id: '7394'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stability of the matrix Dyson equation and random matrices with correlations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 173
year: '2019'
...
---
_id: '439'
abstract:
- lang: eng
  text: "We count points over a finite field on wild character varieties,of Riemann
    surfaces for singularities with regular semisimple leading term. The new feature
    in our counting formulas is the appearance of characters of Yokonuma–Hecke algebras.
    Our result leads to the conjecture that the mixed Hodge polynomials of these character
    varieties agree with previously conjectured perverse Hodge polynomials of certain
    twisted parabolic Higgs moduli spaces, indicating the\r\npossibility of a P =
    W conjecture for a suitable wild Hitchin system."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tamas
  full_name: Hausel, Tamas
  id: 4A0666D8-F248-11E8-B48F-1D18A9856A87
  last_name: Hausel
- first_name: Martin
  full_name: Mereb, Martin
  id: 43D735EE-F248-11E8-B48F-1D18A9856A87
  last_name: Mereb
- first_name: Michael
  full_name: Wong, Michael
  last_name: Wong
citation:
  ama: Hausel T, Mereb M, Wong M. Arithmetic and representation theory of wild character
    varieties. <i>Journal of the European Mathematical Society</i>. 2019;21(10):2995-3052.
    doi:<a href="https://doi.org/10.4171/JEMS/896">10.4171/JEMS/896</a>
  apa: Hausel, T., Mereb, M., &#38; Wong, M. (2019). Arithmetic and representation
    theory of wild character varieties. <i>Journal of the European Mathematical Society</i>.
    European Mathematical Society. <a href="https://doi.org/10.4171/JEMS/896">https://doi.org/10.4171/JEMS/896</a>
  chicago: Hausel, Tamás, Martin Mereb, and Michael Wong. “Arithmetic and Representation
    Theory of Wild Character Varieties.” <i>Journal of the European Mathematical Society</i>.
    European Mathematical Society, 2019. <a href="https://doi.org/10.4171/JEMS/896">https://doi.org/10.4171/JEMS/896</a>.
  ieee: T. Hausel, M. Mereb, and M. Wong, “Arithmetic and representation theory of
    wild character varieties,” <i>Journal of the European Mathematical Society</i>,
    vol. 21, no. 10. European Mathematical Society, pp. 2995–3052, 2019.
  ista: Hausel T, Mereb M, Wong M. 2019. Arithmetic and representation theory of wild
    character varieties. Journal of the European Mathematical Society. 21(10), 2995–3052.
  mla: Hausel, Tamás, et al. “Arithmetic and Representation Theory of Wild Character
    Varieties.” <i>Journal of the European Mathematical Society</i>, vol. 21, no.
    10, European Mathematical Society, 2019, pp. 2995–3052, doi:<a href="https://doi.org/10.4171/JEMS/896">10.4171/JEMS/896</a>.
  short: T. Hausel, M. Mereb, M. Wong, Journal of the European Mathematical Society
    21 (2019) 2995–3052.
date_created: 2018-12-11T11:46:29Z
date_published: 2019-10-01T00:00:00Z
date_updated: 2023-08-24T14:24:49Z
day: '01'
department:
- _id: TaHa
doi: 10.4171/JEMS/896
ec_funded: 1
external_id:
  arxiv:
  - '1604.03382'
  isi:
  - '000480413600002'
intvolume: '        21'
isi: 1
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1604.03382
month: '10'
oa: 1
oa_version: Preprint
page: 2995-3052
project:
- _id: 25E549F4-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '320593'
  name: Arithmetic and physics of Higgs moduli spaces
publication: Journal of the European Mathematical Society
publication_identifier:
  eissn:
  - 1435-9855
publication_status: published
publisher: European Mathematical Society
publist_id: '7384'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Arithmetic and representation theory of wild character varieties
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 21
year: '2019'
...
---
_id: '441'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Nikita
  full_name: Kalinin, Nikita
  last_name: Kalinin
- first_name: Mikhail
  full_name: Shkolnikov, Mikhail
  id: 35084A62-F248-11E8-B48F-1D18A9856A87
  last_name: Shkolnikov
  orcid: 0000-0002-4310-178X
citation:
  ama: Kalinin N, Shkolnikov M. Tropical formulae for summation over a part of SL(2,Z).
    <i>European Journal of Mathematics</i>. 2019;5(3):909–928. doi:<a href="https://doi.org/10.1007/s40879-018-0218-0">10.1007/s40879-018-0218-0</a>
  apa: Kalinin, N., &#38; Shkolnikov, M. (2019). Tropical formulae for summation over
    a part of SL(2,Z). <i>European Journal of Mathematics</i>. Springer Nature. <a
    href="https://doi.org/10.1007/s40879-018-0218-0">https://doi.org/10.1007/s40879-018-0218-0</a>
  chicago: Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation
    over a Part of SL(2,Z).” <i>European Journal of Mathematics</i>. Springer Nature,
    2019. <a href="https://doi.org/10.1007/s40879-018-0218-0">https://doi.org/10.1007/s40879-018-0218-0</a>.
  ieee: N. Kalinin and M. Shkolnikov, “Tropical formulae for summation over a part
    of SL(2,Z),” <i>European Journal of Mathematics</i>, vol. 5, no. 3. Springer Nature,
    pp. 909–928, 2019.
  ista: Kalinin N, Shkolnikov M. 2019. Tropical formulae for summation over a part
    of SL(2,Z). European Journal of Mathematics. 5(3), 909–928.
  mla: Kalinin, Nikita, and Mikhail Shkolnikov. “Tropical Formulae for Summation over
    a Part of SL(2,Z).” <i>European Journal of Mathematics</i>, vol. 5, no. 3, Springer
    Nature, 2019, pp. 909–928, doi:<a href="https://doi.org/10.1007/s40879-018-0218-0">10.1007/s40879-018-0218-0</a>.
  short: N. Kalinin, M. Shkolnikov, European Journal of Mathematics 5 (2019) 909–928.
date_created: 2018-12-11T11:46:29Z
date_published: 2019-09-15T00:00:00Z
date_updated: 2021-01-12T07:56:46Z
day: '15'
department:
- _id: TaHa
doi: 10.1007/s40879-018-0218-0
ec_funded: 1
external_id:
  arxiv:
  - '1711.02089'
intvolume: '         5'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1711.02089
month: '09'
oa: 1
oa_version: Preprint
page: 909–928
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: European Journal of Mathematics
publication_identifier:
  eissn:
  - 2199-6768
  issn:
  - 2199-675X
publication_status: published
publisher: Springer Nature
publist_id: '7382'
quality_controlled: '1'
scopus_import: 1
status: public
title: Tropical formulae for summation over a part of SL(2,Z)
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 5
year: '2019'
...
---
_id: '5'
abstract:
- lang: eng
  text: In this paper, we introduce a quantum version of the wonderful compactification
    of a group as a certain noncommutative projective scheme. Our approach stems from
    the fact that the wonderful compactification encodes the asymptotics of matrix
    coefficients, and from its realization as a GIT quotient of the Vinberg semigroup.
    In order to define the wonderful compactification for a quantum group, we adopt
    a generalized formalism of Proj categories in the spirit of Artin and Zhang. Key
    to our construction is a quantum version of the Vinberg semigroup, which we define
    as a q-deformation of a certain Rees algebra, compatible with a standard Poisson
    structure. Furthermore, we discuss quantum analogues of the stratification of
    the wonderful compactification by orbits for a certain group action, and provide
    explicit computations in the case of SL2.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Iordan V
  full_name: Ganev, Iordan V
  id: 447491B8-F248-11E8-B48F-1D18A9856A87
  last_name: Ganev
citation:
  ama: Ganev IV. The wonderful compactification for quantum groups. <i>Journal of
    the London Mathematical Society</i>. 2019;99(3):778-806. doi:<a href="https://doi.org/10.1112/jlms.12193">10.1112/jlms.12193</a>
  apa: Ganev, I. V. (2019). The wonderful compactification for quantum groups. <i>Journal
    of the London Mathematical Society</i>. Wiley. <a href="https://doi.org/10.1112/jlms.12193">https://doi.org/10.1112/jlms.12193</a>
  chicago: Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal
    of the London Mathematical Society</i>. Wiley, 2019. <a href="https://doi.org/10.1112/jlms.12193">https://doi.org/10.1112/jlms.12193</a>.
  ieee: I. V. Ganev, “The wonderful compactification for quantum groups,” <i>Journal
    of the London Mathematical Society</i>, vol. 99, no. 3. Wiley, pp. 778–806, 2019.
  ista: Ganev IV. 2019. The wonderful compactification for quantum groups. Journal
    of the London Mathematical Society. 99(3), 778–806.
  mla: Ganev, Iordan V. “The Wonderful Compactification for Quantum Groups.” <i>Journal
    of the London Mathematical Society</i>, vol. 99, no. 3, Wiley, 2019, pp. 778–806,
    doi:<a href="https://doi.org/10.1112/jlms.12193">10.1112/jlms.12193</a>.
  short: I.V. Ganev, Journal of the London Mathematical Society 99 (2019) 778–806.
date_created: 2018-12-11T11:44:06Z
date_published: 2019-06-01T00:00:00Z
date_updated: 2023-09-19T10:13:08Z
day: '01'
ddc:
- '510'
department:
- _id: TaHa
doi: 10.1112/jlms.12193
external_id:
  isi:
  - '000470025900008'
file:
- access_level: open_access
  checksum: 1be56239b2cd740a0e9a084f773c22f6
  content_type: application/pdf
  creator: kschuh
  date_created: 2020-01-07T13:31:53Z
  date_updated: 2020-07-14T12:46:35Z
  file_id: '7238'
  file_name: 2019_Wiley_Ganev.pdf
  file_size: 431754
  relation: main_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
intvolume: '        99'
isi: 1
issue: '3'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 778-806
publication: Journal of the London Mathematical Society
publication_status: published
publisher: Wiley
publist_id: '8052'
quality_controlled: '1'
scopus_import: '1'
status: public
title: The wonderful compactification for quantum groups
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 99
year: '2019'
...
