---
_id: '8185'
abstract:
- lang: eng
  text: "In this paper we study envy-free division problems. The classical approach
    to some of such problems, used by David Gale, reduces to considering continuous
    maps of a simplex to itself and finding sufficient conditions when this map hits
    the center of the simplex. The mere continuity is not sufficient for such a conclusion,
    the usual assumption (for example, in the Knaster--Kuratowski--Mazurkiewicz and
    the Gale theorem) is a certain boundary condition.\r\n  We follow Erel Segal-Halevi,
    Fr\\'ed\\'eric Meunier, and Shira Zerbib, and replace the boundary condition by
    another assumption, which has the economic meaning of possibility for a player
    to prefer an empty part in the segment\r\npartition problem. We solve the problem
    positively when $n$, the number of players that divide the segment, is a prime
    power, and we provide counterexamples for every $n$ which is not a prime power.
    We also provide counterexamples relevant to a wider class of fair or envy-free
    partition problems when $n$ is odd and not a prime power."
article_number: '1907.11183'
article_processing_charge: No
arxiv: 1
author:
- first_name: Sergey
  full_name: Avvakumov, Sergey
  id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
  last_name: Avvakumov
- first_name: Roman
  full_name: Karasev, Roman
  last_name: Karasev
citation:
  ama: Avvakumov S, Karasev R. Envy-free division using mapping degree. <i>arXiv</i>.
    doi:<a href="https://doi.org/10.48550/arXiv.1907.11183">10.48550/arXiv.1907.11183</a>
  apa: Avvakumov, S., &#38; Karasev, R. (n.d.). Envy-free division using mapping degree.
    <i>arXiv</i>. <a href="https://doi.org/10.48550/arXiv.1907.11183">https://doi.org/10.48550/arXiv.1907.11183</a>
  chicago: Avvakumov, Sergey, and Roman Karasev. “Envy-Free Division Using Mapping
    Degree.” <i>ArXiv</i>, n.d. <a href="https://doi.org/10.48550/arXiv.1907.11183">https://doi.org/10.48550/arXiv.1907.11183</a>.
  ieee: S. Avvakumov and R. Karasev, “Envy-free division using mapping degree,” <i>arXiv</i>.
    .
  ista: Avvakumov S, Karasev R. Envy-free division using mapping degree. arXiv, 1907.11183.
  mla: Avvakumov, Sergey, and Roman Karasev. “Envy-Free Division Using Mapping Degree.”
    <i>ArXiv</i>, 1907.11183, doi:<a href="https://doi.org/10.48550/arXiv.1907.11183">10.48550/arXiv.1907.11183</a>.
  short: S. Avvakumov, R. Karasev, ArXiv (n.d.).
date_created: 2020-07-30T10:45:51Z
date_published: 2019-07-25T00:00:00Z
date_updated: 2023-09-07T13:12:17Z
day: '25'
department:
- _id: UlWa
doi: 10.48550/arXiv.1907.11183
external_id:
  arxiv:
  - '1907.11183'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1907.11183
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 26611F5C-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P31312
  name: Algorithms for Embeddings and Homotopy Theory
publication: arXiv
publication_status: submitted
related_material:
  link:
  - relation: later_version
    url: https://doi.org/10.1112/mtk.12059
  record:
  - id: '8156'
    relation: dissertation_contains
    status: public
status: public
title: Envy-free division using mapping degree
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '151'
abstract:
- lang: eng
  text: We construct planar bi-Sobolev mappings whose local volume distortion is bounded
    from below by a given function f∈Lp with p&gt;1. More precisely, for any 1&lt;q&lt;(p+1)/2
    we construct W1,q-bi-Sobolev maps with identity boundary conditions; for f∈L∞,
    we provide bi-Lipschitz maps. The basic building block of our construction are
    bi-Lipschitz maps which stretch a given compact subset of the unit square by a
    given factor while preserving the boundary. The construction of these stretching
    maps relies on a slight strengthening of the celebrated covering result of Alberti,
    Csörnyei, and Preiss for measurable planar sets in the case of compact sets. We
    apply our result to a model functional in nonlinear elasticity, the integrand
    of which features fast blowup as the Jacobian determinant of the deformation becomes
    small. For such functionals, the derivation of the equilibrium equations for minimizers
    requires an additional regularization of test functions, which our maps provide.
article_processing_charge: No
arxiv: 1
author:
- first_name: Julian L
  full_name: Fischer, Julian L
  id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
  last_name: Fischer
  orcid: 0000-0002-0479-558X
- first_name: Olivier
  full_name: Kneuss, Olivier
  last_name: Kneuss
citation:
  ama: Fischer JL, Kneuss O. Bi-Sobolev solutions to the prescribed Jacobian inequality
    in the plane with L p data and applications to nonlinear elasticity. <i>Journal
    of Differential Equations</i>. 2019;266(1):257-311. doi:<a href="https://doi.org/10.1016/j.jde.2018.07.045">10.1016/j.jde.2018.07.045</a>
  apa: Fischer, J. L., &#38; Kneuss, O. (2019). Bi-Sobolev solutions to the prescribed
    Jacobian inequality in the plane with L p data and applications to nonlinear elasticity.
    <i>Journal of Differential Equations</i>. Elsevier. <a href="https://doi.org/10.1016/j.jde.2018.07.045">https://doi.org/10.1016/j.jde.2018.07.045</a>
  chicago: Fischer, Julian L, and Olivier Kneuss. “Bi-Sobolev Solutions to the Prescribed
    Jacobian Inequality in the Plane with L p Data and Applications to Nonlinear Elasticity.”
    <i>Journal of Differential Equations</i>. Elsevier, 2019. <a href="https://doi.org/10.1016/j.jde.2018.07.045">https://doi.org/10.1016/j.jde.2018.07.045</a>.
  ieee: J. L. Fischer and O. Kneuss, “Bi-Sobolev solutions to the prescribed Jacobian
    inequality in the plane with L p data and applications to nonlinear elasticity,”
    <i>Journal of Differential Equations</i>, vol. 266, no. 1. Elsevier, pp. 257–311,
    2019.
  ista: Fischer JL, Kneuss O. 2019. Bi-Sobolev solutions to the prescribed Jacobian
    inequality in the plane with L p data and applications to nonlinear elasticity.
    Journal of Differential Equations. 266(1), 257–311.
  mla: Fischer, Julian L., and Olivier Kneuss. “Bi-Sobolev Solutions to the Prescribed
    Jacobian Inequality in the Plane with L p Data and Applications to Nonlinear Elasticity.”
    <i>Journal of Differential Equations</i>, vol. 266, no. 1, Elsevier, 2019, pp.
    257–311, doi:<a href="https://doi.org/10.1016/j.jde.2018.07.045">10.1016/j.jde.2018.07.045</a>.
  short: J.L. Fischer, O. Kneuss, Journal of Differential Equations 266 (2019) 257–311.
date_created: 2018-12-11T11:44:54Z
date_published: 2019-01-05T00:00:00Z
date_updated: 2023-09-08T13:25:35Z
day: '05'
department:
- _id: JuFi
doi: 10.1016/j.jde.2018.07.045
external_id:
  arxiv:
  - '1408.1587'
  isi:
  - '000449108500010'
intvolume: '       266'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1408.1587
month: '01'
oa: 1
oa_version: Preprint
page: 257 - 311
publication: Journal of Differential Equations
publication_status: published
publisher: Elsevier
publist_id: '7770'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bi-Sobolev solutions to the prescribed Jacobian inequality in the plane with
  L p data and applications to nonlinear elasticity
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 266
year: '2019'
...
---
_id: '175'
abstract:
- lang: eng
  text: An upper bound sieve for rational points on suitable varieties isdeveloped,
    together with applications tocounting rational points in thin sets,to local solubility
    in families, and to the notion of “friable” rational pointswith respect to divisors.
    In the special case of quadrics, sharper estimates areobtained by developing a
    version of the Selberg sieve for rational points.
article_processing_charge: No
arxiv: 1
author:
- first_name: Timothy D
  full_name: Browning, Timothy D
  id: 35827D50-F248-11E8-B48F-1D18A9856A87
  last_name: Browning
  orcid: 0000-0002-8314-0177
- first_name: Daniel
  full_name: Loughran, Daniel
  last_name: Loughran
citation:
  ama: Browning TD, Loughran D. Sieving rational points on varieties. <i>Transactions
    of the American Mathematical Society</i>. 2019;371(8):5757-5785. doi:<a href="https://doi.org/10.1090/tran/7514">10.1090/tran/7514</a>
  apa: Browning, T. D., &#38; Loughran, D. (2019). Sieving rational points on varieties.
    <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society. <a href="https://doi.org/10.1090/tran/7514">https://doi.org/10.1090/tran/7514</a>
  chicago: Browning, Timothy D, and Daniel Loughran. “Sieving Rational Points on Varieties.”
    <i>Transactions of the American Mathematical Society</i>. American Mathematical
    Society, 2019. <a href="https://doi.org/10.1090/tran/7514">https://doi.org/10.1090/tran/7514</a>.
  ieee: T. D. Browning and D. Loughran, “Sieving rational points on varieties,” <i>Transactions
    of the American Mathematical Society</i>, vol. 371, no. 8. American Mathematical
    Society, pp. 5757–5785, 2019.
  ista: Browning TD, Loughran D. 2019. Sieving rational points on varieties. Transactions
    of the American Mathematical Society. 371(8), 5757–5785.
  mla: Browning, Timothy D., and Daniel Loughran. “Sieving Rational Points on Varieties.”
    <i>Transactions of the American Mathematical Society</i>, vol. 371, no. 8, American
    Mathematical Society, 2019, pp. 5757–85, doi:<a href="https://doi.org/10.1090/tran/7514">10.1090/tran/7514</a>.
  short: T.D. Browning, D. Loughran, Transactions of the American Mathematical Society
    371 (2019) 5757–5785.
date_created: 2018-12-11T11:45:01Z
date_published: 2019-04-15T00:00:00Z
date_updated: 2023-08-24T14:34:56Z
day: '15'
department:
- _id: TiBr
doi: 10.1090/tran/7514
external_id:
  arxiv:
  - '1705.01999'
  isi:
  - '000464034200019'
intvolume: '       371'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1705.01999
month: '04'
oa: 1
oa_version: Preprint
page: 5757-5785
publication: Transactions of the American Mathematical Society
publication_identifier:
  eissn:
  - '10886850'
  issn:
  - '00029947'
publication_status: published
publisher: American Mathematical Society
publist_id: '7746'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sieving rational points on varieties
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 371
year: '2019'
...
---
_id: '196'
abstract:
- lang: eng
  text: 'The abelian sandpile serves as a model to study self-organized criticality,
    a phenomenon occurring in biological, physical and social processes. The identity
    of the abelian group is a fractal composed of self-similar patches, and its limit
    is subject of extensive collaborative research. Here, we analyze the evolution
    of the sandpile identity under harmonic fields of different orders. We show that
    this evolution corresponds to periodic cycles through the abelian group characterized
    by the smooth transformation and apparent conservation of the patches constituting
    the identity. The dynamics induced by second and third order harmonics resemble
    smooth stretchings, respectively translations, of the identity, while the ones
    induced by fourth order harmonics resemble magnifications and rotations. Starting
    with order three, the dynamics pass through extended regions of seemingly random
    configurations which spontaneously reassemble into accentuated patterns. We show
    that the space of harmonic functions projects to the extended analogue of the
    sandpile group, thus providing a set of universal coordinates identifying configurations
    between different domains. Since the original sandpile group is a subgroup of
    the extended one, this directly implies that it admits a natural renormalization.
    Furthermore, we show that the harmonic fields can be induced by simple Markov
    processes, and that the corresponding stochastic dynamics show remarkable robustness
    over hundreds of periods. Finally, we encode information into seemingly random
    configurations, and decode this information with an algorithm requiring minimal
    prior knowledge. Our results suggest that harmonic fields might split the sandpile
    group into sub-sets showing different critical coefficients, and that it might
    be possible to extend the fractal structure of the identity beyond the boundaries
    of its domain. '
acknowledgement: "M.L. is grateful to the members of the C Guet and G Tkacik groups
  for valuable comments and support. M.S. is grateful to Nikita Kalinin for inspiring
  communications.\r\n"
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Moritz
  full_name: Lang, Moritz
  id: 29E0800A-F248-11E8-B48F-1D18A9856A87
  last_name: Lang
- first_name: Mikhail
  full_name: Shkolnikov, Mikhail
  id: 35084A62-F248-11E8-B48F-1D18A9856A87
  last_name: Shkolnikov
  orcid: 0000-0002-4310-178X
citation:
  ama: Lang M, Shkolnikov M. Harmonic dynamics of the Abelian sandpile. <i>Proceedings
    of the National Academy of Sciences</i>. 2019;116(8):2821-2830. doi:<a href="https://doi.org/10.1073/pnas.1812015116">10.1073/pnas.1812015116</a>
  apa: Lang, M., &#38; Shkolnikov, M. (2019). Harmonic dynamics of the Abelian sandpile.
    <i>Proceedings of the National Academy of Sciences</i>. National Academy of Sciences.
    <a href="https://doi.org/10.1073/pnas.1812015116">https://doi.org/10.1073/pnas.1812015116</a>
  chicago: Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian
    Sandpile.” <i>Proceedings of the National Academy of Sciences</i>. National Academy
    of Sciences, 2019. <a href="https://doi.org/10.1073/pnas.1812015116">https://doi.org/10.1073/pnas.1812015116</a>.
  ieee: M. Lang and M. Shkolnikov, “Harmonic dynamics of the Abelian sandpile,” <i>Proceedings
    of the National Academy of Sciences</i>, vol. 116, no. 8. National Academy of
    Sciences, pp. 2821–2830, 2019.
  ista: Lang M, Shkolnikov M. 2019. Harmonic dynamics of the Abelian sandpile. Proceedings
    of the National Academy of Sciences. 116(8), 2821–2830.
  mla: Lang, Moritz, and Mikhail Shkolnikov. “Harmonic Dynamics of the Abelian Sandpile.”
    <i>Proceedings of the National Academy of Sciences</i>, vol. 116, no. 8, National
    Academy of Sciences, 2019, pp. 2821–30, doi:<a href="https://doi.org/10.1073/pnas.1812015116">10.1073/pnas.1812015116</a>.
  short: M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116
    (2019) 2821–2830.
date_created: 2018-12-11T11:45:08Z
date_published: 2019-02-19T00:00:00Z
date_updated: 2023-09-11T14:09:34Z
day: '19'
department:
- _id: CaGu
- _id: GaTk
- _id: TaHa
doi: 10.1073/pnas.1812015116
external_id:
  arxiv:
  - '1806.10823'
  isi:
  - '000459074400013'
  pmid:
  - ' 30728300'
intvolume: '       116'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1073/pnas.1812015116
month: '02'
oa: 1
oa_version: Published Version
page: 2821-2830
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
  eissn:
  - 1091-6490
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Webpage
    relation: press_release
    url: https://ist.ac.at/en/news/famous-sandpile-model-shown-to-move-like-a-traveling-sand-dune/
scopus_import: '1'
status: public
title: Harmonic dynamics of the Abelian sandpile
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 116
year: '2019'
...
---
_id: '138'
abstract:
- lang: eng
  text: Autoregulation is the direct modulation of gene expression by the product
    of the corresponding gene. Autoregulation of bacterial gene expression has been
    mostly studied at the transcriptional level, when a protein acts as the cognate
    transcriptional repressor. A recent study investigating dynamics of the bacterial
    toxin–antitoxin MazEF system has shown how autoregulation at both the transcriptional
    and post-transcriptional levels affects the heterogeneity of Escherichia coli
    populations. Toxin–antitoxin systems hold a crucial but still elusive part in
    bacterial response to stress. This perspective highlights how these modules can
    also serve as a great model system for investigating basic concepts in gene regulation.
    However, as the genomic background and environmental conditions substantially
    influence toxin activation, it is important to study (auto)regulation of toxin–antitoxin
    systems in well-defined setups as well as in conditions that resemble the environmental
    niche.
article_processing_charge: Yes (via OA deal)
author:
- first_name: Nela
  full_name: Nikolic, Nela
  id: 42D9CABC-F248-11E8-B48F-1D18A9856A87
  last_name: Nikolic
  orcid: 0000-0001-9068-6090
citation:
  ama: 'Nikolic N. Autoregulation of bacterial gene expression: lessons from the MazEF
    toxin–antitoxin system. <i>Current Genetics</i>. 2019;65(1):133-138. doi:<a href="https://doi.org/10.1007/s00294-018-0879-8">10.1007/s00294-018-0879-8</a>'
  apa: 'Nikolic, N. (2019). Autoregulation of bacterial gene expression: lessons from
    the MazEF toxin–antitoxin system. <i>Current Genetics</i>. Springer. <a href="https://doi.org/10.1007/s00294-018-0879-8">https://doi.org/10.1007/s00294-018-0879-8</a>'
  chicago: 'Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from
    the MazEF Toxin–Antitoxin System.” <i>Current Genetics</i>. Springer, 2019. <a
    href="https://doi.org/10.1007/s00294-018-0879-8">https://doi.org/10.1007/s00294-018-0879-8</a>.'
  ieee: 'N. Nikolic, “Autoregulation of bacterial gene expression: lessons from the
    MazEF toxin–antitoxin system,” <i>Current Genetics</i>, vol. 65, no. 1. Springer,
    pp. 133–138, 2019.'
  ista: 'Nikolic N. 2019. Autoregulation of bacterial gene expression: lessons from
    the MazEF toxin–antitoxin system. Current Genetics. 65(1), 133–138.'
  mla: 'Nikolic, Nela. “Autoregulation of Bacterial Gene Expression: Lessons from
    the MazEF Toxin–Antitoxin System.” <i>Current Genetics</i>, vol. 65, no. 1, Springer,
    2019, pp. 133–38, doi:<a href="https://doi.org/10.1007/s00294-018-0879-8">10.1007/s00294-018-0879-8</a>.'
  short: N. Nikolic, Current Genetics 65 (2019) 133–138.
date_created: 2018-12-11T11:44:50Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2023-09-08T13:23:42Z
day: '01'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.1007/s00294-018-0879-8
ec_funded: 1
external_id:
  isi:
  - '000456958800017'
file:
- access_level: open_access
  checksum: 6779708b0b632a1a6ed28c56f5161142
  content_type: application/pdf
  creator: dernst
  date_created: 2019-02-06T07:50:58Z
  date_updated: 2020-07-14T12:44:47Z
  file_id: '5930'
  file_name: 2019_CurrentGenetics_Nikolic.pdf
  file_size: 776399
  relation: main_file
file_date_updated: 2020-07-14T12:44:47Z
has_accepted_license: '1'
intvolume: '        65'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 133-138
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Current Genetics
publication_status: published
publisher: Springer
publist_id: '7785'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Autoregulation of bacterial gene expression: lessons from the MazEF toxin–antitoxin
  system'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 65
year: '2019'
...
---
_id: '14184'
abstract:
- lang: eng
  text: "Learning disentangled representations is considered a cornerstone problem
    in\r\nrepresentation learning. Recently, Locatello et al. (2019) demonstrated
    that\r\nunsupervised disentanglement learning without inductive biases is theoretically\r\nimpossible
    and that existing inductive biases and unsupervised methods do not\r\nallow to
    consistently learn disentangled representations. However, in many\r\npractical
    settings, one might have access to a limited amount of supervision,\r\nfor example
    through manual labeling of (some) factors of variation in a few\r\ntraining examples.
    In this paper, we investigate the impact of such supervision\r\non state-of-the-art
    disentanglement methods and perform a large scale study,\r\ntraining over 52000
    models under well-defined and reproducible experimental\r\nconditions. We observe
    that a small number of labeled examples (0.01--0.5\\% of\r\nthe data set), with
    potentially imprecise and incomplete labels, is sufficient\r\nto perform model
    selection on state-of-the-art unsupervised models. Further, we\r\ninvestigate
    the benefit of incorporating supervision into the training process.\r\nOverall,
    we empirically validate that with little and imprecise supervision it\r\nis possible
    to reliably learn disentangled representations."
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Michael
  full_name: Tschannen, Michael
  last_name: Tschannen
- first_name: Stefan
  full_name: Bauer, Stefan
  last_name: Bauer
- first_name: Gunnar
  full_name: Rätsch, Gunnar
  last_name: Rätsch
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Olivier
  full_name: Bachem, Olivier
  last_name: Bachem
citation:
  ama: 'Locatello F, Tschannen M, Bauer S, Rätsch G, Schölkopf B, Bachem O. Disentangling
    factors of variation using few labels. In: <i>8th International Conference on
    Learning Representations</i>. ; 2019.'
  apa: Locatello, F., Tschannen, M., Bauer, S., Rätsch, G., Schölkopf, B., &#38; Bachem,
    O. (2019). Disentangling factors of variation using few labels. In <i>8th International
    Conference on Learning Representations</i>. Virtual.
  chicago: Locatello, Francesco, Michael Tschannen, Stefan Bauer, Gunnar Rätsch, Bernhard
    Schölkopf, and Olivier Bachem. “Disentangling Factors of Variation Using Few Labels.”
    In <i>8th International Conference on Learning Representations</i>, 2019.
  ieee: F. Locatello, M. Tschannen, S. Bauer, G. Rätsch, B. Schölkopf, and O. Bachem,
    “Disentangling factors of variation using few labels,” in <i>8th International
    Conference on Learning Representations</i>, Virtual, 2019.
  ista: 'Locatello F, Tschannen M, Bauer S, Rätsch G, Schölkopf B, Bachem O. 2019.
    Disentangling factors of variation using few labels. 8th International Conference
    on Learning Representations. ICLR: International Conference on Learning Representations.'
  mla: Locatello, Francesco, et al. “Disentangling Factors of Variation Using Few
    Labels.” <i>8th International Conference on Learning Representations</i>, 2019.
  short: F. Locatello, M. Tschannen, S. Bauer, G. Rätsch, B. Schölkopf, O. Bachem,
    in:, 8th International Conference on Learning Representations, 2019.
conference:
  end_date: 2020-05-01
  location: Virtual
  name: 'ICLR: International Conference on Learning Representations'
  start_date: 2020-04-26
date_created: 2023-08-22T14:06:37Z
date_published: 2019-12-20T00:00:00Z
date_updated: 2023-09-12T07:01:34Z
day: '20'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1905.01258'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1905.01258
month: '12'
oa: 1
oa_version: Preprint
publication: 8th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
scopus_import: '1'
status: public
title: Disentangling factors of variation using few labels
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2019'
...
---
_id: '14189'
abstract:
- lang: eng
  text: "We consider the problem of recovering a common latent source with independent\r\ncomponents
    from multiple views. This applies to settings in which a variable is\r\nmeasured
    with multiple experimental modalities, and where the goal is to\r\nsynthesize
    the disparate measurements into a single unified representation. We\r\nconsider
    the case that the observed views are a nonlinear mixing of\r\ncomponent-wise corruptions
    of the sources. When the views are considered\r\nseparately, this reduces to nonlinear
    Independent Component Analysis (ICA) for\r\nwhich it is provably impossible to
    undo the mixing. We present novel\r\nidentifiability proofs that this is possible
    when the multiple views are\r\nconsidered jointly, showing that the mixing can
    theoretically be undone using\r\nfunction approximators such as deep neural networks.
    In contrast to known\r\nidentifiability results for nonlinear ICA, we prove that
    independent latent\r\nsources with arbitrary mixing can be recovered as long as
    multiple,\r\nsufficiently different noisy views are available."
alternative_title:
- PMLR
article_processing_charge: No
arxiv: 1
author:
- first_name: Luigi
  full_name: Gresele, Luigi
  last_name: Gresele
- first_name: Paul K.
  full_name: Rubenstein, Paul K.
  last_name: Rubenstein
- first_name: Arash
  full_name: Mehrjou, Arash
  last_name: Mehrjou
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
citation:
  ama: 'Gresele L, Rubenstein PK, Mehrjou A, Locatello F, Schölkopf B. The incomplete
    Rosetta Stone problem: Identifiability results for multi-view nonlinear ICA. In:
    <i>Proceedings of the 35th Conference on Uncertainty in Artificial  Intelligence</i>.
    Vol 115. ML Research Press; 2019:217-227.'
  apa: 'Gresele, L., Rubenstein, P. K., Mehrjou, A., Locatello, F., &#38; Schölkopf,
    B. (2019). The incomplete Rosetta Stone problem: Identifiability results for multi-view
    nonlinear ICA. In <i>Proceedings of the 35th Conference on Uncertainty in Artificial 
    Intelligence</i> (Vol. 115, pp. 217–227). Tel Aviv, Israel: ML Research Press.'
  chicago: 'Gresele, Luigi, Paul K. Rubenstein, Arash Mehrjou, Francesco Locatello,
    and Bernhard Schölkopf. “The Incomplete Rosetta Stone Problem: Identifiability
    Results for Multi-View Nonlinear ICA.” In <i>Proceedings of the 35th Conference
    on Uncertainty in Artificial  Intelligence</i>, 115:217–27. ML Research Press,
    2019.'
  ieee: 'L. Gresele, P. K. Rubenstein, A. Mehrjou, F. Locatello, and B. Schölkopf,
    “The incomplete Rosetta Stone problem: Identifiability results for multi-view
    nonlinear ICA,” in <i>Proceedings of the 35th Conference on Uncertainty in Artificial 
    Intelligence</i>, Tel Aviv, Israel, 2019, vol. 115, pp. 217–227.'
  ista: 'Gresele L, Rubenstein PK, Mehrjou A, Locatello F, Schölkopf B. 2019. The
    incomplete Rosetta Stone problem: Identifiability results for multi-view nonlinear
    ICA. Proceedings of the 35th Conference on Uncertainty in Artificial  Intelligence.
    UAI: Uncertainty in Artificial Intelligence, PMLR, vol. 115, 217–227.'
  mla: 'Gresele, Luigi, et al. “The Incomplete Rosetta Stone Problem: Identifiability
    Results for Multi-View Nonlinear ICA.” <i>Proceedings of the 35th Conference on
    Uncertainty in Artificial  Intelligence</i>, vol. 115, ML Research Press, 2019,
    pp. 217–27.'
  short: L. Gresele, P.K. Rubenstein, A. Mehrjou, F. Locatello, B. Schölkopf, in:,
    Proceedings of the 35th Conference on Uncertainty in Artificial  Intelligence,
    ML Research Press, 2019, pp. 217–227.
conference:
  end_date: 2019-07-25
  location: Tel Aviv, Israel
  name: 'UAI: Uncertainty in Artificial Intelligence'
  start_date: 2019-07-22
date_created: 2023-08-22T14:08:35Z
date_published: 2019-05-16T00:00:00Z
date_updated: 2023-09-12T08:07:38Z
day: '16'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1905.06642'
intvolume: '       115'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1905.06642
month: '05'
oa: 1
oa_version: Preprint
page: 217-227
publication: Proceedings of the 35th Conference on Uncertainty in Artificial  Intelligence
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'The incomplete Rosetta Stone problem: Identifiability results for multi-view
  nonlinear ICA'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2019'
...
---
_id: '14190'
abstract:
- lang: eng
  text: "Learning meaningful and compact representations with disentangled semantic\r\naspects
    is considered to be of key importance in representation learning. Since\r\nreal-world
    data is notoriously costly to collect, many recent state-of-the-art\r\ndisentanglement
    models have heavily relied on synthetic toy data-sets. In this\r\npaper, we propose
    a novel data-set which consists of over one million images of\r\nphysical 3D objects
    with seven factors of variation, such as object color,\r\nshape, size and position.
    In order to be able to control all the factors of\r\nvariation precisely, we built
    an experimental platform where the objects are\r\nbeing moved by a robotic arm.
    In addition, we provide two more datasets which\r\nconsist of simulations of the
    experimental setup. These datasets provide for\r\nthe first time the possibility
    to systematically investigate how well different\r\ndisentanglement methods perform
    on real data in comparison to simulation, and\r\nhow simulated data can be leveraged
    to build better representations of the real\r\nworld. We provide a first experimental
    study of these questions and our results\r\nindicate that learned models transfer
    poorly, but that model and hyperparameter\r\nselection is an effective means of
    transferring information to the real world."
article_processing_charge: No
arxiv: 1
author:
- first_name: Muhammad Waleed
  full_name: Gondal, Muhammad Waleed
  last_name: Gondal
- first_name: Manuel
  full_name: Wüthrich, Manuel
  last_name: Wüthrich
- first_name: Đorđe
  full_name: Miladinović, Đorđe
  last_name: Miladinović
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Martin
  full_name: Breidt, Martin
  last_name: Breidt
- first_name: Valentin
  full_name: Volchkov, Valentin
  last_name: Volchkov
- first_name: Joel
  full_name: Akpo, Joel
  last_name: Akpo
- first_name: Olivier
  full_name: Bachem, Olivier
  last_name: Bachem
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Stefan
  full_name: Bauer, Stefan
  last_name: Bauer
citation:
  ama: 'Gondal MW, Wüthrich M, Miladinović Đ, et al. On the transfer of inductive
    bias from simulation to the real world: a new disentanglement dataset. In: <i>Advances
    in Neural Information Processing Systems</i>. Vol 32. ; 2019.'
  apa: 'Gondal, M. W., Wüthrich, M., Miladinović, Đ., Locatello, F., Breidt, M., Volchkov,
    V., … Bauer, S. (2019). On the transfer of inductive bias from simulation to the
    real world: a new disentanglement dataset. In <i>Advances in Neural Information
    Processing Systems</i> (Vol. 32). Vancouver, Canada.'
  chicago: 'Gondal, Muhammad Waleed, Manuel Wüthrich, Đorđe Miladinović, Francesco
    Locatello, Martin Breidt, Valentin Volchkov, Joel Akpo, Olivier Bachem, Bernhard
    Schölkopf, and Stefan Bauer. “On the Transfer of Inductive Bias from Simulation
    to the Real World: A New Disentanglement Dataset.” In <i>Advances in Neural Information
    Processing Systems</i>, Vol. 32, 2019.'
  ieee: 'M. W. Gondal <i>et al.</i>, “On the transfer of inductive bias from simulation
    to the real world: a new disentanglement dataset,” in <i>Advances in Neural Information
    Processing Systems</i>, Vancouver, Canada, 2019, vol. 32.'
  ista: 'Gondal MW, Wüthrich M, Miladinović Đ, Locatello F, Breidt M, Volchkov V,
    Akpo J, Bachem O, Schölkopf B, Bauer S. 2019. On the transfer of inductive bias
    from simulation to the real world: a new disentanglement dataset. Advances in
    Neural Information Processing Systems. NeurIPS: Neural Information Processing
    Systems vol. 32.'
  mla: 'Gondal, Muhammad Waleed, et al. “On the Transfer of Inductive Bias from Simulation
    to the Real World: A New Disentanglement Dataset.” <i>Advances in Neural Information
    Processing Systems</i>, vol. 32, 2019.'
  short: M.W. Gondal, M. Wüthrich, Đ. Miladinović, F. Locatello, M. Breidt, V. Volchkov,
    J. Akpo, O. Bachem, B. Schölkopf, S. Bauer, in:, Advances in Neural Information
    Processing Systems, 2019.
conference:
  end_date: 2019-12-14
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2019-12-08
date_created: 2023-08-22T14:09:13Z
date_published: 2019-06-07T00:00:00Z
date_updated: 2023-09-13T09:46:38Z
day: '07'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1906.03292'
intvolume: '        32'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1906.03292
month: '06'
oa: 1
oa_version: Preprint
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713807933'
publication_status: published
quality_controlled: '1'
status: public
title: 'On the transfer of inductive bias from simulation to the real world: a new
  disentanglement dataset'
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2019'
...
---
_id: '14191'
abstract:
- lang: eng
  text: A broad class of convex optimization problems can be formulated as a semidefinite
    program (SDP), minimization of a convex function over the positive-semidefinite
    cone subject to some affine constraints. The majority of classical SDP solvers
    are designed for the deterministic setting where problem data is readily available.
    In this setting, generalized conditional gradient methods (aka Frank-Wolfe-type
    methods) provide scalable solutions by leveraging the so-called linear minimization
    oracle instead of the projection onto the semidefinite cone. Most problems in
    machine learning and modern engineering applications, however, contain some degree
    of stochasticity. In this work, we propose the first conditional-gradient-type
    method for solving stochastic optimization problems under affine constraints.
    Our method guarantees O(k−1/3) convergence rate in expectation on the objective
    residual and O(k−5/12) on the feasibility gap.
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Alp
  full_name: Yurtsever, Alp
  last_name: Yurtsever
- first_name: Olivier
  full_name: Fercoq, Olivier
  last_name: Fercoq
- first_name: Volkan
  full_name: Cevher, Volkan
  last_name: Cevher
citation:
  ama: 'Locatello F, Yurtsever A, Fercoq O, Cevher V. Stochastic Frank-Wolfe for composite
    convex minimization. In: <i>Advances in Neural Information Processing Systems</i>.
    Vol 32. ; 2019:14291–14301.'
  apa: Locatello, F., Yurtsever, A., Fercoq, O., &#38; Cevher, V. (2019). Stochastic
    Frank-Wolfe for composite convex minimization. In <i>Advances in Neural Information
    Processing Systems</i> (Vol. 32, pp. 14291–14301). Vancouver, Canada.
  chicago: Locatello, Francesco, Alp Yurtsever, Olivier Fercoq, and Volkan Cevher.
    “Stochastic Frank-Wolfe for Composite Convex Minimization.” In <i>Advances in
    Neural Information Processing Systems</i>, 32:14291–14301, 2019.
  ieee: F. Locatello, A. Yurtsever, O. Fercoq, and V. Cevher, “Stochastic Frank-Wolfe
    for composite convex minimization,” in <i>Advances in Neural Information Processing
    Systems</i>, Vancouver, Canada, 2019, vol. 32, pp. 14291–14301.
  ista: 'Locatello F, Yurtsever A, Fercoq O, Cevher V. 2019. Stochastic Frank-Wolfe
    for composite convex minimization. Advances in Neural Information Processing Systems.
    NeurIPS: Neural Information Processing Systems vol. 32, 14291–14301.'
  mla: Locatello, Francesco, et al. “Stochastic Frank-Wolfe for Composite Convex Minimization.”
    <i>Advances in Neural Information Processing Systems</i>, vol. 32, 2019, pp. 14291–14301.
  short: F. Locatello, A. Yurtsever, O. Fercoq, V. Cevher, in:, Advances in Neural
    Information Processing Systems, 2019, pp. 14291–14301.
conference:
  end_date: 2019-12-14
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2019-12-08
date_created: 2023-08-22T14:09:35Z
date_published: 2019-12-29T00:00:00Z
date_updated: 2023-09-12T08:48:45Z
day: '29'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1901.10348'
intvolume: '        32'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1901.10348
month: '12'
oa: 1
oa_version: Preprint
page: 14291–14301
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713807933'
publication_status: published
quality_controlled: '1'
scopus_import: '1'
status: public
title: Stochastic Frank-Wolfe for composite convex minimization
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2019'
...
---
_id: '14193'
abstract:
- lang: eng
  text: "A disentangled representation encodes information about the salient factors\r\nof
    variation in the data independently. Although it is often argued that this\r\nrepresentational
    format is useful in learning to solve many real-world\r\ndown-stream tasks, there
    is little empirical evidence that supports this claim.\r\nIn this paper, we conduct
    a large-scale study that investigates whether\r\ndisentangled representations
    are more suitable for abstract reasoning tasks.\r\nUsing two new tasks similar
    to Raven's Progressive Matrices, we evaluate the\r\nusefulness of the representations
    learned by 360 state-of-the-art unsupervised\r\ndisentanglement models. Based
    on these representations, we train 3600 abstract\r\nreasoning models and observe
    that disentangled representations do in fact lead\r\nto better down-stream performance.
    In particular, they enable quicker learning\r\nusing fewer samples."
article_processing_charge: No
arxiv: 1
author:
- first_name: Sjoerd van
  full_name: Steenkiste, Sjoerd van
  last_name: Steenkiste
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Jürgen
  full_name: Schmidhuber, Jürgen
  last_name: Schmidhuber
- first_name: Olivier
  full_name: Bachem, Olivier
  last_name: Bachem
citation:
  ama: 'Steenkiste S van, Locatello F, Schmidhuber J, Bachem O. Are disentangled representations
    helpful for abstract visual reasoning? In: <i>Advances in Neural Information Processing
    Systems</i>. Vol 32. ; 2019.'
  apa: Steenkiste, S. van, Locatello, F., Schmidhuber, J., &#38; Bachem, O. (2019).
    Are disentangled representations helpful for abstract visual reasoning? In <i>Advances
    in Neural Information Processing Systems</i> (Vol. 32). Vancouver, Canada.
  chicago: Steenkiste, Sjoerd van, Francesco Locatello, Jürgen Schmidhuber, and Olivier
    Bachem. “Are Disentangled Representations Helpful for Abstract Visual Reasoning?”
    In <i>Advances in Neural Information Processing Systems</i>, Vol. 32, 2019.
  ieee: S. van Steenkiste, F. Locatello, J. Schmidhuber, and O. Bachem, “Are disentangled
    representations helpful for abstract visual reasoning?,” in <i>Advances in Neural
    Information Processing Systems</i>, Vancouver, Canada, 2019, vol. 32.
  ista: 'Steenkiste S van, Locatello F, Schmidhuber J, Bachem O. 2019. Are disentangled
    representations helpful for abstract visual reasoning? Advances in Neural Information
    Processing Systems. NeurIPS: Neural Information Processing Systems vol. 32.'
  mla: Steenkiste, Sjoerd van, et al. “Are Disentangled Representations Helpful for
    Abstract Visual Reasoning?” <i>Advances in Neural Information Processing Systems</i>,
    vol. 32, 2019.
  short: S. van Steenkiste, F. Locatello, J. Schmidhuber, O. Bachem, in:, Advances
    in Neural Information Processing Systems, 2019.
conference:
  end_date: 2019-12-14
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2019-12-08
date_created: 2023-08-22T14:09:53Z
date_published: 2019-05-29T00:00:00Z
date_updated: 2023-09-12T09:02:43Z
day: '29'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1905.12506'
intvolume: '        32'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.48550/arXiv.1905.12506
month: '05'
oa: 1
oa_version: Preprint
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713807933'
publication_status: published
quality_controlled: '1'
status: public
title: Are disentangled representations helpful for abstract visual reasoning?
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2019'
...
---
_id: '14197'
abstract:
- lang: eng
  text: "Recently there has been a significant interest in learning disentangled\r\nrepresentations,
    as they promise increased interpretability, generalization to\r\nunseen scenarios
    and faster learning on downstream tasks. In this paper, we\r\ninvestigate the
    usefulness of different notions of disentanglement for\r\nimproving the fairness
    of downstream prediction tasks based on representations.\r\nWe consider the setting
    where the goal is to predict a target variable based on\r\nthe learned representation
    of high-dimensional observations (such as images)\r\nthat depend on both the target
    variable and an \\emph{unobserved} sensitive\r\nvariable. We show that in this
    setting both the optimal and empirical\r\npredictions can be unfair, even if the
    target variable and the sensitive\r\nvariable are independent. Analyzing the representations
    of more than\r\n\\num{12600} trained state-of-the-art disentangled models, we
    observe that\r\nseveral disentanglement scores are consistently correlated with
    increased\r\nfairness, suggesting that disentanglement may be a useful property
    to encourage\r\nfairness when sensitive variables are not observed."
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Gabriele
  full_name: Abbati, Gabriele
  last_name: Abbati
- first_name: Tom
  full_name: Rainforth, Tom
  last_name: Rainforth
- first_name: Stefan
  full_name: Bauer, Stefan
  last_name: Bauer
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Olivier
  full_name: Bachem, Olivier
  last_name: Bachem
citation:
  ama: 'Locatello F, Abbati G, Rainforth T, Bauer S, Schölkopf B, Bachem O. On the
    fairness of disentangled representations. In: <i>Advances in Neural Information
    Processing Systems</i>. Vol 32. ; 2019:14611–14624.'
  apa: Locatello, F., Abbati, G., Rainforth, T., Bauer, S., Schölkopf, B., &#38; Bachem,
    O. (2019). On the fairness of disentangled representations. In <i>Advances in
    Neural Information Processing Systems</i> (Vol. 32, pp. 14611–14624). Vancouver,
    Canada.
  chicago: Locatello, Francesco, Gabriele Abbati, Tom Rainforth, Stefan Bauer, Bernhard
    Schölkopf, and Olivier Bachem. “On the Fairness of Disentangled Representations.”
    In <i>Advances in Neural Information Processing Systems</i>, 32:14611–14624, 2019.
  ieee: F. Locatello, G. Abbati, T. Rainforth, S. Bauer, B. Schölkopf, and O. Bachem,
    “On the fairness of disentangled representations,” in <i>Advances in Neural Information
    Processing Systems</i>, Vancouver, Canada, 2019, vol. 32, pp. 14611–14624.
  ista: 'Locatello F, Abbati G, Rainforth T, Bauer S, Schölkopf B, Bachem O. 2019.
    On the fairness of disentangled representations. Advances in Neural Information
    Processing Systems. NeurIPS: Neural Information Processing Systems vol. 32, 14611–14624.'
  mla: Locatello, Francesco, et al. “On the Fairness of Disentangled Representations.”
    <i>Advances in Neural Information Processing Systems</i>, vol. 32, 2019, pp. 14611–14624.
  short: F. Locatello, G. Abbati, T. Rainforth, S. Bauer, B. Schölkopf, O. Bachem,
    in:, Advances in Neural Information Processing Systems, 2019, pp. 14611–14624.
conference:
  end_date: 2019-12-14
  location: Vancouver, Canada
  name: 'NeurIPS: Neural Information Processing Systems'
  start_date: 2019-12-08
date_created: 2023-08-22T14:12:28Z
date_published: 2019-12-08T00:00:00Z
date_updated: 2023-09-12T09:37:22Z
day: '08'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1905.13662'
intvolume: '        32'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1905.13662
month: '12'
oa: 1
oa_version: Preprint
page: 14611–14624
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713807933'
publication_status: published
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the fairness of disentangled representations
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 32
year: '2019'
...
---
_id: '14200'
abstract:
- lang: eng
  text: "The key idea behind the unsupervised learning of disentangled representations\r\nis
    that real-world data is generated by a few explanatory factors of variation\r\nwhich
    can be recovered by unsupervised learning algorithms. In this paper, we\r\nprovide
    a sober look at recent progress in the field and challenge some common\r\nassumptions.
    We first theoretically show that the unsupervised learning of\r\ndisentangled
    representations is fundamentally impossible without inductive\r\nbiases on both
    the models and the data. Then, we train more than 12000 models\r\ncovering most
    prominent methods and evaluation metrics in a reproducible\r\nlarge-scale experimental
    study on seven different data sets. We observe that\r\nwhile the different methods
    successfully enforce properties ``encouraged'' by\r\nthe corresponding losses,
    well-disentangled models seemingly cannot be\r\nidentified without supervision.
    Furthermore, increased disentanglement does not\r\nseem to lead to a decreased
    sample complexity of learning for downstream tasks.\r\nOur results suggest that
    future work on disentanglement learning should be\r\nexplicit about the role of
    inductive biases and (implicit) supervision,\r\ninvestigate concrete benefits
    of enforcing disentanglement of the learned\r\nrepresentations, and consider a
    reproducible experimental setup covering\r\nseveral data sets."
article_processing_charge: No
arxiv: 1
author:
- first_name: Francesco
  full_name: Locatello, Francesco
  id: 26cfd52f-2483-11ee-8040-88983bcc06d4
  last_name: Locatello
  orcid: 0000-0002-4850-0683
- first_name: Stefan
  full_name: Bauer, Stefan
  last_name: Bauer
- first_name: Mario
  full_name: Lucic, Mario
  last_name: Lucic
- first_name: Gunnar
  full_name: Rätsch, Gunnar
  last_name: Rätsch
- first_name: Sylvain
  full_name: Gelly, Sylvain
  last_name: Gelly
- first_name: Bernhard
  full_name: Schölkopf, Bernhard
  last_name: Schölkopf
- first_name: Olivier
  full_name: Bachem, Olivier
  last_name: Bachem
citation:
  ama: 'Locatello F, Bauer S, Lucic M, et al. Challenging common assumptions in the
    unsupervised learning of disentangled representations. In: <i>Proceedings of the
    36th International Conference on Machine Learning</i>. Vol 97. ML Research Press;
    2019:4114-4124.'
  apa: 'Locatello, F., Bauer, S., Lucic, M., Rätsch, G., Gelly, S., Schölkopf, B.,
    &#38; Bachem, O. (2019). Challenging common assumptions in the unsupervised learning
    of disentangled representations. In <i>Proceedings of the 36th International Conference
    on Machine Learning</i> (Vol. 97, pp. 4114–4124). Long Beach, CA, United States:
    ML Research Press.'
  chicago: Locatello, Francesco, Stefan Bauer, Mario Lucic, Gunnar Rätsch, Sylvain
    Gelly, Bernhard Schölkopf, and Olivier Bachem. “Challenging Common Assumptions
    in the Unsupervised Learning of Disentangled Representations.” In <i>Proceedings
    of the 36th International Conference on Machine Learning</i>, 97:4114–24. ML Research
    Press, 2019.
  ieee: F. Locatello <i>et al.</i>, “Challenging common assumptions in the unsupervised
    learning of disentangled representations,” in <i>Proceedings of the 36th International
    Conference on Machine Learning</i>, Long Beach, CA, United States, 2019, vol.
    97, pp. 4114–4124.
  ista: Locatello F, Bauer S, Lucic M, Rätsch G, Gelly S, Schölkopf B, Bachem O. 2019.
    Challenging common assumptions in the unsupervised learning of disentangled representations.
    Proceedings of the 36th International Conference on Machine Learning. International
    Conference on Machine Learning vol. 97, 4114–4124.
  mla: Locatello, Francesco, et al. “Challenging Common Assumptions in the Unsupervised
    Learning of Disentangled Representations.” <i>Proceedings of the 36th International
    Conference on Machine Learning</i>, vol. 97, ML Research Press, 2019, pp. 4114–24.
  short: F. Locatello, S. Bauer, M. Lucic, G. Rätsch, S. Gelly, B. Schölkopf, O. Bachem,
    in:, Proceedings of the 36th International Conference on Machine Learning, ML
    Research Press, 2019, pp. 4114–4124.
conference:
  end_date: 2019-06-15
  location: Long Beach, CA, United States
  name: International Conference on Machine Learning
  start_date: 2019-06-10
date_created: 2023-08-22T14:13:08Z
date_published: 2019-06-09T00:00:00Z
date_updated: 2023-09-13T07:45:30Z
day: '09'
department:
- _id: FrLo
extern: '1'
external_id:
  arxiv:
  - '1811.12359'
intvolume: '        97'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1811.12359
month: '06'
oa: 1
oa_version: Preprint
page: 4114-4124
publication: Proceedings of the 36th International Conference on Machine Learning
publication_status: published
publisher: ML Research Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Challenging common assumptions in the unsupervised learning of disentangled
  representations
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2019'
...
---
_id: '5678'
abstract:
- lang: eng
  text: "The order-k Voronoi tessellation of a locally finite set \U0001D44B⊆ℝ\U0001D45B
    decomposes ℝ\U0001D45B into convex domains whose points have the same k nearest
    neighbors in X. Assuming X is a stationary Poisson point process, we give explicit
    formulas for the expected number and total area of faces of a given dimension
    per unit volume of space. We also develop a relaxed version of discrete Morse
    theory and generalize by counting only faces, for which the k nearest points in
    X are within a given distance threshold."
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Herbert
  full_name: Edelsbrunner, Herbert
  id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
  last_name: Edelsbrunner
  orcid: 0000-0002-9823-6833
- first_name: Anton
  full_name: Nikitenko, Anton
  id: 3E4FF1BA-F248-11E8-B48F-1D18A9856A87
  last_name: Nikitenko
  orcid: 0000-0002-0659-3201
citation:
  ama: Edelsbrunner H, Nikitenko A. Poisson–Delaunay Mosaics of Order k. <i>Discrete
    and Computational Geometry</i>. 2019;62(4):865–878. doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>
  apa: Edelsbrunner, H., &#38; Nikitenko, A. (2019). Poisson–Delaunay Mosaics of Order
    k. <i>Discrete and Computational Geometry</i>. Springer. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>
  chicago: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of
    Order K.” <i>Discrete and Computational Geometry</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00454-018-0049-2">https://doi.org/10.1007/s00454-018-0049-2</a>.
  ieee: H. Edelsbrunner and A. Nikitenko, “Poisson–Delaunay Mosaics of Order k,” <i>Discrete
    and Computational Geometry</i>, vol. 62, no. 4. Springer, pp. 865–878, 2019.
  ista: Edelsbrunner H, Nikitenko A. 2019. Poisson–Delaunay Mosaics of Order k. Discrete
    and Computational Geometry. 62(4), 865–878.
  mla: Edelsbrunner, Herbert, and Anton Nikitenko. “Poisson–Delaunay Mosaics of Order
    K.” <i>Discrete and Computational Geometry</i>, vol. 62, no. 4, Springer, 2019,
    pp. 865–878, doi:<a href="https://doi.org/10.1007/s00454-018-0049-2">10.1007/s00454-018-0049-2</a>.
  short: H. Edelsbrunner, A. Nikitenko, Discrete and Computational Geometry 62 (2019)
    865–878.
date_created: 2018-12-16T22:59:20Z
date_published: 2019-12-01T00:00:00Z
date_updated: 2023-09-07T12:07:12Z
day: '01'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.1007/s00454-018-0049-2
ec_funded: 1
external_id:
  arxiv:
  - '1709.09380'
  isi:
  - '000494042900008'
file:
- access_level: open_access
  checksum: f9d00e166efaccb5a76bbcbb4dcea3b4
  content_type: application/pdf
  creator: dernst
  date_created: 2019-02-06T10:10:46Z
  date_updated: 2020-07-14T12:47:10Z
  file_id: '5932'
  file_name: 2018_DiscreteCompGeometry_Edelsbrunner.pdf
  file_size: 599339
  relation: main_file
file_date_updated: 2020-07-14T12:47:10Z
has_accepted_license: '1'
intvolume: '        62'
isi: 1
issue: '4'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 865–878
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '788183'
  name: Alpha Shape Theory Extended
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: I02979-N35
  name: Persistence and stability of geometric complexes
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Discrete and Computational Geometry
publication_identifier:
  eissn:
  - '14320444'
  issn:
  - '01795376'
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
  record:
  - id: '6287'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Poisson–Delaunay Mosaics of Order k
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 62
year: '2019'
...
---
_id: '5680'
abstract:
- lang: eng
  text: Pollinators display a remarkable diversity of foraging strategies with flowering
    plants, from primarily mutualistic interactions to cheating through nectar robbery.
    Despite numerous studies on the effect of nectar robbing on components of plant
    fitness, its contribution to reproductive isolation is unclear. We experimentally
    tested the impact of different pollinator strategies in a natural hybrid zone
    between two subspecies of Antirrhinum majus with alternate flower colour guides.
    On either side of a steep cline in flower colour between Antirrhinum majus pseudomajus
    (magenta) and A. m. striatum (yellow), we quantified the behaviour of all floral
    visitors at different time points during the flowering season. Using long-run
    camera surveys, we quantify the impact of nectar robbing on the number of flowers
    visited per inflorescence and the flower probing time. We further experimentally
    tested the effect of nectar robbing on female reproductive success by manipulating
    the intensity of robbing. While robbing increased over time the number of legitimate
    visitors tended to decrease concomitantly. We found that the number of flowers
    pollinated on a focal inflorescence decreased with the number of prior robbing
    events. However, in the manipulative experiment, fruit set and fruit volume did
    not vary significantly between low robbing and control treatments. Our findings
    challenge the idea that robbers have a negative impact on plant fitness through
    female function. This study also adds to our understanding of the components of
    pollinator-mediated reproductive isolation and the maintenance of Antirrhinum
    hybrid zones.
article_processing_charge: No
author:
- first_name: Christophe
  full_name: Andalo, Christophe
  last_name: Andalo
- first_name: Monique
  full_name: Burrus, Monique
  last_name: Burrus
- first_name: Sandrine
  full_name: Paute, Sandrine
  last_name: Paute
- first_name: Christine
  full_name: Lauzeral, Christine
  last_name: Lauzeral
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
citation:
  ama: Andalo C, Burrus M, Paute S, Lauzeral C, Field D. Prevalence of legitimate
    pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum
    majus hybrid zone. <i>Botany Letters</i>. 2019;166(1):80-92. doi:<a href="https://doi.org/10.1080/23818107.2018.1545142">10.1080/23818107.2018.1545142</a>
  apa: Andalo, C., Burrus, M., Paute, S., Lauzeral, C., &#38; Field, D. (2019). Prevalence
    of legitimate pollinators and nectar robbers and the consequences for fruit set
    in an Antirrhinum majus hybrid zone. <i>Botany Letters</i>. Taylor and Francis.
    <a href="https://doi.org/10.1080/23818107.2018.1545142">https://doi.org/10.1080/23818107.2018.1545142</a>
  chicago: Andalo, Christophe, Monique Burrus, Sandrine Paute, Christine Lauzeral,
    and David Field. “Prevalence of Legitimate Pollinators and Nectar Robbers and
    the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.” <i>Botany
    Letters</i>. Taylor and Francis, 2019. <a href="https://doi.org/10.1080/23818107.2018.1545142">https://doi.org/10.1080/23818107.2018.1545142</a>.
  ieee: C. Andalo, M. Burrus, S. Paute, C. Lauzeral, and D. Field, “Prevalence of
    legitimate pollinators and nectar robbers and the consequences for fruit set in
    an Antirrhinum majus hybrid zone,” <i>Botany Letters</i>, vol. 166, no. 1. Taylor
    and Francis, pp. 80–92, 2019.
  ista: Andalo C, Burrus M, Paute S, Lauzeral C, Field D. 2019. Prevalence of legitimate
    pollinators and nectar robbers and the consequences for fruit set in an Antirrhinum
    majus hybrid zone. Botany Letters. 166(1), 80–92.
  mla: Andalo, Christophe, et al. “Prevalence of Legitimate Pollinators and Nectar
    Robbers and the Consequences for Fruit Set in an Antirrhinum Majus Hybrid Zone.”
    <i>Botany Letters</i>, vol. 166, no. 1, Taylor and Francis, 2019, pp. 80–92, doi:<a
    href="https://doi.org/10.1080/23818107.2018.1545142">10.1080/23818107.2018.1545142</a>.
  short: C. Andalo, M. Burrus, S. Paute, C. Lauzeral, D. Field, Botany Letters 166
    (2019) 80–92.
date_created: 2018-12-16T22:59:20Z
date_published: 2019-01-01T00:00:00Z
date_updated: 2023-08-24T14:34:12Z
day: '01'
department:
- _id: NiBa
doi: 10.1080/23818107.2018.1545142
external_id:
  isi:
  - '000463802800009'
intvolume: '       166'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa_version: None
page: 80-92
publication: Botany Letters
publication_identifier:
  eissn:
  - '23818115'
  issn:
  - '23818107'
publication_status: published
publisher: Taylor and Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Prevalence of legitimate pollinators and nectar robbers and the consequences
  for fruit set in an Antirrhinum majus hybrid zone
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 166
year: '2019'
...
---
_id: '5789'
abstract:
- lang: eng
  text: Tissue morphogenesis is driven by mechanical forces that elicit changes in
    cell size, shape and motion. The extent by which forces deform tissues critically
    depends on the rheological properties of the recipient tissue. Yet, whether and
    how dynamic changes in tissue rheology affect tissue morphogenesis and how they
    are regulated within the developing organism remain unclear. Here, we show that
    blastoderm spreading at the onset of zebrafish morphogenesis relies on a rapid,
    pronounced and spatially patterned tissue fluidization. Blastoderm fluidization
    is temporally controlled by mitotic cell rounding-dependent cell–cell contact
    disassembly during the last rounds of cell cleavages. Moreover, fluidization is
    spatially restricted to the central blastoderm by local activation of non-canonical
    Wnt signalling within the blastoderm margin, increasing cell cohesion and thereby
    counteracting the effect of mitotic rounding on contact disassembly. Overall,
    our results identify a fluidity transition mediated by loss of cell cohesion as
    a critical regulator of embryo morphogenesis.
acknowledged_ssus:
- _id: Bio
article_processing_charge: No
article_type: original
author:
- first_name: Nicoletta
  full_name: Petridou, Nicoletta
  id: 2A003F6C-F248-11E8-B48F-1D18A9856A87
  last_name: Petridou
  orcid: 0000-0002-8451-1195
- first_name: Silvia
  full_name: Grigolon, Silvia
  last_name: Grigolon
- first_name: Guillaume
  full_name: Salbreux, Guillaume
  last_name: Salbreux
- first_name: Edouard B
  full_name: Hannezo, Edouard B
  id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
  last_name: Hannezo
  orcid: 0000-0001-6005-1561
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. Fluidization-mediated
    tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. <i>Nature
    Cell Biology</i>. 2019;21:169–178. doi:<a href="https://doi.org/10.1038/s41556-018-0247-4">10.1038/s41556-018-0247-4</a>
  apa: Petridou, N., Grigolon, S., Salbreux, G., Hannezo, E. B., &#38; Heisenberg,
    C.-P. J. (2019). Fluidization-mediated tissue spreading by mitotic cell rounding
    and non-canonical Wnt signalling. <i>Nature Cell Biology</i>. Nature Publishing
    Group. <a href="https://doi.org/10.1038/s41556-018-0247-4">https://doi.org/10.1038/s41556-018-0247-4</a>
  chicago: Petridou, Nicoletta, Silvia Grigolon, Guillaume Salbreux, Edouard B Hannezo,
    and Carl-Philipp J Heisenberg. “Fluidization-Mediated Tissue Spreading by Mitotic
    Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>. Nature
    Publishing Group, 2019. <a href="https://doi.org/10.1038/s41556-018-0247-4">https://doi.org/10.1038/s41556-018-0247-4</a>.
  ieee: N. Petridou, S. Grigolon, G. Salbreux, E. B. Hannezo, and C.-P. J. Heisenberg,
    “Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical
    Wnt signalling,” <i>Nature Cell Biology</i>, vol. 21. Nature Publishing Group,
    pp. 169–178, 2019.
  ista: Petridou N, Grigolon S, Salbreux G, Hannezo EB, Heisenberg C-PJ. 2019. Fluidization-mediated
    tissue spreading by mitotic cell rounding and non-canonical Wnt signalling. Nature
    Cell Biology. 21, 169–178.
  mla: Petridou, Nicoletta, et al. “Fluidization-Mediated Tissue Spreading by Mitotic
    Cell Rounding and Non-Canonical Wnt Signalling.” <i>Nature Cell Biology</i>, vol.
    21, Nature Publishing Group, 2019, pp. 169–178, doi:<a href="https://doi.org/10.1038/s41556-018-0247-4">10.1038/s41556-018-0247-4</a>.
  short: N. Petridou, S. Grigolon, G. Salbreux, E.B. Hannezo, C.-P.J. Heisenberg,
    Nature Cell Biology 21 (2019) 169–178.
date_created: 2018-12-30T22:59:15Z
date_published: 2019-02-01T00:00:00Z
date_updated: 2023-09-11T14:03:28Z
day: '01'
ddc:
- '570'
department:
- _id: CaHe
- _id: EdHa
doi: 10.1038/s41556-018-0247-4
ec_funded: 1
external_id:
  isi:
  - '000457468300011'
  pmid:
  - '30559456'
file:
- access_level: open_access
  checksum: e38523787b3bc84006f2793de99ad70f
  content_type: application/pdf
  creator: dernst
  date_created: 2020-10-21T07:18:35Z
  date_updated: 2020-10-21T07:18:35Z
  file_id: '8685'
  file_name: 2018_NatureCellBio_Petridou_accepted.pdf
  file_size: 71590590
  relation: main_file
  success: 1
file_date_updated: 2020-10-21T07:18:35Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Submitted Version
page: 169–178
pmid: 1
project:
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
- _id: 253E54C8-B435-11E9-9278-68D0E5697425
  grant_number: ALTF710-2016
  name: Molecular mechanism of auxindriven formative divisions delineating lateral
    root organogenesis in plants (EMBO fellowship)
publication: Nature Cell Biology
publication_identifier:
  issn:
  - '14657392'
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/when-a-fish-becomes-fluid/
scopus_import: '1'
status: public
title: Fluidization-mediated tissue spreading by mitotic cell rounding and non-canonical
  Wnt signalling
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2019'
...
---
_id: '5790'
abstract:
- lang: eng
  text: The partial representation extension problem is a recently introduced generalization
    of the recognition problem. A circle graph is an intersection graph of chords
    of a circle. We study the partial representation extension problem for circle
    graphs, where the input consists of a graph G and a partial representation R′
    giving some predrawn chords that represent an induced subgraph of G. The question
    is whether one can extend R′ to a representation R of the entire graph G, that
    is, whether one can draw the remaining chords into a partially predrawn representation
    to obtain a representation of G. Our main result is an O(n3) time algorithm for
    partial representation extension of circle graphs, where n is the number of vertices.
    To show this, we describe the structure of all representations of a circle graph
    using split decomposition. This can be of independent interest.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Steven
  full_name: Chaplick, Steven
  last_name: Chaplick
- first_name: Radoslav
  full_name: Fulek, Radoslav
  id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
  last_name: Fulek
  orcid: 0000-0001-8485-1774
- first_name: Pavel
  full_name: Klavík, Pavel
  last_name: Klavík
citation:
  ama: Chaplick S, Fulek R, Klavík P. Extending partial representations of circle
    graphs. <i>Journal of Graph Theory</i>. 2019;91(4):365-394. doi:<a href="https://doi.org/10.1002/jgt.22436">10.1002/jgt.22436</a>
  apa: Chaplick, S., Fulek, R., &#38; Klavík, P. (2019). Extending partial representations
    of circle graphs. <i>Journal of Graph Theory</i>. Wiley. <a href="https://doi.org/10.1002/jgt.22436">https://doi.org/10.1002/jgt.22436</a>
  chicago: Chaplick, Steven, Radoslav Fulek, and Pavel Klavík. “Extending Partial
    Representations of Circle Graphs.” <i>Journal of Graph Theory</i>. Wiley, 2019.
    <a href="https://doi.org/10.1002/jgt.22436">https://doi.org/10.1002/jgt.22436</a>.
  ieee: S. Chaplick, R. Fulek, and P. Klavík, “Extending partial representations of
    circle graphs,” <i>Journal of Graph Theory</i>, vol. 91, no. 4. Wiley, pp. 365–394,
    2019.
  ista: Chaplick S, Fulek R, Klavík P. 2019. Extending partial representations of
    circle graphs. Journal of Graph Theory. 91(4), 365–394.
  mla: Chaplick, Steven, et al. “Extending Partial Representations of Circle Graphs.”
    <i>Journal of Graph Theory</i>, vol. 91, no. 4, Wiley, 2019, pp. 365–94, doi:<a
    href="https://doi.org/10.1002/jgt.22436">10.1002/jgt.22436</a>.
  short: S. Chaplick, R. Fulek, P. Klavík, Journal of Graph Theory 91 (2019) 365–394.
date_created: 2018-12-30T22:59:15Z
date_published: 2019-08-01T00:00:00Z
date_updated: 2023-08-24T14:30:43Z
day: '01'
department:
- _id: UlWa
doi: 10.1002/jgt.22436
ec_funded: 1
external_id:
  arxiv:
  - '1309.2399'
  isi:
  - '000485392800004'
intvolume: '        91'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1309.2399
month: '08'
oa: 1
oa_version: Preprint
page: 365-394
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
publication: Journal of Graph Theory
publication_identifier:
  issn:
  - '03649024'
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extending partial representations of circle graphs
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 91
year: '2019'
...
---
_id: '5793'
abstract:
- lang: eng
  text: The transcription coactivator, Yes-associated protein (YAP), which is a nuclear
    effector of the Hippo signaling pathway, has been shown to be a mechano-transducer.
    By using mutant fish and human 3D spheroids, we have recently demonstrated that
    YAP is also a mechano-effector. YAP functions in three-dimensional (3D) morphogenesis
    of organ and global body shape by controlling actomyosin-mediated tissue tension.
    In this chapter, we present a platform that links the findings in fish embryos
    with human cells. The protocols for analyzing tissue tension-mediated global body
    shape/organ morphogenesis in vivo and ex vivo using medaka fish embryos and in
    vitro using human cell spheroids represent useful tools for unraveling the molecular
    mechanisms by which YAP functions in regulating global body/organ morphogenesis.
alternative_title:
- MIMB
author:
- first_name: Yoichi
  full_name: Asaoka, Yoichi
  last_name: Asaoka
- first_name: Hitoshi
  full_name: Morita, Hitoshi
  last_name: Morita
- first_name: Hiroko
  full_name: Furumoto, Hiroko
  last_name: Furumoto
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
- first_name: Makoto
  full_name: Furutani-Seiki, Makoto
  last_name: Furutani-Seiki
citation:
  ama: 'Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. Studying
    YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: Hergovich
    A, ed. <i>The Hippo Pathway</i>. Vol 1893. Methods in Molecular Biology. Springer;
    2019:167-181. doi:<a href="https://doi.org/10.1007/978-1-4939-8910-2_14">10.1007/978-1-4939-8910-2_14</a>'
  apa: Asaoka, Y., Morita, H., Furumoto, H., Heisenberg, C.-P. J., &#38; Furutani-Seiki,
    M. (2019). Studying YAP-mediated 3D morphogenesis using fish embryos and human
    spheroids. In A. Hergovich (Ed.), <i>The hippo pathway</i> (Vol. 1893, pp. 167–181).
    Springer. <a href="https://doi.org/10.1007/978-1-4939-8910-2_14">https://doi.org/10.1007/978-1-4939-8910-2_14</a>
  chicago: Asaoka, Yoichi, Hitoshi Morita, Hiroko Furumoto, Carl-Philipp J Heisenberg,
    and Makoto Furutani-Seiki. “Studying YAP-Mediated 3D Morphogenesis Using Fish
    Embryos and Human Spheroids.” In <i>The Hippo Pathway</i>, edited by Alexander
    Hergovich, 1893:167–81. Methods in Molecular Biology. Springer, 2019. <a href="https://doi.org/10.1007/978-1-4939-8910-2_14">https://doi.org/10.1007/978-1-4939-8910-2_14</a>.
  ieee: Y. Asaoka, H. Morita, H. Furumoto, C.-P. J. Heisenberg, and M. Furutani-Seiki,
    “Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids,”
    in <i>The hippo pathway</i>, vol. 1893, A. Hergovich, Ed. Springer, 2019, pp.
    167–181.
  ista: 'Asaoka Y, Morita H, Furumoto H, Heisenberg C-PJ, Furutani-Seiki M. 2019.Studying
    YAP-mediated 3D morphogenesis using fish embryos and human spheroids. In: The
    hippo pathway. MIMB, vol. 1893, 167–181.'
  mla: Asaoka, Yoichi, et al. “Studying YAP-Mediated 3D Morphogenesis Using Fish Embryos
    and Human Spheroids.” <i>The Hippo Pathway</i>, edited by Alexander Hergovich,
    vol. 1893, Springer, 2019, pp. 167–81, doi:<a href="https://doi.org/10.1007/978-1-4939-8910-2_14">10.1007/978-1-4939-8910-2_14</a>.
  short: Y. Asaoka, H. Morita, H. Furumoto, C.-P.J. Heisenberg, M. Furutani-Seiki,
    in:, A. Hergovich (Ed.), The Hippo Pathway, Springer, 2019, pp. 167–181.
date_created: 2019-01-06T22:59:11Z
date_published: 2019-01-01T00:00:00Z
date_updated: 2021-01-12T08:03:30Z
day: '01'
department:
- _id: CaHe
doi: 10.1007/978-1-4939-8910-2_14
editor:
- first_name: Alexander
  full_name: Hergovich, Alexander
  last_name: Hergovich
intvolume: '      1893'
language:
- iso: eng
month: '01'
oa_version: None
page: 167-181
publication: The hippo pathway
publication_identifier:
  isbn:
  - 978-1-4939-8909-6
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: 1
series_title: Methods in Molecular Biology
status: public
title: Studying YAP-mediated 3D morphogenesis using fish embryos and human spheroids
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 1893
year: '2019'
...
---
_id: '5817'
abstract:
- lang: eng
  text: We theoretically study the shapes of lipid vesicles confined to a spherical
    cavity, elaborating a framework based on the so-called limiting shapes constructed
    from geometrically simple structural elements such as double-membrane walls and
    edges. Partly inspired by numerical results, the proposed non-compartmentalized
    and compartmentalized limiting shapes are arranged in the bilayer-couple phase
    diagram which is then compared to its free-vesicle counterpart. We also compute
    the area-difference-elasticity phase diagram of the limiting shapes and we use
    it to interpret shape transitions experimentally observed in vesicles confined
    within another vesicle. The limiting-shape framework may be generalized to theoretically
    investigate the structure of certain cell organelles such as the mitochondrion.
article_processing_charge: No
article_type: original
author:
- first_name: Bor
  full_name: Kavcic, Bor
  id: 350F91D2-F248-11E8-B48F-1D18A9856A87
  last_name: Kavcic
  orcid: 0000-0001-6041-254X
- first_name: A.
  full_name: Sakashita, A.
  last_name: Sakashita
- first_name: H.
  full_name: Noguchi, H.
  last_name: Noguchi
- first_name: P.
  full_name: Ziherl, P.
  last_name: Ziherl
citation:
  ama: Kavcic B, Sakashita A, Noguchi H, Ziherl P. Limiting shapes of confined lipid
    vesicles. <i>Soft Matter</i>. 2019;15(4):602-614. doi:<a href="https://doi.org/10.1039/c8sm01956h">10.1039/c8sm01956h</a>
  apa: Kavcic, B., Sakashita, A., Noguchi, H., &#38; Ziherl, P. (2019). Limiting shapes
    of confined lipid vesicles. <i>Soft Matter</i>. Royal Society of Chemistry. <a
    href="https://doi.org/10.1039/c8sm01956h">https://doi.org/10.1039/c8sm01956h</a>
  chicago: Kavcic, Bor, A. Sakashita, H. Noguchi, and P. Ziherl. “Limiting Shapes
    of Confined Lipid Vesicles.” <i>Soft Matter</i>. Royal Society of Chemistry, 2019.
    <a href="https://doi.org/10.1039/c8sm01956h">https://doi.org/10.1039/c8sm01956h</a>.
  ieee: B. Kavcic, A. Sakashita, H. Noguchi, and P. Ziherl, “Limiting shapes of confined
    lipid vesicles,” <i>Soft Matter</i>, vol. 15, no. 4. Royal Society of Chemistry,
    pp. 602–614, 2019.
  ista: Kavcic B, Sakashita A, Noguchi H, Ziherl P. 2019. Limiting shapes of confined
    lipid vesicles. Soft Matter. 15(4), 602–614.
  mla: Kavcic, Bor, et al. “Limiting Shapes of Confined Lipid Vesicles.” <i>Soft Matter</i>,
    vol. 15, no. 4, Royal Society of Chemistry, 2019, pp. 602–14, doi:<a href="https://doi.org/10.1039/c8sm01956h">10.1039/c8sm01956h</a>.
  short: B. Kavcic, A. Sakashita, H. Noguchi, P. Ziherl, Soft Matter 15 (2019) 602–614.
date_created: 2019-01-11T07:37:47Z
date_published: 2019-01-10T00:00:00Z
date_updated: 2023-09-13T08:47:16Z
day: '10'
ddc:
- '530'
department:
- _id: GaTk
doi: 10.1039/c8sm01956h
external_id:
  isi:
  - '000457329700003'
  pmid:
  - '30629082'
file:
- access_level: open_access
  checksum: 614c337d6424ccd3d48d1b1f9513510d
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  creator: bkavcic
  date_created: 2020-10-09T11:00:05Z
  date_updated: 2020-10-09T11:00:05Z
  file_id: '8641'
  file_name: lmt_sftmtr_V8.pdf
  file_size: 5370762
  relation: main_file
  success: 1
file_date_updated: 2020-10-09T11:00:05Z
has_accepted_license: '1'
intvolume: '        15'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/3.0/
month: '01'
oa: 1
oa_version: Submitted Version
page: 602-614
pmid: 1
publication: Soft Matter
publication_identifier:
  eissn:
  - 1744-6848
  issn:
  - 1744-683X
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: Limiting shapes of confined lipid vesicles
tmp:
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  name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND
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  short: CC BY-NC-ND (3.0)
type: journal_article
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volume: 15
year: '2019'
...
---
_id: '5828'
abstract:
- lang: eng
  text: Hippocampus is needed for both spatial working and reference memories. Here,
    using a radial eight-arm maze, we examined how the combined demand on these memories
    influenced CA1 place cell assemblies while reference memories were partially updated.
    This was contrasted with control tasks requiring only working memory or the update
    of reference memory. Reference memory update led to the reward-directed place
    field shifts at newly rewarded arms and to the gradual strengthening of firing
    in passes between newly rewarded arms but not between those passes that included
    a familiar-rewarded arm. At the maze center, transient network synchronization
    periods preferentially replayed trajectories of the next chosen arm in reference
    memory tasks but the previously visited arm in the working memory task. Hence,
    reference memory demand was uniquely associated with a gradual, goal novelty-related
    reorganization of place cell assemblies and with trajectory replay that reflected
    the animal's decision of which arm to visit next.
article_processing_charge: No
article_type: original
author:
- first_name: Haibing
  full_name: Xu, Haibing
  id: 310349D0-F248-11E8-B48F-1D18A9856A87
  last_name: Xu
- first_name: Peter
  full_name: Baracskay, Peter
  id: 361CC00E-F248-11E8-B48F-1D18A9856A87
  last_name: Baracskay
- first_name: Joseph
  full_name: O'Neill, Joseph
  id: 426376DC-F248-11E8-B48F-1D18A9856A87
  last_name: O'Neill
- first_name: Jozsef L
  full_name: Csicsvari, Jozsef L
  id: 3FA14672-F248-11E8-B48F-1D18A9856A87
  last_name: Csicsvari
  orcid: 0000-0002-5193-4036
citation:
  ama: Xu H, Baracskay P, O’Neill J, Csicsvari JL. Assembly responses of hippocampal
    CA1 place cells predict learned behavior in goal-directed spatial tasks on the
    radial eight-arm maze. <i>Neuron</i>. 2019;101(1):119-132.e4. doi:<a href="https://doi.org/10.1016/j.neuron.2018.11.015">10.1016/j.neuron.2018.11.015</a>
  apa: Xu, H., Baracskay, P., O’Neill, J., &#38; Csicsvari, J. L. (2019). Assembly
    responses of hippocampal CA1 place cells predict learned behavior in goal-directed
    spatial tasks on the radial eight-arm maze. <i>Neuron</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuron.2018.11.015">https://doi.org/10.1016/j.neuron.2018.11.015</a>
  chicago: Xu, Haibing, Peter Baracskay, Joseph O’Neill, and Jozsef L Csicsvari. “Assembly
    Responses of Hippocampal CA1 Place Cells Predict Learned Behavior in Goal-Directed
    Spatial Tasks on the Radial Eight-Arm Maze.” <i>Neuron</i>. Elsevier, 2019. <a
    href="https://doi.org/10.1016/j.neuron.2018.11.015">https://doi.org/10.1016/j.neuron.2018.11.015</a>.
  ieee: H. Xu, P. Baracskay, J. O’Neill, and J. L. Csicsvari, “Assembly responses
    of hippocampal CA1 place cells predict learned behavior in goal-directed spatial
    tasks on the radial eight-arm maze,” <i>Neuron</i>, vol. 101, no. 1. Elsevier,
    p. 119–132.e4, 2019.
  ista: Xu H, Baracskay P, O’Neill J, Csicsvari JL. 2019. Assembly responses of hippocampal
    CA1 place cells predict learned behavior in goal-directed spatial tasks on the
    radial eight-arm maze. Neuron. 101(1), 119–132.e4.
  mla: Xu, Haibing, et al. “Assembly Responses of Hippocampal CA1 Place Cells Predict
    Learned Behavior in Goal-Directed Spatial Tasks on the Radial Eight-Arm Maze.”
    <i>Neuron</i>, vol. 101, no. 1, Elsevier, 2019, p. 119–132.e4, doi:<a href="https://doi.org/10.1016/j.neuron.2018.11.015">10.1016/j.neuron.2018.11.015</a>.
  short: H. Xu, P. Baracskay, J. O’Neill, J.L. Csicsvari, Neuron 101 (2019) 119–132.e4.
date_created: 2019-01-13T22:59:10Z
date_published: 2019-01-02T00:00:00Z
date_updated: 2023-09-07T12:06:37Z
day: '02'
department:
- _id: JoCs
doi: 10.1016/j.neuron.2018.11.015
ec_funded: 1
external_id:
  isi:
  - '000454791500014'
intvolume: '       101'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://www.doi.org/10.1016/j.neuron.2018.11.015
month: '01'
oa: 1
oa_version: Published Version
page: 119-132.e4
project:
- _id: 257A4776-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '281511'
  name: Memory-related information processing in neuronal circuits of the hippocampus
    and entorhinal cortex
publication: Neuron
publication_identifier:
  issn:
  - '10974199'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
  link:
  - description: News on IST Homepage
    relation: press_release
    url: https://ist.ac.at/en/news/reading-rats-minds/
  record:
  - id: '837'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Assembly responses of hippocampal CA1 place cells predict learned behavior
  in goal-directed spatial tasks on the radial eight-arm maze
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 101
year: '2019'
...
---
_id: '5856'
abstract:
- lang: eng
  text: We give a bound on the ground-state energy of a system of N non-interacting
    fermions in a three-dimensional cubic box interacting with an impurity particle
    via point interactions. We show that the change in energy compared to the system
    in the absence of the impurity is bounded in terms of the gas density and the
    scattering length of the interaction, independently of N. Our bound holds as long
    as the ratio of the mass of the impurity to the one of the gas particles is larger
    than a critical value m∗ ∗≈ 0.36 , which is the same regime for which we recently
    showed stability of the system.
article_processing_charge: Yes (via OA deal)
article_type: original
arxiv: 1
author:
- first_name: Thomas
  full_name: Moser, Thomas
  id: 2B5FC9A4-F248-11E8-B48F-1D18A9856A87
  last_name: Moser
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Moser T, Seiringer R. Energy contribution of a point-interacting impurity in
    a Fermi gas. <i>Annales Henri Poincare</i>. 2019;20(4):1325–1365. doi:<a href="https://doi.org/10.1007/s00023-018-00757-0">10.1007/s00023-018-00757-0</a>
  apa: Moser, T., &#38; Seiringer, R. (2019). Energy contribution of a point-interacting
    impurity in a Fermi gas. <i>Annales Henri Poincare</i>. Springer. <a href="https://doi.org/10.1007/s00023-018-00757-0">https://doi.org/10.1007/s00023-018-00757-0</a>
  chicago: Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting
    Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>. Springer, 2019. <a href="https://doi.org/10.1007/s00023-018-00757-0">https://doi.org/10.1007/s00023-018-00757-0</a>.
  ieee: T. Moser and R. Seiringer, “Energy contribution of a point-interacting impurity
    in a Fermi gas,” <i>Annales Henri Poincare</i>, vol. 20, no. 4. Springer, pp.
    1325–1365, 2019.
  ista: Moser T, Seiringer R. 2019. Energy contribution of a point-interacting impurity
    in a Fermi gas. Annales Henri Poincare. 20(4), 1325–1365.
  mla: Moser, Thomas, and Robert Seiringer. “Energy Contribution of a Point-Interacting
    Impurity in a Fermi Gas.” <i>Annales Henri Poincare</i>, vol. 20, no. 4, Springer,
    2019, pp. 1325–1365, doi:<a href="https://doi.org/10.1007/s00023-018-00757-0">10.1007/s00023-018-00757-0</a>.
  short: T. Moser, R. Seiringer, Annales Henri Poincare 20 (2019) 1325–1365.
date_created: 2019-01-20T22:59:17Z
date_published: 2019-04-01T00:00:00Z
date_updated: 2023-09-07T12:37:42Z
day: '01'
ddc:
- '530'
department:
- _id: RoSe
doi: 10.1007/s00023-018-00757-0
ec_funded: 1
external_id:
  arxiv:
  - '1807.00739'
  isi:
  - '000462444300008'
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  file_size: 859846
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file_date_updated: 2020-07-14T12:47:12Z
has_accepted_license: '1'
intvolume: '        20'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 1325–1365
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P27533_N27
  name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Annales Henri Poincare
publication_identifier:
  issn:
  - '14240637'
publication_status: published
publisher: Springer
quality_controlled: '1'
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    status: public
scopus_import: '1'
status: public
title: Energy contribution of a point-interacting impurity in a Fermi gas
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...
