---
_id: '9632'
abstract:
- lang: eng
  text: "Second-order information, in the form of Hessian- or Inverse-Hessian-vector
    products, is a fundamental tool for solving optimization problems. Recently, there
    has been significant interest in utilizing this information in the context of
    deep\r\nneural networks; however, relatively little is known about the quality
    of existing approximations in this context. Our work examines this question, identifies
    issues with existing approaches, and proposes a method called WoodFisher to compute
    a faithful and efficient estimate of the inverse Hessian. Our main application
    is to neural network compression, where we build on the classic Optimal Brain
    Damage/Surgeon framework. We demonstrate that WoodFisher significantly outperforms
    popular state-of-the-art methods for oneshot pruning. Further, even when iterative,
    gradual pruning is allowed, our method results in a gain in test accuracy over
    the state-of-the-art approaches, for standard image classification datasets such
    as ImageNet ILSVRC. We examine how our method can be extended to take into account
    first-order information, as well as\r\nillustrate its ability to automatically
    set layer-wise pruning thresholds and perform compression in the limited-data
    regime. The code is available at the following link, https://github.com/IST-DASLab/WoodFisher."
acknowledgement: This project has received funding from the European Research Council
  (ERC) under the European Union’s Horizon 2020 research and innovation programme
  (grant agreement No 805223 ScaleML). Also, we would like to thank Alexander Shevchenko,
  Alexandra Peste, and other members of the group for fruitful discussions.
article_processing_charge: No
arxiv: 1
author:
- first_name: Sidak Pal
  full_name: Singh, Sidak Pal
  id: DD138E24-D89D-11E9-9DC0-DEF6E5697425
  last_name: Singh
- first_name: Dan-Adrian
  full_name: Alistarh, Dan-Adrian
  id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
  last_name: Alistarh
  orcid: 0000-0003-3650-940X
citation:
  ama: 'Singh SP, Alistarh D-A. WoodFisher: Efficient second-order approximation for
    neural network compression. In: <i>Advances in Neural Information Processing Systems</i>.
    Vol 33. Curran Associates; 2020:18098-18109.'
  apa: 'Singh, S. P., &#38; Alistarh, D.-A. (2020). WoodFisher: Efficient second-order
    approximation for neural network compression. In <i>Advances in Neural Information
    Processing Systems</i> (Vol. 33, pp. 18098–18109). Vancouver, Canada: Curran Associates.'
  chicago: 'Singh, Sidak Pal, and Dan-Adrian Alistarh. “WoodFisher: Efficient Second-Order
    Approximation for Neural Network Compression.” In <i>Advances in Neural Information
    Processing Systems</i>, 33:18098–109. Curran Associates, 2020.'
  ieee: 'S. P. Singh and D.-A. Alistarh, “WoodFisher: Efficient second-order approximation
    for neural network compression,” in <i>Advances in Neural Information Processing
    Systems</i>, Vancouver, Canada, 2020, vol. 33, pp. 18098–18109.'
  ista: 'Singh SP, Alistarh D-A. 2020. WoodFisher: Efficient second-order approximation
    for neural network compression. Advances in Neural Information Processing Systems.
    NeurIPS: Conference on Neural Information Processing Systems vol. 33, 18098–18109.'
  mla: 'Singh, Sidak Pal, and Dan-Adrian Alistarh. “WoodFisher: Efficient Second-Order
    Approximation for Neural Network Compression.” <i>Advances in Neural Information
    Processing Systems</i>, vol. 33, Curran Associates, 2020, pp. 18098–109.'
  short: S.P. Singh, D.-A. Alistarh, in:, Advances in Neural Information Processing
    Systems, Curran Associates, 2020, pp. 18098–18109.
conference:
  end_date: 2020-12-12
  location: Vancouver, Canada
  name: 'NeurIPS: Conference on Neural Information Processing Systems'
  start_date: 2020-12-06
date_created: 2021-07-04T22:01:26Z
date_published: 2020-12-06T00:00:00Z
date_updated: 2023-02-23T14:03:06Z
day: '06'
department:
- _id: DaAl
- _id: ToHe
ec_funded: 1
external_id:
  arxiv:
  - '2004.14340'
intvolume: '        33'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2020/hash/d1ff1ec86b62cd5f3903ff19c3a326b2-Abstract.html
month: '12'
oa: 1
oa_version: Published Version
page: 18098-18109
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '805223'
  name: Elastic Coordination for Scalable Machine Learning
publication: Advances in Neural Information Processing Systems
publication_identifier:
  isbn:
  - '9781713829546'
  issn:
  - '10495258'
publication_status: published
publisher: Curran Associates
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'WoodFisher: Efficient second-order approximation for neural network compression'
type: conference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 33
year: '2020'
...
---
_id: '9633'
abstract:
- lang: eng
  text: The search for biologically faithful synaptic plasticity rules has resulted
    in a large body of models. They are usually inspired by – and fitted to – experimental
    data, but they rarely produce neural dynamics that serve complex functions. These
    failures suggest that current plasticity models are still under-constrained by
    existing data. Here, we present an alternative approach that uses meta-learning
    to discover plausible synaptic plasticity rules. Instead of experimental data,
    the rules are constrained by the functions they implement and the structure they
    are meant to produce. Briefly, we parameterize synaptic plasticity rules by a
    Volterra expansion and then use supervised learning methods (gradient descent
    or evolutionary strategies) to minimize a problem-dependent loss function that
    quantifies how effectively a candidate plasticity rule transforms an initially
    random network into one with the desired function. We first validate our approach
    by re-discovering previously described plasticity rules, starting at the single-neuron
    level and “Oja’s rule”, a simple Hebbian plasticity rule that captures the direction
    of most variability of inputs to a neuron (i.e., the first principal component).
    We expand the problem to the network level and ask the framework to find Oja’s
    rule together with an anti-Hebbian rule such that an initially random two-layer
    firing-rate network will recover several principal components of the input space
    after learning. Next, we move to networks of integrate-and-fire neurons with plastic
    inhibitory afferents. We train for rules that achieve a target firing rate by
    countering tuned excitation. Our algorithm discovers a specific subset of the
    manifold of rules that can solve this task. Our work is a proof of principle of
    an automated and unbiased approach to unveil synaptic plasticity rules that obey
    biological constraints and can solve complex functions.
acknowledgement: We would like to thank Chaitanya Chintaluri, Georgia Christodoulou,
  Bill Podlaski and Merima Šabanovic for useful discussions and comments. This work
  was supported by a Wellcome Trust ´ Senior Research Fellowship (214316/Z/18/Z),
  a BBSRC grant (BB/N019512/1), an ERC consolidator Grant (SYNAPSEEK), a Leverhulme
  Trust Project Grant (RPG-2016-446), and funding from École Polytechnique, Paris.
article_processing_charge: No
author:
- first_name: Basile J
  full_name: Confavreux, Basile J
  id: C7610134-B532-11EA-BD9F-F5753DDC885E
  last_name: Confavreux
- first_name: Friedemann
  full_name: Zenke, Friedemann
  last_name: Zenke
- first_name: Everton J.
  full_name: Agnes, Everton J.
  last_name: Agnes
- first_name: Timothy
  full_name: Lillicrap, Timothy
  last_name: Lillicrap
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
citation:
  ama: 'Confavreux BJ, Zenke F, Agnes EJ, Lillicrap T, Vogels TP. A meta-learning
    approach to (re)discover plasticity rules that carve a desired function into a
    neural network. In: <i>Advances in Neural Information Processing Systems</i>.
    Vol 33. ; 2020:16398-16408.'
  apa: Confavreux, B. J., Zenke, F., Agnes, E. J., Lillicrap, T., &#38; Vogels, T.
    P. (2020). A meta-learning approach to (re)discover plasticity rules that carve
    a desired function into a neural network. In <i>Advances in Neural Information
    Processing Systems</i> (Vol. 33, pp. 16398–16408). Vancouver, Canada.
  chicago: Confavreux, Basile J, Friedemann Zenke, Everton J. Agnes, Timothy Lillicrap,
    and Tim P Vogels. “A Meta-Learning Approach to (Re)Discover Plasticity Rules That
    Carve a Desired Function into a Neural Network.” In <i>Advances in Neural Information
    Processing Systems</i>, 33:16398–408, 2020.
  ieee: B. J. Confavreux, F. Zenke, E. J. Agnes, T. Lillicrap, and T. P. Vogels, “A
    meta-learning approach to (re)discover plasticity rules that carve a desired function
    into a neural network,” in <i>Advances in Neural Information Processing Systems</i>,
    Vancouver, Canada, 2020, vol. 33, pp. 16398–16408.
  ista: 'Confavreux BJ, Zenke F, Agnes EJ, Lillicrap T, Vogels TP. 2020. A meta-learning
    approach to (re)discover plasticity rules that carve a desired function into a
    neural network. Advances in Neural Information Processing Systems. NeurIPS: Conference
    on Neural Information Processing Systems vol. 33, 16398–16408.'
  mla: Confavreux, Basile J., et al. “A Meta-Learning Approach to (Re)Discover Plasticity
    Rules That Carve a Desired Function into a Neural Network.” <i>Advances in Neural
    Information Processing Systems</i>, vol. 33, 2020, pp. 16398–408.
  short: B.J. Confavreux, F. Zenke, E.J. Agnes, T. Lillicrap, T.P. Vogels, in:, Advances
    in Neural Information Processing Systems, 2020, pp. 16398–16408.
conference:
  end_date: 2020-12-12
  location: Vancouver, Canada
  name: 'NeurIPS: Conference on Neural Information Processing Systems'
  start_date: 2020-12-06
date_created: 2021-07-04T22:01:27Z
date_published: 2020-12-06T00:00:00Z
date_updated: 2023-10-18T09:20:55Z
day: '06'
department:
- _id: TiVo
ec_funded: 1
intvolume: '        33'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://proceedings.neurips.cc/paper/2020/hash/bdbd5ebfde4934142c8a88e7a3796cd5-Abstract.html
month: '12'
oa: 1
oa_version: Published Version
page: 16398-16408
project:
- _id: c084a126-5a5b-11eb-8a69-d75314a70a87
  grant_number: 214316/Z/18/Z
  name: What’s in a memory? Spatiotemporal dynamics in strongly coupled recurrent
    neuronal networks.
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
  call_identifier: H2020
  grant_number: '819603'
  name: Learning the shape of synaptic plasticity rules for neuronal architectures
    and function through machine learning.
publication: Advances in Neural Information Processing Systems
publication_identifier:
  issn:
  - 1049-5258
publication_status: published
quality_controlled: '1'
related_material:
  link:
  - relation: is_continued_by
    url: https://doi.org/10.1101/2020.10.24.353409
  record:
  - id: '14422'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: A meta-learning approach to (re)discover plasticity rules that carve a desired
  function into a neural network
type: conference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 33
year: '2020'
...
---
_id: '9706'
abstract:
- lang: eng
  text: 'Additional file 2: Supplementary Tables. The association of pre-adjusted
    protein levels with biological and technical covariates. Protein levels were adjusted
    for age, sex, array plate and four genetic principal components (population structure)
    prior to analyses. Significant associations are emboldened. (Table S1). pQTLs
    associated with inflammatory biomarker levels from Bayesian penalised regression
    model (Posterior Inclusion Probability > 95%). (Table S2). All pQTLs associated
    with inflammatory biomarker levels from ordinary least squares regression model
    (P < 7.14 × 10− 10). (Table S3). Summary of lambda values relating to ordinary
    least squares GWAS and EWAS performed on inflammatory protein levels (n = 70)
    in Lothian Birth Cohort 1936 study. (Table S4). Conditionally significant pQTLs
    associated with inflammatory biomarker levels from ordinary least squares regression
    model (P < 7.14 × 10− 10). (Table S5). Comparison of variance explained by ordinary
    least squares and Bayesian penalised regression models for concordantly identified
    SNPs. (Table S6). Estimate of heritability for blood protein levels as well as
    proportion of variance explained attributable to different prior mixtures. (Table
    S7). Comparison of heritability estimates from Ahsan et al. (maximum likelihood)
    and Hillary et al. (Bayesian penalised regression). (Table S8). List of concordant
    SNPs identified by linear model and Bayesian penalised regression and whether
    they have been previously identified as eQTLs. (Table S9). Bayesian tests of colocalisation
    for cis pQTLs and cis eQTLs. (Table S10). Sherlock algorithm: Genes whose expression
    are putatively associated with circulating inflammatory proteins that harbour
    pQTLs. (Table S11). CpGs associated with inflammatory protein biomarkers as identified
    by Bayesian model (Bayesian model; Posterior Inclusion Probability > 95%). (Table
    S12). CpGs associated with inflammatory protein biomarkers as identified by linear
    model (limma) at P < 5.14 × 10− 10. (Table S13). CpGs associated with inflammatory
    protein biomarkers as identified by mixed linear model (OSCA) at P < 5.14 × 10− 10.
    (Table S14). Estimate of variance explained for blood protein levels by DNA methylation
    as well as proportion of explained attributable to different prior mixtures -
    BayesR+. (Table S15). Comparison of variance in protein levels explained by genome-wide
    DNA methylation data by mixed linear model (OSCA) and Bayesian penalised regression
    model (BayesR+). (Table S16). Variance in circulating inflammatory protein biomarker
    levels explained by common genetic and methylation data (joint and conditional
    estimates from BayesR+). Ordered by combined variance explained by genetic and
    epigenetic data - smallest to largest. Significant results from t-tests comparing
    distributions for variance explained by methylation or genetics alone versus combined
    estimate are emboldened. (Table S17). Genetic and epigenetic factors identified
    by BayesR+ when conditioning on all SNPs and CpGs together. (Table S18). Mendelian
    Randomisation analyses to assess whether proteins with concordantly identified
    genetic signals are causally associated with Alzheimer’s disease risk. (Table
    S19).'
article_processing_charge: No
author:
- first_name: Robert F.
  full_name: Hillary, Robert F.
  last_name: Hillary
- first_name: Daniel
  full_name: Trejo-Banos, Daniel
  last_name: Trejo-Banos
- first_name: Athanasios
  full_name: Kousathanas, Athanasios
  last_name: Kousathanas
- first_name: Daniel L.
  full_name: McCartney, Daniel L.
  last_name: McCartney
- first_name: Sarah E.
  full_name: Harris, Sarah E.
  last_name: Harris
- first_name: Anna J.
  full_name: Stevenson, Anna J.
  last_name: Stevenson
- first_name: Marion
  full_name: Patxot, Marion
  last_name: Patxot
- first_name: Sven Erik
  full_name: Ojavee, Sven Erik
  last_name: Ojavee
- first_name: Qian
  full_name: Zhang, Qian
  last_name: Zhang
- first_name: David C.
  full_name: Liewald, David C.
  last_name: Liewald
- first_name: Craig W.
  full_name: Ritchie, Craig W.
  last_name: Ritchie
- first_name: Kathryn L.
  full_name: Evans, Kathryn L.
  last_name: Evans
- first_name: Elliot M.
  full_name: Tucker-Drob, Elliot M.
  last_name: Tucker-Drob
- first_name: Naomi R.
  full_name: Wray, Naomi R.
  last_name: Wray
- first_name: 'Allan F. '
  full_name: 'McRae, Allan F. '
  last_name: McRae
- first_name: Peter M.
  full_name: Visscher, Peter M.
  last_name: Visscher
- first_name: Ian J.
  full_name: Deary, Ian J.
  last_name: Deary
- first_name: Matthew Richard
  full_name: Robinson, Matthew Richard
  id: E5D42276-F5DA-11E9-8E24-6303E6697425
  last_name: Robinson
  orcid: 0000-0001-8982-8813
- first_name: 'Riccardo E. '
  full_name: 'Marioni, Riccardo E. '
  last_name: Marioni
citation:
  ama: Hillary RF, Trejo-Banos D, Kousathanas A, et al. Additional file 2 of multi-method
    genome- and epigenome-wide studies of inflammatory protein levels in healthy older
    adults. 2020. doi:<a href="https://doi.org/10.6084/m9.figshare.12629697.v1">10.6084/m9.figshare.12629697.v1</a>
  apa: Hillary, R. F., Trejo-Banos, D., Kousathanas, A., McCartney, D. L., Harris,
    S. E., Stevenson, A. J., … Marioni, R. E. (2020). Additional file 2 of multi-method
    genome- and epigenome-wide studies of inflammatory protein levels in healthy older
    adults. Springer Nature. <a href="https://doi.org/10.6084/m9.figshare.12629697.v1">https://doi.org/10.6084/m9.figshare.12629697.v1</a>
  chicago: Hillary, Robert F., Daniel Trejo-Banos, Athanasios Kousathanas, Daniel
    L. McCartney, Sarah E. Harris, Anna J. Stevenson, Marion Patxot, et al. “Additional
    File 2 of Multi-Method Genome- and Epigenome-Wide Studies of Inflammatory Protein
    Levels in Healthy Older Adults.” Springer Nature, 2020. <a href="https://doi.org/10.6084/m9.figshare.12629697.v1">https://doi.org/10.6084/m9.figshare.12629697.v1</a>.
  ieee: R. F. Hillary <i>et al.</i>, “Additional file 2 of multi-method genome- and
    epigenome-wide studies of inflammatory protein levels in healthy older adults.”
    Springer Nature, 2020.
  ista: Hillary RF, Trejo-Banos D, Kousathanas A, McCartney DL, Harris SE, Stevenson
    AJ, Patxot M, Ojavee SE, Zhang Q, Liewald DC, Ritchie CW, Evans KL, Tucker-Drob
    EM, Wray NR, McRae AF, Visscher PM, Deary IJ, Robinson MR, Marioni RE. 2020. Additional
    file 2 of multi-method genome- and epigenome-wide studies of inflammatory protein
    levels in healthy older adults, Springer Nature, <a href="https://doi.org/10.6084/m9.figshare.12629697.v1">10.6084/m9.figshare.12629697.v1</a>.
  mla: Hillary, Robert F., et al. <i>Additional File 2 of Multi-Method Genome- and
    Epigenome-Wide Studies of Inflammatory Protein Levels in Healthy Older Adults</i>.
    Springer Nature, 2020, doi:<a href="https://doi.org/10.6084/m9.figshare.12629697.v1">10.6084/m9.figshare.12629697.v1</a>.
  short: R.F. Hillary, D. Trejo-Banos, A. Kousathanas, D.L. McCartney, S.E. Harris,
    A.J. Stevenson, M. Patxot, S.E. Ojavee, Q. Zhang, D.C. Liewald, C.W. Ritchie,
    K.L. Evans, E.M. Tucker-Drob, N.R. Wray, A.F. McRae, P.M. Visscher, I.J. Deary,
    M.R. Robinson, R.E. Marioni, (2020).
date_created: 2021-07-23T08:59:15Z
date_published: 2020-07-09T00:00:00Z
date_updated: 2023-08-22T07:55:36Z
day: '09'
department:
- _id: MaRo
doi: 10.6084/m9.figshare.12629697.v1
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.12629697.v1
month: '07'
oa: 1
oa_version: Published Version
other_data_license: CC0 + CC BY (4.0)
publisher: Springer Nature
related_material:
  record:
  - id: '8133'
    relation: used_in_publication
    status: public
status: public
title: Additional file 2 of multi-method genome- and epigenome-wide studies of inflammatory
  protein levels in healthy older adults
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9708'
abstract:
- lang: eng
  text: This research data supports 'Hard antinodal gap revealed by quantum oscillations
    in the pseudogap regime of underdoped high-Tc superconductors'. A Readme file
    for plotting each figure is provided.
article_processing_charge: No
author:
- first_name: Mate
  full_name: Hartstein, Mate
  last_name: Hartstein
- first_name: Yu-Te
  full_name: Hsu, Yu-Te
  last_name: Hsu
- first_name: Kimberly A
  full_name: Modic, Kimberly A
  id: 13C26AC0-EB69-11E9-87C6-5F3BE6697425
  last_name: Modic
  orcid: 0000-0001-9760-3147
- first_name: Juan
  full_name: Porras, Juan
  last_name: Porras
- first_name: Toshinao
  full_name: Loew, Toshinao
  last_name: Loew
- first_name: Matthieu
  full_name: Le Tacon, Matthieu
  last_name: Le Tacon
- first_name: Huakun
  full_name: Zuo, Huakun
  last_name: Zuo
- first_name: Jinhua
  full_name: Wang, Jinhua
  last_name: Wang
- first_name: Zengwei
  full_name: Zhu, Zengwei
  last_name: Zhu
- first_name: Mun
  full_name: Chan, Mun
  last_name: Chan
- first_name: Ross
  full_name: McDonald, Ross
  last_name: McDonald
- first_name: Gilbert
  full_name: Lonzarich, Gilbert
  last_name: Lonzarich
- first_name: Bernhard
  full_name: Keimer, Bernhard
  last_name: Keimer
- first_name: Suchitra
  full_name: Sebastian, Suchitra
  last_name: Sebastian
- first_name: Neil
  full_name: Harrison, Neil
  last_name: Harrison
citation:
  ama: Hartstein M, Hsu Y-T, Modic KA, et al. Accompanying dataset for “Hard antinodal
    gap revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc
    superconductors.” 2020. doi:<a href="https://doi.org/10.17863/cam.50169">10.17863/cam.50169</a>
  apa: Hartstein, M., Hsu, Y.-T., Modic, K. A., Porras, J., Loew, T., Le Tacon, M.,
    … Harrison, N. (2020). Accompanying dataset for “Hard antinodal gap revealed by
    quantum oscillations in the pseudogap regime of underdoped high-Tc superconductors.”
    Apollo - University of Cambridge. <a href="https://doi.org/10.17863/cam.50169">https://doi.org/10.17863/cam.50169</a>
  chicago: Hartstein, Mate, Yu-Te Hsu, Kimberly A Modic, Juan Porras, Toshinao Loew,
    Matthieu Le Tacon, Huakun Zuo, et al. “Accompanying Dataset for ‘Hard Antinodal
    Gap Revealed by Quantum Oscillations in the Pseudogap Regime of Underdoped High-Tc
    Superconductors.’” Apollo - University of Cambridge, 2020. <a href="https://doi.org/10.17863/cam.50169">https://doi.org/10.17863/cam.50169</a>.
  ieee: M. Hartstein <i>et al.</i>, “Accompanying dataset for ‘Hard antinodal gap
    revealed by quantum oscillations in the pseudogap regime of underdoped high-Tc
    superconductors.’” Apollo - University of Cambridge, 2020.
  ista: Hartstein M, Hsu Y-T, Modic KA, Porras J, Loew T, Le Tacon M, Zuo H, Wang
    J, Zhu Z, Chan M, McDonald R, Lonzarich G, Keimer B, Sebastian S, Harrison N.
    2020. Accompanying dataset for ‘Hard antinodal gap revealed by quantum oscillations
    in the pseudogap regime of underdoped high-Tc superconductors’, Apollo - University
    of Cambridge, <a href="https://doi.org/10.17863/cam.50169">10.17863/cam.50169</a>.
  mla: Hartstein, Mate, et al. <i>Accompanying Dataset for “Hard Antinodal Gap Revealed
    by Quantum Oscillations in the Pseudogap Regime of Underdoped High-Tc Superconductors.”</i>
    Apollo - University of Cambridge, 2020, doi:<a href="https://doi.org/10.17863/cam.50169">10.17863/cam.50169</a>.
  short: M. Hartstein, Y.-T. Hsu, K.A. Modic, J. Porras, T. Loew, M. Le Tacon, H.
    Zuo, J. Wang, Z. Zhu, M. Chan, R. McDonald, G. Lonzarich, B. Keimer, S. Sebastian,
    N. Harrison, (2020).
date_created: 2021-07-23T10:00:35Z
date_published: 2020-05-29T00:00:00Z
date_updated: 2023-08-21T07:06:48Z
day: '29'
department:
- _id: KiMo
doi: 10.17863/cam.50169
has_accepted_license: '1'
main_file_link:
- open_access: '1'
  url: https://doi.org/10.17863/CAM.50169
month: '05'
oa: 1
oa_version: Published Version
publisher: Apollo - University of Cambridge
related_material:
  record:
  - id: '7942'
    relation: used_in_publication
    status: public
status: public
title: Accompanying dataset for 'Hard antinodal gap revealed by quantum oscillations
  in the pseudogap regime of underdoped high-Tc superconductors'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9713'
abstract:
- lang: eng
  text: Additional analyses of the trajectories
article_processing_charge: No
author:
- first_name: Chitrak
  full_name: Gupta, Chitrak
  last_name: Gupta
- first_name: Umesh
  full_name: Khaniya, Umesh
  last_name: Khaniya
- first_name: Chun Kit
  full_name: Chan, Chun Kit
  last_name: Chan
- first_name: Francois
  full_name: Dehez, Francois
  last_name: Dehez
- first_name: Mrinal
  full_name: Shekhar, Mrinal
  last_name: Shekhar
- first_name: M.R.
  full_name: Gunner, M.R.
  last_name: Gunner
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Christophe
  full_name: Chipot, Christophe
  last_name: Chipot
- first_name: Abhishek
  full_name: Singharoy, Abhishek
  last_name: Singharoy
citation:
  ama: Gupta C, Khaniya U, Chan CK, et al. Supporting information. 2020. doi:<a href="https://doi.org/10.1021/jacs.9b13450.s001">10.1021/jacs.9b13450.s001</a>
  apa: Gupta, C., Khaniya, U., Chan, C. K., Dehez, F., Shekhar, M., Gunner, M. R.,
    … Singharoy, A. (2020). Supporting information. American Chemical Society . <a
    href="https://doi.org/10.1021/jacs.9b13450.s001">https://doi.org/10.1021/jacs.9b13450.s001</a>
  chicago: Gupta, Chitrak, Umesh Khaniya, Chun Kit Chan, Francois Dehez, Mrinal Shekhar,
    M.R. Gunner, Leonid A Sazanov, Christophe Chipot, and Abhishek Singharoy. “Supporting
    Information.” American Chemical Society , 2020. <a href="https://doi.org/10.1021/jacs.9b13450.s001">https://doi.org/10.1021/jacs.9b13450.s001</a>.
  ieee: C. Gupta <i>et al.</i>, “Supporting information.” American Chemical Society
    , 2020.
  ista: Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov LA, Chipot
    C, Singharoy A. 2020. Supporting information, American Chemical Society , <a href="https://doi.org/10.1021/jacs.9b13450.s001">10.1021/jacs.9b13450.s001</a>.
  mla: Gupta, Chitrak, et al. <i>Supporting Information</i>. American Chemical Society
    , 2020, doi:<a href="https://doi.org/10.1021/jacs.9b13450.s001">10.1021/jacs.9b13450.s001</a>.
  short: C. Gupta, U. Khaniya, C.K. Chan, F. Dehez, M. Shekhar, M.R. Gunner, L.A.
    Sazanov, C. Chipot, A. Singharoy, (2020).
date_created: 2021-07-23T12:02:39Z
date_published: 2020-05-20T00:00:00Z
date_updated: 2023-08-22T07:49:38Z
day: '20'
department:
- _id: LeSa
doi: 10.1021/jacs.9b13450.s001
month: '05'
oa_version: Published Version
publisher: 'American Chemical Society '
related_material:
  record:
  - id: '8040'
    relation: used_in_publication
    status: public
status: public
title: Supporting information
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9750'
abstract:
- lang: eng
  text: Tension of the actomyosin cell cortex plays a key role in determining cell-cell
    contact growth and size. The level of cortical tension outside of the cell-cell
    contact, when pulling at the contact edge, scales with the total size to which
    a cell-cell contact can grow1,2. Here we show in zebrafish primary germ layer
    progenitor cells that this monotonic relationship only applies to a narrow range
    of cortical tension increase, and that above a critical threshold, contact size
    inversely scales with cortical tension. This switch from cortical tension increasing
    to decreasing progenitor cell-cell contact size is caused by cortical tension
    promoting E-cadherin anchoring to the actomyosin cytoskeleton, thereby increasing
    clustering and stability of E-cadherin at the contact. Once tension-mediated E-cadherin
    stabilization at the contact exceeds a critical threshold level, the rate by which
    the contact expands in response to pulling forces from the cortex sharply drops,
    leading to smaller contacts at physiologically relevant timescales of contact
    formation. Thus, the activity of cortical tension in expanding cell-cell contact
    size is limited by tension stabilizing E-cadherin-actin complexes at the contact.
acknowledged_ssus:
- _id: Bio
- _id: EM-Fac
- _id: SSU
acknowledgement: We would like to thank Edouard Hannezo for discussions, Shayan Shami
  Pour and Daniel Capek for help with data analysis, Vanessa Barone and other members
  of the Heisenberg laboratory for thoughtful discussions and comments on the manuscript.
  We also thank Jack Merrin for preparing the microwells, and the Scientific Service
  Units at IST Austria, specifically Bioimaging and Electron Microscopy, and the Zebrafish
  Facility for continuous support. We acknowledge Hitoshi Morita for the kind gift
  of VinculinB-GFP plasmid. This research was supported by an ERC Advanced Grant (MECSPEC)
  to C.-P.H, EMBO Long Term grant (ALTF 187-2013) to M.S and IST Fellow Marie-Curie
  COFUND No. P_IST_EU01 to J.S.
article_processing_charge: No
author:
- first_name: Jana
  full_name: Slovakova, Jana
  id: 30F3F2F0-F248-11E8-B48F-1D18A9856A87
  last_name: Slovakova
- first_name: Mateusz K
  full_name: Sikora, Mateusz K
  id: 2F74BCDE-F248-11E8-B48F-1D18A9856A87
  last_name: Sikora
- first_name: Silvia
  full_name: Caballero Mancebo, Silvia
  id: 2F1E1758-F248-11E8-B48F-1D18A9856A87
  last_name: Caballero Mancebo
  orcid: 0000-0002-5223-3346
- first_name: Gabriel
  full_name: Krens, Gabriel
  id: 2B819732-F248-11E8-B48F-1D18A9856A87
  last_name: Krens
  orcid: 0000-0003-4761-5996
- first_name: Walter
  full_name: Kaufmann, Walter
  id: 3F99E422-F248-11E8-B48F-1D18A9856A87
  last_name: Kaufmann
  orcid: 0000-0001-9735-5315
- first_name: Karla
  full_name: Huljev, Karla
  id: 44C6F6A6-F248-11E8-B48F-1D18A9856A87
  last_name: Huljev
- first_name: Carl-Philipp J
  full_name: Heisenberg, Carl-Philipp J
  id: 39427864-F248-11E8-B48F-1D18A9856A87
  last_name: Heisenberg
  orcid: 0000-0002-0912-4566
citation:
  ama: Slovakova J, Sikora MK, Caballero Mancebo S, et al. Tension-dependent stabilization
    of E-cadherin limits cell-cell contact expansion. <i>bioRxiv</i>. 2020. doi:<a
    href="https://doi.org/10.1101/2020.11.20.391284">10.1101/2020.11.20.391284</a>
  apa: Slovakova, J., Sikora, M. K., Caballero Mancebo, S., Krens, G., Kaufmann, W.,
    Huljev, K., &#38; Heisenberg, C.-P. J. (2020). Tension-dependent stabilization
    of E-cadherin limits cell-cell contact expansion. <i>bioRxiv</i>. Cold Spring
    Harbor Laboratory. <a href="https://doi.org/10.1101/2020.11.20.391284">https://doi.org/10.1101/2020.11.20.391284</a>
  chicago: Slovakova, Jana, Mateusz K Sikora, Silvia Caballero Mancebo, Gabriel Krens,
    Walter Kaufmann, Karla Huljev, and Carl-Philipp J Heisenberg. “Tension-Dependent
    Stabilization of E-Cadherin Limits Cell-Cell Contact Expansion.” <i>BioRxiv</i>.
    Cold Spring Harbor Laboratory, 2020. <a href="https://doi.org/10.1101/2020.11.20.391284">https://doi.org/10.1101/2020.11.20.391284</a>.
  ieee: J. Slovakova <i>et al.</i>, “Tension-dependent stabilization of E-cadherin
    limits cell-cell contact expansion,” <i>bioRxiv</i>. Cold Spring Harbor Laboratory,
    2020.
  ista: Slovakova J, Sikora MK, Caballero Mancebo S, Krens G, Kaufmann W, Huljev K,
    Heisenberg C-PJ. 2020. Tension-dependent stabilization of E-cadherin limits cell-cell
    contact expansion. bioRxiv, <a href="https://doi.org/10.1101/2020.11.20.391284">10.1101/2020.11.20.391284</a>.
  mla: Slovakova, Jana, et al. “Tension-Dependent Stabilization of E-Cadherin Limits
    Cell-Cell Contact Expansion.” <i>BioRxiv</i>, Cold Spring Harbor Laboratory, 2020,
    doi:<a href="https://doi.org/10.1101/2020.11.20.391284">10.1101/2020.11.20.391284</a>.
  short: J. Slovakova, M.K. Sikora, S. Caballero Mancebo, G. Krens, W. Kaufmann, K.
    Huljev, C.-P.J. Heisenberg, BioRxiv (2020).
date_created: 2021-07-29T11:29:50Z
date_published: 2020-11-20T00:00:00Z
date_updated: 2024-03-25T23:30:10Z
day: '20'
department:
- _id: CaHe
- _id: EM-Fac
- _id: Bio
doi: 10.1101/2020.11.20.391284
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/2020.11.20.391284
month: '11'
oa: 1
oa_version: Preprint
page: '41'
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '291734'
  name: International IST Postdoc Fellowship Programme
- _id: 260F1432-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '742573'
  name: Interaction and feedback between cell mechanics and fate specification in
    vertebrate gastrulation
- _id: 2521E28E-B435-11E9-9278-68D0E5697425
  grant_number: 187-2013
  name: Modulation of adhesion function in cell-cell contact formation by cortical
    tension
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
related_material:
  record:
  - id: '10766'
    relation: later_version
    status: public
  - id: '9623'
    relation: dissertation_contains
    status: public
status: public
title: Tension-dependent stabilization of E-cadherin limits cell-cell contact expansion
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2020'
...
---
_id: '9776'
article_processing_charge: No
author:
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: Tamar
  full_name: Friedlander, Tamar
  last_name: Friedlander
citation:
  ama: Grah R, Friedlander T. Supporting information. 2020. doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s001">10.1371/journal.pcbi.1007642.s001</a>
  apa: Grah, R., &#38; Friedlander, T. (2020). Supporting information. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s001">https://doi.org/10.1371/journal.pcbi.1007642.s001</a>
  chicago: Grah, Rok, and Tamar Friedlander. “Supporting Information.” Public Library
    of Science, 2020. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s001">https://doi.org/10.1371/journal.pcbi.1007642.s001</a>.
  ieee: R. Grah and T. Friedlander, “Supporting information.” Public Library of Science,
    2020.
  ista: Grah R, Friedlander T. 2020. Supporting information, Public Library of Science,
    <a href="https://doi.org/10.1371/journal.pcbi.1007642.s001">10.1371/journal.pcbi.1007642.s001</a>.
  mla: Grah, Rok, and Tamar Friedlander. <i>Supporting Information</i>. Public Library
    of Science, 2020, doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s001">10.1371/journal.pcbi.1007642.s001</a>.
  short: R. Grah, T. Friedlander, (2020).
date_created: 2021-08-06T07:15:04Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2023-08-18T06:47:47Z
day: '25'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1007642.s001
month: '02'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '7569'
    relation: used_in_publication
    status: public
status: public
title: Supporting information
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9777'
article_processing_charge: No
author:
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: Tamar
  full_name: Friedlander, Tamar
  last_name: Friedlander
citation:
  ama: Grah R, Friedlander T. Maximizing crosstalk. 2020. doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s002">10.1371/journal.pcbi.1007642.s002</a>
  apa: Grah, R., &#38; Friedlander, T. (2020). Maximizing crosstalk. Public Library
    of Science. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s002">https://doi.org/10.1371/journal.pcbi.1007642.s002</a>
  chicago: Grah, Rok, and Tamar Friedlander. “Maximizing Crosstalk.” Public Library
    of Science, 2020. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s002">https://doi.org/10.1371/journal.pcbi.1007642.s002</a>.
  ieee: R. Grah and T. Friedlander, “Maximizing crosstalk.” Public Library of Science,
    2020.
  ista: Grah R, Friedlander T. 2020. Maximizing crosstalk, Public Library of Science,
    <a href="https://doi.org/10.1371/journal.pcbi.1007642.s002">10.1371/journal.pcbi.1007642.s002</a>.
  mla: Grah, Rok, and Tamar Friedlander. <i>Maximizing Crosstalk</i>. Public Library
    of Science, 2020, doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s002">10.1371/journal.pcbi.1007642.s002</a>.
  short: R. Grah, T. Friedlander, (2020).
date_created: 2021-08-06T07:21:51Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2023-09-12T11:02:25Z
day: '25'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1007642.s002
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1371/journal.pcbi.1007642.s002
month: '02'
oa: 1
oa_version: None
publisher: Public Library of Science
related_material:
  record:
  - id: '7569'
    relation: used_in_publication
    status: public
status: public
title: Maximizing crosstalk
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9779'
article_processing_charge: No
author:
- first_name: Rok
  full_name: Grah, Rok
  id: 483E70DE-F248-11E8-B48F-1D18A9856A87
  last_name: Grah
  orcid: 0000-0003-2539-3560
- first_name: Tamar
  full_name: Friedlander, Tamar
  last_name: Friedlander
citation:
  ama: Grah R, Friedlander T. Distribution of crosstalk values. 2020. doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s003">10.1371/journal.pcbi.1007642.s003</a>
  apa: Grah, R., &#38; Friedlander, T. (2020). Distribution of crosstalk values. Public
    Library of Science. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s003">https://doi.org/10.1371/journal.pcbi.1007642.s003</a>
  chicago: Grah, Rok, and Tamar Friedlander. “Distribution of Crosstalk Values.” Public
    Library of Science, 2020. <a href="https://doi.org/10.1371/journal.pcbi.1007642.s003">https://doi.org/10.1371/journal.pcbi.1007642.s003</a>.
  ieee: R. Grah and T. Friedlander, “Distribution of crosstalk values.” Public Library
    of Science, 2020.
  ista: Grah R, Friedlander T. 2020. Distribution of crosstalk values, Public Library
    of Science, <a href="https://doi.org/10.1371/journal.pcbi.1007642.s003">10.1371/journal.pcbi.1007642.s003</a>.
  mla: Grah, Rok, and Tamar Friedlander. <i>Distribution of Crosstalk Values</i>.
    Public Library of Science, 2020, doi:<a href="https://doi.org/10.1371/journal.pcbi.1007642.s003">10.1371/journal.pcbi.1007642.s003</a>.
  short: R. Grah, T. Friedlander, (2020).
date_created: 2021-08-06T07:24:37Z
date_published: 2020-02-25T00:00:00Z
date_updated: 2023-08-18T06:47:47Z
day: '25'
department:
- _id: GaTk
doi: 10.1371/journal.pcbi.1007642.s003
month: '02'
oa_version: Published Version
publisher: Public Library of Science
related_material:
  record:
  - id: '7569'
    relation: research_data
    status: public
status: public
title: Distribution of crosstalk values
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9780'
abstract:
- lang: eng
  text: "PADREV : 4,4'-dimethoxy[1,1'-biphenyl]-2,2',5,5'-tetrol\r\nSpace Group: C
    2 (5), Cell: a 24.488(16)Å b 5.981(4)Å c 3.911(3)Å, α 90° β 91.47(3)° γ 90°"
article_processing_charge: No
author:
- first_name: Werner
  full_name: Schlemmer, Werner
  last_name: Schlemmer
- first_name: Philipp
  full_name: Nothdurft, Philipp
  last_name: Nothdurft
- first_name: Alina
  full_name: Petzold, Alina
  last_name: Petzold
- first_name: Gisbert
  full_name: Riess, Gisbert
  last_name: Riess
- first_name: Philipp
  full_name: Frühwirt, Philipp
  last_name: Frühwirt
- first_name: Max
  full_name: Schmallegger, Max
  last_name: Schmallegger
- first_name: Georg
  full_name: Gescheidt-Demner, Georg
  last_name: Gescheidt-Demner
- first_name: Roland
  full_name: Fischer, Roland
  last_name: Fischer
- first_name: Stefan Alexander
  full_name: Freunberger, Stefan Alexander
  id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
  last_name: Freunberger
  orcid: 0000-0003-2902-5319
- first_name: Wolfgang
  full_name: Kern, Wolfgang
  last_name: Kern
- first_name: Stefan
  full_name: Spirk, Stefan
  last_name: Spirk
citation:
  ama: 'Schlemmer W, Nothdurft P, Petzold A, et al. CCDC 1991959: Experimental Crystal
    Structure Determination. 2020. doi:<a href="https://doi.org/10.5517/ccdc.csd.cc24vsrk">10.5517/ccdc.csd.cc24vsrk</a>'
  apa: 'Schlemmer, W., Nothdurft, P., Petzold, A., Riess, G., Frühwirt, P., Schmallegger,
    M., … Spirk, S. (2020). CCDC 1991959: Experimental Crystal Structure Determination.
    CCDC. <a href="https://doi.org/10.5517/ccdc.csd.cc24vsrk">https://doi.org/10.5517/ccdc.csd.cc24vsrk</a>'
  chicago: 'Schlemmer, Werner, Philipp Nothdurft, Alina Petzold, Gisbert Riess, Philipp
    Frühwirt, Max Schmallegger, Georg Gescheidt-Demner, et al. “CCDC 1991959: Experimental
    Crystal Structure Determination.” CCDC, 2020. <a href="https://doi.org/10.5517/ccdc.csd.cc24vsrk">https://doi.org/10.5517/ccdc.csd.cc24vsrk</a>.'
  ieee: 'W. Schlemmer <i>et al.</i>, “CCDC 1991959: Experimental Crystal Structure
    Determination.” CCDC, 2020.'
  ista: 'Schlemmer W, Nothdurft P, Petzold A, Riess G, Frühwirt P, Schmallegger M,
    Gescheidt-Demner G, Fischer R, Freunberger SA, Kern W, Spirk S. 2020. CCDC 1991959:
    Experimental Crystal Structure Determination, CCDC, <a href="https://doi.org/10.5517/ccdc.csd.cc24vsrk">10.5517/ccdc.csd.cc24vsrk</a>.'
  mla: 'Schlemmer, Werner, et al. <i>CCDC 1991959: Experimental Crystal Structure
    Determination</i>. CCDC, 2020, doi:<a href="https://doi.org/10.5517/ccdc.csd.cc24vsrk">10.5517/ccdc.csd.cc24vsrk</a>.'
  short: W. Schlemmer, P. Nothdurft, A. Petzold, G. Riess, P. Frühwirt, M. Schmallegger,
    G. Gescheidt-Demner, R. Fischer, S.A. Freunberger, W. Kern, S. Spirk, (2020).
date_created: 2021-08-06T07:41:07Z
date_published: 2020-03-22T00:00:00Z
date_updated: 2023-09-05T16:03:47Z
day: '22'
department:
- _id: StFr
doi: 10.5517/ccdc.csd.cc24vsrk
main_file_link:
- open_access: '1'
  url: https://dx.doi.org/10.5517/ccdc.csd.cc24vsrk
month: '03'
oa: 1
oa_version: Published Version
publisher: CCDC
related_material:
  record:
  - id: '8329'
    relation: used_in_publication
    status: public
status: public
title: 'CCDC 1991959: Experimental Crystal Structure Determination'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9781'
abstract:
- lang: eng
  text: We consider the Pekar functional on a ball in ℝ3. We prove uniqueness of minimizers,
    and a quadratic lower bound in terms of the distance to the minimizer. The latter
    follows from nondegeneracy of the Hessian at the minimum.
acknowledgement: We are grateful for the hospitality at the Mittag-Leffler Institute,
  where part of this work has been done. The work of the authors was supported by
  the European Research Council (ERC)under the European Union's Horizon 2020 research
  and innovation programme grant 694227.
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Dario
  full_name: Feliciangeli, Dario
  id: 41A639AA-F248-11E8-B48F-1D18A9856A87
  last_name: Feliciangeli
  orcid: 0000-0003-0754-8530
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Feliciangeli D, Seiringer R. Uniqueness and nondegeneracy of minimizers of
    the Pekar functional on a ball. <i>SIAM Journal on Mathematical Analysis</i>.
    2020;52(1):605-622. doi:<a href="https://doi.org/10.1137/19m126284x">10.1137/19m126284x</a>
  apa: Feliciangeli, D., &#38; Seiringer, R. (2020). Uniqueness and nondegeneracy
    of minimizers of the Pekar functional on a ball. <i>SIAM Journal on Mathematical
    Analysis</i>. Society for Industrial &#38; Applied Mathematics . <a href="https://doi.org/10.1137/19m126284x">https://doi.org/10.1137/19m126284x</a>
  chicago: Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy
    of Minimizers of the Pekar Functional on a Ball.” <i>SIAM Journal on Mathematical
    Analysis</i>. Society for Industrial &#38; Applied Mathematics , 2020. <a href="https://doi.org/10.1137/19m126284x">https://doi.org/10.1137/19m126284x</a>.
  ieee: D. Feliciangeli and R. Seiringer, “Uniqueness and nondegeneracy of minimizers
    of the Pekar functional on a ball,” <i>SIAM Journal on Mathematical Analysis</i>,
    vol. 52, no. 1. Society for Industrial &#38; Applied Mathematics , pp. 605–622,
    2020.
  ista: Feliciangeli D, Seiringer R. 2020. Uniqueness and nondegeneracy of minimizers
    of the Pekar functional on a ball. SIAM Journal on Mathematical Analysis. 52(1),
    605–622.
  mla: Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy of
    Minimizers of the Pekar Functional on a Ball.” <i>SIAM Journal on Mathematical
    Analysis</i>, vol. 52, no. 1, Society for Industrial &#38; Applied Mathematics
    , 2020, pp. 605–22, doi:<a href="https://doi.org/10.1137/19m126284x">10.1137/19m126284x</a>.
  short: D. Feliciangeli, R. Seiringer, SIAM Journal on Mathematical Analysis 52 (2020)
    605–622.
date_created: 2021-08-06T07:34:16Z
date_published: 2020-02-12T00:00:00Z
date_updated: 2023-09-07T13:30:11Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1137/19m126284x
ec_funded: 1
external_id:
  arxiv:
  - '1904.08647 '
  isi:
  - '000546967700022'
has_accepted_license: '1'
intvolume: '        52'
isi: 1
issue: '1'
keyword:
- Applied Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1904.08647
month: '02'
oa: 1
oa_version: Preprint
page: 605-622
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
  eissn:
  - 1095-7154
  issn:
  - 0036-1410
publication_status: published
publisher: 'Society for Industrial & Applied Mathematics '
quality_controlled: '1'
related_material:
  record:
  - id: '9733'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 52
year: '2020'
...
---
_id: '9798'
abstract:
- lang: eng
  text: Fitness interactions between mutations can influence a population’s evolution
    in many different ways. While epistatic effects are difficult to measure precisely,
    important information is captured by the mean and variance of log fitnesses for
    individuals carrying different numbers of mutations. We derive predictions for
    these quantities from a class of simple fitness landscapes, based on models of
    optimizing selection on quantitative traits. We also explore extensions to the
    models, including modular pleiotropy, variable effect sizes, mutational bias and
    maladaptation of the wild type. We illustrate our approach by reanalysing a large
    dataset of mutant effects in a yeast snoRNA. Though characterized by some large
    epistatic effects, these data give a good overall fit to the non-epistatic null
    model, suggesting that epistasis might have limited influence on the evolutionary
    dynamics in this system. We also show how the amount of epistasis depends on both
    the underlying fitness landscape and the distribution of mutations, and so is
    expected to vary in consistent ways between new mutations, standing variation
    and fixed mutations.
article_processing_charge: No
author:
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: John J.
  full_name: Welch, John J.
  last_name: Welch
citation:
  ama: Fraisse C, Welch JJ. Simulation code for Fig S2 from the distribution of epistasis
    on simple fitness landscapes. 2020. doi:<a href="https://doi.org/10.6084/m9.figshare.7957472.v1">10.6084/m9.figshare.7957472.v1</a>
  apa: Fraisse, C., &#38; Welch, J. J. (2020). Simulation code for Fig S2 from the
    distribution of epistasis on simple fitness landscapes. Royal Society of London.
    <a href="https://doi.org/10.6084/m9.figshare.7957472.v1">https://doi.org/10.6084/m9.figshare.7957472.v1</a>
  chicago: Fraisse, Christelle, and John J. Welch. “Simulation Code for Fig S2 from
    the Distribution of Epistasis on Simple Fitness Landscapes.” Royal Society of
    London, 2020. <a href="https://doi.org/10.6084/m9.figshare.7957472.v1">https://doi.org/10.6084/m9.figshare.7957472.v1</a>.
  ieee: C. Fraisse and J. J. Welch, “Simulation code for Fig S2 from the distribution
    of epistasis on simple fitness landscapes.” Royal Society of London, 2020.
  ista: Fraisse C, Welch JJ. 2020. Simulation code for Fig S2 from the distribution
    of epistasis on simple fitness landscapes, Royal Society of London, <a href="https://doi.org/10.6084/m9.figshare.7957472.v1">10.6084/m9.figshare.7957472.v1</a>.
  mla: Fraisse, Christelle, and John J. Welch. <i>Simulation Code for Fig S2 from
    the Distribution of Epistasis on Simple Fitness Landscapes</i>. Royal Society
    of London, 2020, doi:<a href="https://doi.org/10.6084/m9.figshare.7957472.v1">10.6084/m9.figshare.7957472.v1</a>.
  short: C. Fraisse, J.J. Welch, (2020).
date_created: 2021-08-06T11:18:15Z
date_published: 2020-10-15T00:00:00Z
date_updated: 2023-08-25T10:34:41Z
day: '15'
department:
- _id: BeVi
- _id: NiBa
doi: 10.6084/m9.figshare.7957472.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.7957472.v1
month: '10'
oa: 1
oa_version: Published Version
publisher: Royal Society of London
related_material:
  record:
  - id: '6467'
    relation: used_in_publication
    status: public
status: public
title: Simulation code for Fig S2 from the distribution of epistasis on simple fitness
  landscapes
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9799'
abstract:
- lang: eng
  text: Fitness interactions between mutations can influence a population’s evolution
    in many different ways. While epistatic effects are difficult to measure precisely,
    important information is captured by the mean and variance of log fitnesses for
    individuals carrying different numbers of mutations. We derive predictions for
    these quantities from a class of simple fitness landscapes, based on models of
    optimizing selection on quantitative traits. We also explore extensions to the
    models, including modular pleiotropy, variable effect sizes, mutational bias and
    maladaptation of the wild type. We illustrate our approach by reanalysing a large
    dataset of mutant effects in a yeast snoRNA. Though characterized by some large
    epistatic effects, these data give a good overall fit to the non-epistatic null
    model, suggesting that epistasis might have limited influence on the evolutionary
    dynamics in this system. We also show how the amount of epistasis depends on both
    the underlying fitness landscape and the distribution of mutations, and so is
    expected to vary in consistent ways between new mutations, standing variation
    and fixed mutations.
article_processing_charge: No
author:
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: John J.
  full_name: Welch, John J.
  last_name: Welch
citation:
  ama: Fraisse C, Welch JJ. Simulation code for Fig S1 from the distribution of epistasis
    on simple fitness landscapes. 2020. doi:<a href="https://doi.org/10.6084/m9.figshare.7957469.v1">10.6084/m9.figshare.7957469.v1</a>
  apa: Fraisse, C., &#38; Welch, J. J. (2020). Simulation code for Fig S1 from the
    distribution of epistasis on simple fitness landscapes. Royal Society of London.
    <a href="https://doi.org/10.6084/m9.figshare.7957469.v1">https://doi.org/10.6084/m9.figshare.7957469.v1</a>
  chicago: Fraisse, Christelle, and John J. Welch. “Simulation Code for Fig S1 from
    the Distribution of Epistasis on Simple Fitness Landscapes.” Royal Society of
    London, 2020. <a href="https://doi.org/10.6084/m9.figshare.7957469.v1">https://doi.org/10.6084/m9.figshare.7957469.v1</a>.
  ieee: C. Fraisse and J. J. Welch, “Simulation code for Fig S1 from the distribution
    of epistasis on simple fitness landscapes.” Royal Society of London, 2020.
  ista: Fraisse C, Welch JJ. 2020. Simulation code for Fig S1 from the distribution
    of epistasis on simple fitness landscapes, Royal Society of London, <a href="https://doi.org/10.6084/m9.figshare.7957469.v1">10.6084/m9.figshare.7957469.v1</a>.
  mla: Fraisse, Christelle, and John J. Welch. <i>Simulation Code for Fig S1 from
    the Distribution of Epistasis on Simple Fitness Landscapes</i>. Royal Society
    of London, 2020, doi:<a href="https://doi.org/10.6084/m9.figshare.7957469.v1">10.6084/m9.figshare.7957469.v1</a>.
  short: C. Fraisse, J.J. Welch, (2020).
date_created: 2021-08-06T11:26:57Z
date_published: 2020-10-15T00:00:00Z
date_updated: 2023-08-25T10:34:41Z
day: '15'
department:
- _id: BeVi
- _id: NiBa
doi: 10.6084/m9.figshare.7957469.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.7957469.v1
month: '10'
oa: 1
oa_version: Published Version
publisher: Royal Society of London
related_material:
  record:
  - id: '6467'
    relation: used_in_publication
    status: public
status: public
title: Simulation code for Fig S1 from the distribution of epistasis on simple fitness
  landscapes
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9814'
abstract:
- lang: eng
  text: Data and mathematica notebooks for plotting figures from Language learning
    with communication between learners
article_processing_charge: No
author:
- first_name: Rasmus
  full_name: Ibsen-Jensen, Rasmus
  id: 3B699956-F248-11E8-B48F-1D18A9856A87
  last_name: Ibsen-Jensen
  orcid: 0000-0003-4783-0389
- first_name: Josef
  full_name: Tkadlec, Josef
  id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87
  last_name: Tkadlec
  orcid: 0000-0002-1097-9684
- first_name: Krishnendu
  full_name: Chatterjee, Krishnendu
  id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
  last_name: Chatterjee
  orcid: 0000-0002-4561-241X
- first_name: Martin
  full_name: Nowak, Martin
  last_name: Nowak
citation:
  ama: Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. Data and mathematica notebooks
    for plotting figures from language learning with communication between learners
    from language acquisition with communication between learners. 2020. doi:<a href="https://doi.org/10.6084/m9.figshare.5973013.v1">10.6084/m9.figshare.5973013.v1</a>
  apa: Ibsen-Jensen, R., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2020). Data
    and mathematica notebooks for plotting figures from language learning with communication
    between learners from language acquisition with communication between learners.
    Royal Society. <a href="https://doi.org/10.6084/m9.figshare.5973013.v1">https://doi.org/10.6084/m9.figshare.5973013.v1</a>
  chicago: Ibsen-Jensen, Rasmus, Josef Tkadlec, Krishnendu Chatterjee, and Martin
    Nowak. “Data and Mathematica Notebooks for Plotting Figures from Language Learning
    with Communication between Learners from Language Acquisition with Communication
    between Learners.” Royal Society, 2020. <a href="https://doi.org/10.6084/m9.figshare.5973013.v1">https://doi.org/10.6084/m9.figshare.5973013.v1</a>.
  ieee: R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, and M. Nowak, “Data and mathematica
    notebooks for plotting figures from language learning with communication between
    learners from language acquisition with communication between learners.” Royal
    Society, 2020.
  ista: Ibsen-Jensen R, Tkadlec J, Chatterjee K, Nowak M. 2020. Data and mathematica
    notebooks for plotting figures from language learning with communication between
    learners from language acquisition with communication between learners, Royal
    Society, <a href="https://doi.org/10.6084/m9.figshare.5973013.v1">10.6084/m9.figshare.5973013.v1</a>.
  mla: Ibsen-Jensen, Rasmus, et al. <i>Data and Mathematica Notebooks for Plotting
    Figures from Language Learning with Communication between Learners from Language
    Acquisition with Communication between Learners</i>. Royal Society, 2020, doi:<a
    href="https://doi.org/10.6084/m9.figshare.5973013.v1">10.6084/m9.figshare.5973013.v1</a>.
  short: R. Ibsen-Jensen, J. Tkadlec, K. Chatterjee, M. Nowak, (2020).
date_created: 2021-08-06T13:09:57Z
date_published: 2020-10-15T00:00:00Z
date_updated: 2023-10-18T06:36:00Z
day: '15'
department:
- _id: KrCh
doi: 10.6084/m9.figshare.5973013.v1
main_file_link:
- open_access: '1'
  url: https://doi.org/10.6084/m9.figshare.5973013.v1
month: '10'
oa: 1
oa_version: Published Version
publisher: Royal Society
related_material:
  record:
  - id: '198'
    relation: used_in_publication
    status: public
status: public
title: Data and mathematica notebooks for plotting figures from language learning
  with communication between learners from language acquisition with communication
  between learners
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9878'
article_processing_charge: No
author:
- first_name: Chitrak
  full_name: Gupta, Chitrak
  last_name: Gupta
- first_name: Umesh
  full_name: Khaniya, Umesh
  last_name: Khaniya
- first_name: Chun Kit
  full_name: Chan, Chun Kit
  last_name: Chan
- first_name: Francois
  full_name: Dehez, Francois
  last_name: Dehez
- first_name: Mrinal
  full_name: Shekhar, Mrinal
  last_name: Shekhar
- first_name: M.R.
  full_name: Gunner, M.R.
  last_name: Gunner
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
- first_name: Christophe
  full_name: Chipot, Christophe
  last_name: Chipot
- first_name: Abhishek
  full_name: Singharoy, Abhishek
  last_name: Singharoy
citation:
  ama: Gupta C, Khaniya U, Chan CK, et al. Movies. 2020. doi:<a href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>
  apa: Gupta, C., Khaniya, U., Chan, C. K., Dehez, F., Shekhar, M., Gunner, M. R.,
    … Singharoy, A. (2020). Movies. American Chemical Society. <a href="https://doi.org/10.1021/jacs.9b13450.s002">https://doi.org/10.1021/jacs.9b13450.s002</a>
  chicago: Gupta, Chitrak, Umesh Khaniya, Chun Kit Chan, Francois Dehez, Mrinal Shekhar,
    M.R. Gunner, Leonid A Sazanov, Christophe Chipot, and Abhishek Singharoy. “Movies.”
    American Chemical Society, 2020. <a href="https://doi.org/10.1021/jacs.9b13450.s002">https://doi.org/10.1021/jacs.9b13450.s002</a>.
  ieee: C. Gupta <i>et al.</i>, “Movies.” American Chemical Society, 2020.
  ista: Gupta C, Khaniya U, Chan CK, Dehez F, Shekhar M, Gunner MR, Sazanov LA, Chipot
    C, Singharoy A. 2020. Movies, American Chemical Society, <a href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>.
  mla: Gupta, Chitrak, et al. <i>Movies</i>. American Chemical Society, 2020, doi:<a
    href="https://doi.org/10.1021/jacs.9b13450.s002">10.1021/jacs.9b13450.s002</a>.
  short: C. Gupta, U. Khaniya, C.K. Chan, F. Dehez, M. Shekhar, M.R. Gunner, L.A.
    Sazanov, C. Chipot, A. Singharoy, (2020).
date_created: 2021-08-11T09:18:54Z
date_published: 2020-05-20T00:00:00Z
date_updated: 2023-08-22T07:49:38Z
day: '20'
department:
- _id: LeSa
doi: 10.1021/jacs.9b13450.s002
month: '05'
oa_version: Published Version
publisher: American Chemical Society
related_material:
  record:
  - id: '8040'
    relation: used_in_publication
    status: public
status: public
title: Movies
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '9885'
abstract:
- lang: eng
  text: Data obtained from the fine-grained simulations used in Figures 2-5, data
    obtained from the coarse-grained numerical calculations used in Figure 6, and
    a sample script for the fine-grained simulation as a Jupyter notebook (ZIP)
article_processing_charge: No
author:
- first_name: Mehmet C
  full_name: Ucar, Mehmet C
  id: 50B2A802-6007-11E9-A42B-EB23E6697425
  last_name: Ucar
  orcid: 0000-0003-0506-4217
- first_name: Reinhard
  full_name: Lipowsky, Reinhard
  last_name: Lipowsky
citation:
  ama: Ucar MC, Lipowsky R. MURL_Dataz. 2020. doi:<a href="https://doi.org/10.1021/acs.nanolett.9b04445.s002">10.1021/acs.nanolett.9b04445.s002</a>
  apa: Ucar, M. C., &#38; Lipowsky, R. (2020). MURL_Dataz. American Chemical Society
    . <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s002">https://doi.org/10.1021/acs.nanolett.9b04445.s002</a>
  chicago: Ucar, Mehmet C, and Reinhard Lipowsky. “MURL_Dataz.” American Chemical
    Society , 2020. <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s002">https://doi.org/10.1021/acs.nanolett.9b04445.s002</a>.
  ieee: M. C. Ucar and R. Lipowsky, “MURL_Dataz.” American Chemical Society , 2020.
  ista: Ucar MC, Lipowsky R. 2020. MURL_Dataz, American Chemical Society , <a href="https://doi.org/10.1021/acs.nanolett.9b04445.s002">10.1021/acs.nanolett.9b04445.s002</a>.
  mla: Ucar, Mehmet C., and Reinhard Lipowsky. <i>MURL_Dataz</i>. American Chemical
    Society , 2020, doi:<a href="https://doi.org/10.1021/acs.nanolett.9b04445.s002">10.1021/acs.nanolett.9b04445.s002</a>.
  short: M.C. Ucar, R. Lipowsky, (2020).
date_created: 2021-08-11T13:16:03Z
date_published: 2020-01-08T00:00:00Z
date_updated: 2023-08-17T14:07:52Z
day: '08'
department:
- _id: EdHa
doi: 10.1021/acs.nanolett.9b04445.s002
month: '01'
oa_version: Published Version
publisher: 'American Chemical Society '
related_material:
  record:
  - id: '7166'
    relation: used_in_publication
    status: public
status: public
title: MURL_Dataz
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '10861'
abstract:
- lang: eng
  text: We introduce in this paper AMT2.0, a tool for qualitative and quantitative
    analysis of hybrid continuous and Boolean signals that combine numerical values
    and discrete events. The evaluation of the signals is based on rich temporal specifications
    expressed in extended signal temporal logic, which integrates timed regular expressions
    within signal temporal logic. The tool features qualitative monitoring (property
    satisfaction checking), trace diagnostics for explaining and justifying property
    violations and specification-driven measurement of quantitative features of the
    signal. We demonstrate the tool functionality on several running examples and
    case studies, and evaluate its performance.
article_processing_charge: No
article_type: original
author:
- first_name: Dejan
  full_name: Nickovic, Dejan
  id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
  last_name: Nickovic
- first_name: Olivier
  full_name: Lebeltel, Olivier
  last_name: Lebeltel
- first_name: Oded
  full_name: Maler, Oded
  last_name: Maler
- first_name: Thomas
  full_name: Ferrere, Thomas
  id: 40960E6E-F248-11E8-B48F-1D18A9856A87
  last_name: Ferrere
  orcid: 0000-0001-5199-3143
- first_name: Dogan
  full_name: Ulus, Dogan
  last_name: Ulus
citation:
  ama: 'Nickovic D, Lebeltel O, Maler O, Ferrere T, Ulus D. AMT 2.0: Qualitative and
    quantitative trace analysis with extended signal temporal logic. <i>International
    Journal on Software Tools for Technology Transfer</i>. 2020;22(6):741-758. doi:<a
    href="https://doi.org/10.1007/s10009-020-00582-z">10.1007/s10009-020-00582-z</a>'
  apa: 'Nickovic, D., Lebeltel, O., Maler, O., Ferrere, T., &#38; Ulus, D. (2020).
    AMT 2.0: Qualitative and quantitative trace analysis with extended signal temporal
    logic. <i>International Journal on Software Tools for Technology Transfer</i>.
    Springer Nature. <a href="https://doi.org/10.1007/s10009-020-00582-z">https://doi.org/10.1007/s10009-020-00582-z</a>'
  chicago: 'Nickovic, Dejan, Olivier Lebeltel, Oded Maler, Thomas Ferrere, and Dogan
    Ulus. “AMT 2.0: Qualitative and Quantitative Trace Analysis with Extended Signal
    Temporal Logic.” <i>International Journal on Software Tools for Technology Transfer</i>.
    Springer Nature, 2020. <a href="https://doi.org/10.1007/s10009-020-00582-z">https://doi.org/10.1007/s10009-020-00582-z</a>.'
  ieee: 'D. Nickovic, O. Lebeltel, O. Maler, T. Ferrere, and D. Ulus, “AMT 2.0: Qualitative
    and quantitative trace analysis with extended signal temporal logic,” <i>International
    Journal on Software Tools for Technology Transfer</i>, vol. 22, no. 6. Springer
    Nature, pp. 741–758, 2020.'
  ista: 'Nickovic D, Lebeltel O, Maler O, Ferrere T, Ulus D. 2020. AMT 2.0: Qualitative
    and quantitative trace analysis with extended signal temporal logic. International
    Journal on Software Tools for Technology Transfer. 22(6), 741–758.'
  mla: 'Nickovic, Dejan, et al. “AMT 2.0: Qualitative and Quantitative Trace Analysis
    with Extended Signal Temporal Logic.” <i>International Journal on Software Tools
    for Technology Transfer</i>, vol. 22, no. 6, Springer Nature, 2020, pp. 741–58,
    doi:<a href="https://doi.org/10.1007/s10009-020-00582-z">10.1007/s10009-020-00582-z</a>.'
  short: D. Nickovic, O. Lebeltel, O. Maler, T. Ferrere, D. Ulus, International Journal
    on Software Tools for Technology Transfer 22 (2020) 741–758.
date_created: 2022-03-18T10:10:53Z
date_published: 2020-08-03T00:00:00Z
date_updated: 2023-09-08T11:52:02Z
day: '03'
department:
- _id: ToHe
doi: 10.1007/s10009-020-00582-z
external_id:
  isi:
  - '000555398600001'
intvolume: '        22'
isi: 1
issue: '6'
keyword:
- Information Systems
- Software
language:
- iso: eng
month: '08'
oa_version: None
page: 741-758
publication: International Journal on Software Tools for Technology Transfer
publication_identifier:
  eissn:
  - 1433-2787
  issn:
  - 1433-2779
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '299'
    relation: earlier_version
    status: public
scopus_import: '1'
status: public
title: 'AMT 2.0: Qualitative and quantitative trace analysis with extended signal
  temporal logic'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 22
year: '2020'
...
---
_id: '10862'
abstract:
- lang: eng
  text: We consider the sum of two large Hermitian matrices A and B with a Haar unitary
    conjugation bringing them into a general relative position. We prove that the
    eigenvalue density on the scale slightly above the local eigenvalue spacing is
    asymptotically given by the free additive convolution of the laws of A and B as
    the dimension of the matrix increases. This implies optimal rigidity of the eigenvalues
    and optimal rate of convergence in Voiculescu's theorem. Our previous works [4],
    [5] established these results in the bulk spectrum, the current paper completely
    settles the problem at the spectral edges provided they have the typical square-root
    behavior. The key element of our proof is to compensate the deterioration of the
    stability of the subordination equations by sharp error estimates that properly
    account for the local density near the edge. Our results also hold if the Haar
    unitary matrix is replaced by the Haar orthogonal matrix.
acknowledgement: Partially supported by ERC Advanced Grant RANMAT No. 338804.
article_number: '108639'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Zhigang
  full_name: Bao, Zhigang
  id: 442E6A6C-F248-11E8-B48F-1D18A9856A87
  last_name: Bao
  orcid: 0000-0003-3036-1475
- first_name: László
  full_name: Erdös, László
  id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
  last_name: Erdös
  orcid: 0000-0001-5366-9603
- first_name: Kevin
  full_name: Schnelli, Kevin
  last_name: Schnelli
citation:
  ama: Bao Z, Erdös L, Schnelli K. Spectral rigidity for addition of random matrices
    at the regular edge. <i>Journal of Functional Analysis</i>. 2020;279(7). doi:<a
    href="https://doi.org/10.1016/j.jfa.2020.108639">10.1016/j.jfa.2020.108639</a>
  apa: Bao, Z., Erdös, L., &#38; Schnelli, K. (2020). Spectral rigidity for addition
    of random matrices at the regular edge. <i>Journal of Functional Analysis</i>.
    Elsevier. <a href="https://doi.org/10.1016/j.jfa.2020.108639">https://doi.org/10.1016/j.jfa.2020.108639</a>
  chicago: Bao, Zhigang, László Erdös, and Kevin Schnelli. “Spectral Rigidity for
    Addition of Random Matrices at the Regular Edge.” <i>Journal of Functional Analysis</i>.
    Elsevier, 2020. <a href="https://doi.org/10.1016/j.jfa.2020.108639">https://doi.org/10.1016/j.jfa.2020.108639</a>.
  ieee: Z. Bao, L. Erdös, and K. Schnelli, “Spectral rigidity for addition of random
    matrices at the regular edge,” <i>Journal of Functional Analysis</i>, vol. 279,
    no. 7. Elsevier, 2020.
  ista: Bao Z, Erdös L, Schnelli K. 2020. Spectral rigidity for addition of random
    matrices at the regular edge. Journal of Functional Analysis. 279(7), 108639.
  mla: Bao, Zhigang, et al. “Spectral Rigidity for Addition of Random Matrices at
    the Regular Edge.” <i>Journal of Functional Analysis</i>, vol. 279, no. 7, 108639,
    Elsevier, 2020, doi:<a href="https://doi.org/10.1016/j.jfa.2020.108639">10.1016/j.jfa.2020.108639</a>.
  short: Z. Bao, L. Erdös, K. Schnelli, Journal of Functional Analysis 279 (2020).
date_created: 2022-03-18T10:18:59Z
date_published: 2020-10-15T00:00:00Z
date_updated: 2023-08-24T14:08:42Z
day: '15'
department:
- _id: LaEr
doi: 10.1016/j.jfa.2020.108639
ec_funded: 1
external_id:
  arxiv:
  - '1708.01597'
  isi:
  - '000559623200009'
intvolume: '       279'
isi: 1
issue: '7'
keyword:
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1708.01597
month: '10'
oa: 1
oa_version: Preprint
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '338804'
  name: Random matrices, universality and disordered quantum systems
publication: Journal of Functional Analysis
publication_identifier:
  issn:
  - 0022-1236
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Spectral rigidity for addition of random matrices at the regular edge
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 279
year: '2020'
...
---
_id: '10866'
abstract:
- lang: eng
  text: Recent discoveries have shown that, when two layers of van der Waals (vdW)
    materials are superimposed with a relative twist angle between them, the electronic
    properties of the coupled system can be dramatically altered. Here, we demonstrate
    that a similar concept can be extended to the optics realm, particularly to propagating
    phonon polaritons–hybrid light-matter interactions. To do this, we fabricate stacks
    composed of two twisted slabs of a vdW crystal (α-MoO3) supporting anisotropic
    phonon polaritons (PhPs), and image the propagation of the latter when launched
    by localized sources. Our images reveal that, under a critical angle, the PhPs
    isofrequency curve undergoes a topological transition, in which the propagation
    of PhPs is strongly guided (canalization regime) along predetermined directions
    without geometric spreading. These results demonstrate a new degree of freedom
    (twist angle) for controlling the propagation of polaritons at the nanoscale with
    potential for nanoimaging, (bio)-sensing, or heat management.
acknowledgement: "J.T.-G. and G.Á.-P. acknowledge support through the Severo Ochoa
  Program from the\r\nGovernment of the Principality of Asturias (nos. PA-18-PF-BP17-126
  and PA20-PF-BP19-053,\r\nrespectively). J. M-S acknowledges financial support through
  the Ramón y Cajal Program from\r\nthe Government of Spain (RYC2018-026196-I). A.Y.N.
  acknowledges the Spanish Ministry of\r\nScience, Innovation and Universities (national
  project no. MAT201788358-C3-3-R). P.A.-G.\r\nacknowledges support from the European
  Research Council under starting grant no. 715496,\r\n2DNANOPTICA."
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Jiahua
  full_name: Duan, Jiahua
  last_name: Duan
- first_name: Nathaniel
  full_name: Capote-Robayna, Nathaniel
  last_name: Capote-Robayna
- first_name: Javier
  full_name: Taboada-Gutiérrez, Javier
  last_name: Taboada-Gutiérrez
- first_name: Gonzalo
  full_name: Álvarez-Pérez, Gonzalo
  last_name: Álvarez-Pérez
- first_name: Ivan
  full_name: Prieto Gonzalez, Ivan
  id: 2A307FE2-F248-11E8-B48F-1D18A9856A87
  last_name: Prieto Gonzalez
  orcid: 0000-0002-7370-5357
- first_name: Javier
  full_name: Martín-Sánchez, Javier
  last_name: Martín-Sánchez
- first_name: Alexey Y.
  full_name: Nikitin, Alexey Y.
  last_name: Nikitin
- first_name: Pablo
  full_name: Alonso-González, Pablo
  last_name: Alonso-González
citation:
  ama: 'Duan J, Capote-Robayna N, Taboada-Gutiérrez J, et al. Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. <i>Nano
    Letters</i>. 2020;20(7):5323-5329. doi:<a href="https://doi.org/10.1021/acs.nanolett.0c01673">10.1021/acs.nanolett.0c01673</a>'
  apa: 'Duan, J., Capote-Robayna, N., Taboada-Gutiérrez, J., Álvarez-Pérez, G., Prieto
    Gonzalez, I., Martín-Sánchez, J., … Alonso-González, P. (2020). Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. <i>Nano
    Letters</i>. American Chemical Society. <a href="https://doi.org/10.1021/acs.nanolett.0c01673">https://doi.org/10.1021/acs.nanolett.0c01673</a>'
  chicago: 'Duan, Jiahua, Nathaniel Capote-Robayna, Javier Taboada-Gutiérrez, Gonzalo
    Álvarez-Pérez, Ivan Prieto Gonzalez, Javier Martín-Sánchez, Alexey Y. Nikitin,
    and Pablo Alonso-González. “Twisted Nano-Optics: Manipulating Light at the Nanoscale
    with Twisted Phonon Polaritonic Slabs.” <i>Nano Letters</i>. American Chemical
    Society, 2020. <a href="https://doi.org/10.1021/acs.nanolett.0c01673">https://doi.org/10.1021/acs.nanolett.0c01673</a>.'
  ieee: 'J. Duan <i>et al.</i>, “Twisted nano-optics: Manipulating light at the nanoscale
    with twisted phonon polaritonic slabs,” <i>Nano Letters</i>, vol. 20, no. 7. American
    Chemical Society, pp. 5323–5329, 2020.'
  ista: 'Duan J, Capote-Robayna N, Taboada-Gutiérrez J, Álvarez-Pérez G, Prieto Gonzalez
    I, Martín-Sánchez J, Nikitin AY, Alonso-González P. 2020. Twisted nano-optics:
    Manipulating light at the nanoscale with twisted phonon polaritonic slabs. Nano
    Letters. 20(7), 5323–5329.'
  mla: 'Duan, Jiahua, et al. “Twisted Nano-Optics: Manipulating Light at the Nanoscale
    with Twisted Phonon Polaritonic Slabs.” <i>Nano Letters</i>, vol. 20, no. 7, American
    Chemical Society, 2020, pp. 5323–29, doi:<a href="https://doi.org/10.1021/acs.nanolett.0c01673">10.1021/acs.nanolett.0c01673</a>.'
  short: J. Duan, N. Capote-Robayna, J. Taboada-Gutiérrez, G. Álvarez-Pérez, I. Prieto
    Gonzalez, J. Martín-Sánchez, A.Y. Nikitin, P. Alonso-González, Nano Letters 20
    (2020) 5323–5329.
date_created: 2022-03-18T11:37:38Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2023-09-05T12:05:58Z
day: '01'
department:
- _id: NanoFab
doi: 10.1021/acs.nanolett.0c01673
external_id:
  arxiv:
  - '2004.14599'
  isi:
  - '000548893200082'
  pmid:
  - '32530634'
intvolume: '        20'
isi: 1
issue: '7'
keyword:
- Mechanical Engineering
- Condensed Matter Physics
- General Materials Science
- General Chemistry
- Bioengineering
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2004.14599
month: '07'
oa: 1
oa_version: Preprint
page: 5323-5329
pmid: 1
publication: Nano Letters
publication_identifier:
  eissn:
  - 1530-6992
  issn:
  - 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Twisted nano-optics: Manipulating light at the nanoscale with twisted phonon
  polaritonic slabs'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 20
year: '2020'
...
---
_id: '10867'
abstract:
- lang: eng
  text: In this paper we find a tight estimate for Gromov’s waist of the balls in
    spaces of constant curvature, deduce the estimates for the balls in Riemannian
    manifolds with upper bounds on the curvature (CAT(ϰ)-spaces), and establish similar
    result for normed spaces.
acknowledgement: ' Supported by the Russian Foundation for Basic Research grant 18-01-00036.'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Arseniy
  full_name: Akopyan, Arseniy
  id: 430D2C90-F248-11E8-B48F-1D18A9856A87
  last_name: Akopyan
  orcid: 0000-0002-2548-617X
- first_name: Roman
  full_name: Karasev, Roman
  last_name: Karasev
citation:
  ama: Akopyan A, Karasev R. Waist of balls in hyperbolic and spherical spaces. <i>International
    Mathematics Research Notices</i>. 2020;2020(3):669-697. doi:<a href="https://doi.org/10.1093/imrn/rny037">10.1093/imrn/rny037</a>
  apa: Akopyan, A., &#38; Karasev, R. (2020). Waist of balls in hyperbolic and spherical
    spaces. <i>International Mathematics Research Notices</i>. Oxford University Press.
    <a href="https://doi.org/10.1093/imrn/rny037">https://doi.org/10.1093/imrn/rny037</a>
  chicago: Akopyan, Arseniy, and Roman Karasev. “Waist of Balls in Hyperbolic and
    Spherical Spaces.” <i>International Mathematics Research Notices</i>. Oxford University
    Press, 2020. <a href="https://doi.org/10.1093/imrn/rny037">https://doi.org/10.1093/imrn/rny037</a>.
  ieee: A. Akopyan and R. Karasev, “Waist of balls in hyperbolic and spherical spaces,”
    <i>International Mathematics Research Notices</i>, vol. 2020, no. 3. Oxford University
    Press, pp. 669–697, 2020.
  ista: Akopyan A, Karasev R. 2020. Waist of balls in hyperbolic and spherical spaces.
    International Mathematics Research Notices. 2020(3), 669–697.
  mla: Akopyan, Arseniy, and Roman Karasev. “Waist of Balls in Hyperbolic and Spherical
    Spaces.” <i>International Mathematics Research Notices</i>, vol. 2020, no. 3,
    Oxford University Press, 2020, pp. 669–97, doi:<a href="https://doi.org/10.1093/imrn/rny037">10.1093/imrn/rny037</a>.
  short: A. Akopyan, R. Karasev, International Mathematics Research Notices 2020 (2020)
    669–697.
date_created: 2022-03-18T11:39:30Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-08-24T14:19:55Z
day: '01'
department:
- _id: HeEd
doi: 10.1093/imrn/rny037
external_id:
  arxiv:
  - '1702.07513'
  isi:
  - '000522852700002'
intvolume: '      2020'
isi: 1
issue: '3'
keyword:
- General Mathematics
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1702.07513
month: '02'
oa: 1
oa_version: Preprint
page: 669-697
publication: International Mathematics Research Notices
publication_identifier:
  eissn:
  - 1687-0247
  issn:
  - 1073-7928
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Waist of balls in hyperbolic and spherical spaces
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2020
year: '2020'
...