---
_id: '9158'
abstract:
- lang: eng
  text: While several tools have been developed to study the ground state of many-body
    quantum spin systems, the limitations of existing techniques call for the exploration
    of new approaches. In this manuscript we develop an alternative analytical and
    numerical framework for many-body quantum spin ground states, based on the disentanglement
    formalism. In this approach, observables are exactly expressed as Gaussian-weighted
    functional integrals over scalar fields. We identify the leading contribution
    to these integrals, given by the saddle point of a suitable effective action.
    Analytically, we develop a field-theoretical expansion of the functional integrals,
    performed by means of appropriate Feynman rules. The expansion can be truncated
    to a desired order to obtain analytical approximations to observables. Numerically,
    we show that the disentanglement approach can be used to compute ground state
    expectation values from classical stochastic processes. While the associated fluctuations
    grow exponentially with imaginary time and the system size, this growth can be
    mitigated by means of an importance sampling scheme based on knowledge of the
    saddle point configuration. We illustrate the advantages and limitations of our
    methods by considering the quantum Ising model in 1, 2 and 3 spatial dimensions.
    Our analytical and numerical approaches are applicable to a broad class of systems,
    bridging concepts from quantum lattice models, continuum field theory, and classical
    stochastic processes.
acknowledgement: "S D N would like to thank M J Bhaseen, J Chalker, B Doyon, V Gritsev,
  A Lamacraft,\r\nA Michailidis and M Serbyn for helpful feedback and stimulating
  conversations. S D N\r\nacknowledges funding from the Institute of Science and Technology
  (IST) Austria, and\r\nfrom the European Union’s Horizon 2020 research and innovation
  program under the\r\nMarie Sk\blodowska-Curie Grant Agreement No. 754411. S D N
  also acknowledges funding\r\nfrom the EPSRC Center for Doctoral Training in Cross-Disciplinary
  Approaches to Non-\r\nEquilibrium Systems (CANES) under Grant EP/L015854/1. S D
  N is grateful to IST\r\nAustria for providing open access funding."
article_number: '013101'
article_processing_charge: No
article_type: original
author:
- first_name: Stefano
  full_name: De Nicola, Stefano
  id: 42832B76-F248-11E8-B48F-1D18A9856A87
  last_name: De Nicola
  orcid: 0000-0002-4842-6671
citation:
  ama: 'De Nicola S. Disentanglement approach to quantum spin ground states: Field
    theory and stochastic simulation. <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>. 2021;2021(1). doi:<a href="https://doi.org/10.1088/1742-5468/abc7c7">10.1088/1742-5468/abc7c7</a>'
  apa: 'De Nicola, S. (2021). Disentanglement approach to quantum spin ground states:
    Field theory and stochastic simulation. <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>. IOP Publishing. <a href="https://doi.org/10.1088/1742-5468/abc7c7">https://doi.org/10.1088/1742-5468/abc7c7</a>'
  chicago: 'De Nicola, Stefano. “Disentanglement Approach to Quantum Spin Ground States:
    Field Theory and Stochastic Simulation.” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>. IOP Publishing, 2021. <a href="https://doi.org/10.1088/1742-5468/abc7c7">https://doi.org/10.1088/1742-5468/abc7c7</a>.'
  ieee: 'S. De Nicola, “Disentanglement approach to quantum spin ground states: Field
    theory and stochastic simulation,” <i>Journal of Statistical Mechanics: Theory
    and Experiment</i>, vol. 2021, no. 1. IOP Publishing, 2021.'
  ista: 'De Nicola S. 2021. Disentanglement approach to quantum spin ground states:
    Field theory and stochastic simulation. Journal of Statistical Mechanics: Theory
    and Experiment. 2021(1), 013101.'
  mla: 'De Nicola, Stefano. “Disentanglement Approach to Quantum Spin Ground States:
    Field Theory and Stochastic Simulation.” <i>Journal of Statistical Mechanics:
    Theory and Experiment</i>, vol. 2021, no. 1, 013101, IOP Publishing, 2021, doi:<a
    href="https://doi.org/10.1088/1742-5468/abc7c7">10.1088/1742-5468/abc7c7</a>.'
  short: 'S. De Nicola, Journal of Statistical Mechanics: Theory and Experiment 2021
    (2021).'
date_created: 2021-02-17T17:48:46Z
date_published: 2021-01-05T00:00:00Z
date_updated: 2023-08-07T13:46:28Z
day: '05'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1088/1742-5468/abc7c7
ec_funded: 1
external_id:
  isi:
  - '000605080300001'
file:
- access_level: open_access
  checksum: 64e2aae4837790db26e1dd1986c69c07
  content_type: application/pdf
  creator: dernst
  date_created: 2021-02-19T14:04:40Z
  date_updated: 2021-02-19T14:04:40Z
  file_id: '9172'
  file_name: 2021_JourStatMech_deNicola.pdf
  file_size: 1693609
  relation: main_file
  success: 1
file_date_updated: 2021-02-19T14:04:40Z
has_accepted_license: '1'
intvolume: '      2021'
isi: 1
issue: '1'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: 'Journal of Statistical Mechanics: Theory and Experiment'
publication_identifier:
  issn:
  - 1742-5468
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: 'Disentanglement approach to quantum spin ground states: Field theory and stochastic
  simulation'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2021
year: '2021'
...
---
_id: '9168'
abstract:
- lang: eng
  text: Interspecific crossing experiments have shown that sex chromosomes play a
    major role in reproductive isolation between many pairs of species. However, their
    ability to act as reproductive barriers, which hamper interspecific genetic exchange,
    has rarely been evaluated quantitatively compared to Autosomes. This genome-wide
    limitation of gene flow is essential for understanding the complete separation
    of species, and thus speciation. Here, we develop a mainland-island model of secondary
    contact between hybridizing species of an XY (or ZW) sexual system. We obtain
    theoretical predictions for the frequency of introgressed alleles, and the strength
    of the barrier to neutral gene flow for the two types of chromosomes carrying
    multiple interspecific barrier loci. Theoretical predictions are obtained for
    scenarios where introgressed alleles are rare. We show that the same analytical
    expressions apply for sex chromosomes and autosomes, but with different sex-averaged
    effective parameters. The specific features of sex chromosomes (hemizygosity and
    absence of recombination in the heterogametic sex) lead to reduced levels of introgression
    on the X (or Z) compared to autosomes. This effect can be enhanced by certain
    types of sex-biased forces, but it remains overall small (except when alleles
    causing incompatibilities are recessive). We discuss these predictions in the
    light of empirical data comprising model-based tests of introgression and cline
    surveys in various biological systems.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "The computations were performed with the IST Austria High-Performance
  Computing (HPC) Cluster and the Institut Français de Bioinformatique (IFB) Core
  Cluster. We are grateful to Nick Barton and Beatriz Vicoso for critical comments
  on the model and the manuscript. We also thank Brian Charlesworth, Stuart Baird,
  and an anonymous reviewer for insightful comments.\r\nC.F. was supported by an Austrian
  Science Foundation FWF grant (Project M 2463-B29)."
article_number: iyaa025
article_processing_charge: No
article_type: original
author:
- first_name: Christelle
  full_name: Fraisse, Christelle
  id: 32DF5794-F248-11E8-B48F-1D18A9856A87
  last_name: Fraisse
  orcid: 0000-0001-8441-5075
- first_name: Himani
  full_name: Sachdeva, Himani
  id: 42377A0A-F248-11E8-B48F-1D18A9856A87
  last_name: Sachdeva
citation:
  ama: 'Fraisse C, Sachdeva H. The rates of introgression and barriers to genetic
    exchange between hybridizing species: Sex chromosomes vs autosomes. <i>Genetics</i>.
    2021;217(2). doi:<a href="https://doi.org/10.1093/genetics/iyaa025">10.1093/genetics/iyaa025</a>'
  apa: 'Fraisse, C., &#38; Sachdeva, H. (2021). The rates of introgression and barriers
    to genetic exchange between hybridizing species: Sex chromosomes vs autosomes.
    <i>Genetics</i>. Genetics Society of America. <a href="https://doi.org/10.1093/genetics/iyaa025">https://doi.org/10.1093/genetics/iyaa025</a>'
  chicago: 'Fraisse, Christelle, and Himani Sachdeva. “The Rates of Introgression
    and Barriers to Genetic Exchange between Hybridizing Species: Sex Chromosomes
    vs Autosomes.” <i>Genetics</i>. Genetics Society of America, 2021. <a href="https://doi.org/10.1093/genetics/iyaa025">https://doi.org/10.1093/genetics/iyaa025</a>.'
  ieee: 'C. Fraisse and H. Sachdeva, “The rates of introgression and barriers to genetic
    exchange between hybridizing species: Sex chromosomes vs autosomes,” <i>Genetics</i>,
    vol. 217, no. 2. Genetics Society of America, 2021.'
  ista: 'Fraisse C, Sachdeva H. 2021. The rates of introgression and barriers to genetic
    exchange between hybridizing species: Sex chromosomes vs autosomes. Genetics.
    217(2), iyaa025.'
  mla: 'Fraisse, Christelle, and Himani Sachdeva. “The Rates of Introgression and
    Barriers to Genetic Exchange between Hybridizing Species: Sex Chromosomes vs Autosomes.”
    <i>Genetics</i>, vol. 217, no. 2, iyaa025, Genetics Society of America, 2021,
    doi:<a href="https://doi.org/10.1093/genetics/iyaa025">10.1093/genetics/iyaa025</a>.'
  short: C. Fraisse, H. Sachdeva, Genetics 217 (2021).
date_created: 2021-02-18T14:41:30Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-08-07T13:47:01Z
day: '01'
department:
- _id: NiBa
doi: 10.1093/genetics/iyaa025
external_id:
  isi:
  - '000637218100005'
intvolume: '       217'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1093/genetics/iyaa025
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2662AADE-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: M02463
  name: Sex chromosomes and species barriers
publication: Genetics
publication_identifier:
  issn:
  - 1943-2631
publication_status: published
publisher: Genetics Society of America
quality_controlled: '1'
status: public
title: 'The rates of introgression and barriers to genetic exchange between hybridizing
  species: Sex chromosomes vs autosomes'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 217
year: '2021'
...
---
_id: '9173'
abstract:
- lang: eng
  text: We show that Hilbert schemes of points on supersingular Enriques surface in
    characteristic 2, Hilbn(X), for n ≥ 2 are simply connected, symplectic varieties
    but are not irreducible symplectic as the hodge number h2,0 > 1, even though a
    supersingular Enriques surface is an irreducible symplectic variety. These are
    the classes of varieties which appear only in characteristic 2 and they show that
    the hodge number formula for G¨ottsche-Soergel does not hold over haracteristic
    2. It also gives examples of varieties with trivial canonical class which are
    neither irreducible symplectic nor Calabi-Yau, thereby showing that there are
    strictly more classes of simply connected varieties with trivial canonical class
    in characteristic 2 than over C as given by Beauville-Bogolomov decomposition
    theorem.
acknowledgement: I would like to thank M. Zdanwociz for various mathematical discussions
  which lead to this article, Tamas Hausel for hosting me in his research group at
  IST Austria and the anonymous referee for their helpful suggestions and comments.
  This research has received funding from the European Union's Horizon 2020 Marie
  Sklodowska-Curie Actions Grant No. 754411 and Institue of Science and Technology
  Austria IST-PLUS Grant No. 754411.
article_number: '102957'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: Tanya K
  full_name: Srivastava, Tanya K
  id: 4D046628-F248-11E8-B48F-1D18A9856A87
  last_name: Srivastava
citation:
  ama: Srivastava TK. Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface. <i>Bulletin des Sciences Mathematiques</i>. 2021;167(03). doi:<a
    href="https://doi.org/10.1016/j.bulsci.2021.102957">10.1016/j.bulsci.2021.102957</a>
  apa: Srivastava, T. K. (2021). Pathologies of the Hilbert scheme of points of a
    supersingular Enriques surface. <i>Bulletin Des Sciences Mathematiques</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.bulsci.2021.102957">https://doi.org/10.1016/j.bulsci.2021.102957</a>
  chicago: Srivastava, Tanya K. “Pathologies of the Hilbert Scheme of Points of a
    Supersingular Enriques Surface.” <i>Bulletin Des Sciences Mathematiques</i>. Elsevier,
    2021. <a href="https://doi.org/10.1016/j.bulsci.2021.102957">https://doi.org/10.1016/j.bulsci.2021.102957</a>.
  ieee: T. K. Srivastava, “Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface,” <i>Bulletin des Sciences Mathematiques</i>, vol. 167, no. 03.
    Elsevier, 2021.
  ista: Srivastava TK. 2021. Pathologies of the Hilbert scheme of points of a supersingular
    Enriques surface. Bulletin des Sciences Mathematiques. 167(03), 102957.
  mla: Srivastava, Tanya K. “Pathologies of the Hilbert Scheme of Points of a Supersingular
    Enriques Surface.” <i>Bulletin Des Sciences Mathematiques</i>, vol. 167, no. 03,
    102957, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.bulsci.2021.102957">10.1016/j.bulsci.2021.102957</a>.
  short: T.K. Srivastava, Bulletin Des Sciences Mathematiques 167 (2021).
date_created: 2021-02-21T23:01:20Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-08-07T13:47:48Z
day: '01'
department:
- _id: TaHa
doi: 10.1016/j.bulsci.2021.102957
ec_funded: 1
external_id:
  arxiv:
  - '2010.08976'
  isi:
  - '000623881600009'
intvolume: '       167'
isi: 1
issue: '03'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2010.08976
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Bulletin des Sciences Mathematiques
publication_identifier:
  issn:
  - 0007-4497
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pathologies of the Hilbert scheme of points of a supersingular Enriques surface
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 167
year: '2021'
...
---
_id: '9188'
abstract:
- lang: eng
  text: Genomic imprinting is an epigenetic mechanism that results in parental allele-specific
    expression of ~1% of all genes in mouse and human. Imprinted genes are key developmental
    regulators and play pivotal roles in many biological processes such as nutrient
    transfer from the mother to offspring and neuronal development. Imprinted genes
    are also involved in human disease, including neurodevelopmental disorders, and
    often occur in clusters that are regulated by a common imprint control region
    (ICR). In extra-embryonic tissues ICRs can act over large distances, with the
    largest surrounding Igf2r spanning over 10 million base-pairs. Besides classical
    imprinted expression that shows near exclusive maternal or paternal expression,
    widespread biased imprinted expression has been identified mainly in brain. In
    this review we discuss recent developments mapping cell type specific imprinted
    expression in extra-embryonic tissues and neocortex in the mouse. We highlight
    the advantages of using an inducible uniparental chromosome disomy (UPD) system
    to generate cells carrying either two maternal or two paternal copies of a specific
    chromosome to analyze the functional consequences of genomic imprinting. Mosaic
    Analysis with Double Markers (MADM) allows fluorescent labeling and concomitant
    induction of UPD sparsely in specific cell types, and thus to over-express or
    suppress all imprinted genes on that chromosome. To illustrate the utility of
    this technique, we explain how MADM-induced UPD revealed new insights about the
    function of the well-studied Cdkn1c imprinted gene, and how MADM-induced UPDs
    led to identification of highly cell type specific phenotypes related to perturbed
    imprinted expression in the mouse neocortex. Finally, we give an outlook on how
    MADM could be used to probe cell type specific imprinted expression in other tissues
    in mouse, particularly in extra-embryonic tissues.
acknowledgement: We thank Melissa Stouffer for critically reading the manuscript.
  This work was supported by IST Austria institutional funds; NÖ Forschung und Bildung
  n[f + b] life science call grant (C13-002) to S.H. and the European Research Council
  (ERC) under the European Union's Horizon 2020 research and innovation program (grant
  agreement 725780 LinPro) to S.H.
article_number: '104986'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Florian
  full_name: Pauler, Florian
  id: 48EA0138-F248-11E8-B48F-1D18A9856A87
  last_name: Pauler
- first_name: Quanah
  full_name: Hudson, Quanah
  last_name: Hudson
- first_name: Susanne
  full_name: Laukoter, Susanne
  id: 2D6B7A9A-F248-11E8-B48F-1D18A9856A87
  last_name: Laukoter
- first_name: Simon
  full_name: Hippenmeyer, Simon
  id: 37B36620-F248-11E8-B48F-1D18A9856A87
  last_name: Hippenmeyer
  orcid: 0000-0003-2279-1061
citation:
  ama: Pauler F, Hudson Q, Laukoter S, Hippenmeyer S. Inducible uniparental chromosome
    disomy to probe genomic imprinting at single-cell level in brain and beyond. <i>Neurochemistry
    International</i>. 2021;145(5). doi:<a href="https://doi.org/10.1016/j.neuint.2021.104986">10.1016/j.neuint.2021.104986</a>
  apa: Pauler, F., Hudson, Q., Laukoter, S., &#38; Hippenmeyer, S. (2021). Inducible
    uniparental chromosome disomy to probe genomic imprinting at single-cell level
    in brain and beyond. <i>Neurochemistry International</i>. Elsevier. <a href="https://doi.org/10.1016/j.neuint.2021.104986">https://doi.org/10.1016/j.neuint.2021.104986</a>
  chicago: Pauler, Florian, Quanah Hudson, Susanne Laukoter, and Simon Hippenmeyer.
    “Inducible Uniparental Chromosome Disomy to Probe Genomic Imprinting at Single-Cell
    Level in Brain and Beyond.” <i>Neurochemistry International</i>. Elsevier, 2021.
    <a href="https://doi.org/10.1016/j.neuint.2021.104986">https://doi.org/10.1016/j.neuint.2021.104986</a>.
  ieee: F. Pauler, Q. Hudson, S. Laukoter, and S. Hippenmeyer, “Inducible uniparental
    chromosome disomy to probe genomic imprinting at single-cell level in brain and
    beyond,” <i>Neurochemistry International</i>, vol. 145, no. 5. Elsevier, 2021.
  ista: Pauler F, Hudson Q, Laukoter S, Hippenmeyer S. 2021. Inducible uniparental
    chromosome disomy to probe genomic imprinting at single-cell level in brain and
    beyond. Neurochemistry International. 145(5), 104986.
  mla: Pauler, Florian, et al. “Inducible Uniparental Chromosome Disomy to Probe Genomic
    Imprinting at Single-Cell Level in Brain and Beyond.” <i>Neurochemistry International</i>,
    vol. 145, no. 5, 104986, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.neuint.2021.104986">10.1016/j.neuint.2021.104986</a>.
  short: F. Pauler, Q. Hudson, S. Laukoter, S. Hippenmeyer, Neurochemistry International
    145 (2021).
date_created: 2021-02-23T12:31:43Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-08-07T13:48:26Z
day: '01'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1016/j.neuint.2021.104986
ec_funded: 1
external_id:
  isi:
  - '000635575000005'
  pmid:
  - '33600873'
file:
- access_level: open_access
  checksum: c6d7a40089cd29e289f9b22e75768304
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T12:30:38Z
  date_updated: 2021-08-11T12:30:38Z
  file_id: '9883'
  file_name: 2021_NCI_Pauler.pdf
  file_size: 7083499
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T12:30:38Z
has_accepted_license: '1'
intvolume: '       145'
isi: 1
issue: '5'
keyword:
- Cell Biology
- Cellular and Molecular Neuroscience
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '725780'
  name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 25D92700-B435-11E9-9278-68D0E5697425
  grant_number: LS13-002
  name: Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain
publication: Neurochemistry International
publication_identifier:
  issn:
  - 0197-0186
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Inducible uniparental chromosome disomy to probe genomic imprinting at single-cell
  level in brain and beyond
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 145
year: '2021'
...
---
_id: '9189'
abstract:
- lang: eng
  text: Transposable elements exist widely throughout plant genomes and play important
    roles in plant evolution. Auxin is an important regulator that is traditionally
    associated with root development and drought stress adaptation. The DEEPER ROOTING
    1 (DRO1) gene is a key component of rice drought avoidance. Here, we identified
    a transposon that acts as an autonomous auxin‐responsive promoter and its presence
    at specific genome positions conveys physiological adaptations related to drought
    avoidance. Rice varieties with high and auxin‐mediated transcription of DRO1 in
    the root tip show deeper and longer root phenotypes and are thus better adapted
    to drought. The INDITTO2 transposon contains an auxin response element and displays
    auxin‐responsive promoter activity; it is thus able to convey auxin regulation
    of transcription to genes in its proximity. In the rice Acuce, which displays
    DRO1‐mediated drought adaptation, the INDITTO2 transposon was found to be inserted
    at the promoter region of the DRO1 locus. Transgenesis‐based insertion of the
    INDITTO2 transposon into the DRO1 promoter of the non‐adapted rice variety Nipponbare
    was sufficient to promote its drought avoidance. Our data identify an example
    of how transposons can act as promoters and convey hormonal regulation to nearby
    loci, improving plant fitness in response to different abiotic stresses.
article_processing_charge: No
article_type: original
author:
- first_name: Y
  full_name: Zhao, Y
  last_name: Zhao
- first_name: L
  full_name: Wu, L
  last_name: Wu
- first_name: Q
  full_name: Fu, Q
  last_name: Fu
- first_name: D
  full_name: Wang, D
  last_name: Wang
- first_name: J
  full_name: Li, J
  last_name: Li
- first_name: B
  full_name: Yao, B
  last_name: Yao
- first_name: S
  full_name: Yu, S
  last_name: Yu
- first_name: L
  full_name: Jiang, L
  last_name: Jiang
- first_name: J
  full_name: Qian, J
  last_name: Qian
- first_name: X
  full_name: Zhou, X
  last_name: Zhou
- first_name: L
  full_name: Han, L
  last_name: Han
- first_name: S
  full_name: Zhao, S
  last_name: Zhao
- first_name: C
  full_name: Ma, C
  last_name: Ma
- first_name: Y
  full_name: Zhang, Y
  last_name: Zhang
- first_name: C
  full_name: Luo, C
  last_name: Luo
- first_name: Q
  full_name: Dong, Q
  last_name: Dong
- first_name: S
  full_name: Li, S
  last_name: Li
- first_name: L
  full_name: Zhang, L
  last_name: Zhang
- first_name: X
  full_name: Jiang, X
  last_name: Jiang
- first_name: Y
  full_name: Li, Y
  last_name: Li
- first_name: H
  full_name: Luo, H
  last_name: Luo
- first_name: K
  full_name: Li, K
  last_name: Li
- first_name: J
  full_name: Yang, J
  last_name: Yang
- first_name: Q
  full_name: Luo, Q
  last_name: Luo
- first_name: L
  full_name: Li, L
  last_name: Li
- first_name: S
  full_name: Peng, S
  last_name: Peng
- first_name: H
  full_name: Huang, H
  last_name: Huang
- first_name: Z
  full_name: Zuo, Z
  last_name: Zuo
- first_name: C
  full_name: Liu, C
  last_name: Liu
- first_name: L
  full_name: Wang, L
  last_name: Wang
- first_name: C
  full_name: Li, C
  last_name: Li
- first_name: X
  full_name: He, X
  last_name: He
- first_name: Jiří
  full_name: Friml, Jiří
  id: 4159519E-F248-11E8-B48F-1D18A9856A87
  last_name: Friml
  orcid: 0000-0002-8302-7596
- first_name: Y
  full_name: Du, Y
  last_name: Du
citation:
  ama: Zhao Y, Wu L, Fu Q, et al. INDITTO2 transposon conveys auxin-mediated DRO1
    transcription for rice drought avoidance. <i>Plant, Cell &#38; Environment</i>.
    2021;44(6):1846-1857. doi:<a href="https://doi.org/10.1111/pce.14029">10.1111/pce.14029</a>
  apa: Zhao, Y., Wu, L., Fu, Q., Wang, D., Li, J., Yao, B., … Du, Y. (2021). INDITTO2
    transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance.
    <i>Plant, Cell &#38; Environment</i>. Wiley. <a href="https://doi.org/10.1111/pce.14029">https://doi.org/10.1111/pce.14029</a>
  chicago: Zhao, Y, L Wu, Q Fu, D Wang, J Li, B Yao, S Yu, et al. “INDITTO2 Transposon
    Conveys Auxin-Mediated DRO1 Transcription for Rice Drought Avoidance.” <i>Plant,
    Cell &#38; Environment</i>. Wiley, 2021. <a href="https://doi.org/10.1111/pce.14029">https://doi.org/10.1111/pce.14029</a>.
  ieee: Y. Zhao <i>et al.</i>, “INDITTO2 transposon conveys auxin-mediated DRO1 transcription
    for rice drought avoidance,” <i>Plant, Cell &#38; Environment</i>, vol. 44, no.
    6. Wiley, pp. 1846–1857, 2021.
  ista: Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han
    L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H,
    Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X,
    Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription
    for rice drought avoidance. Plant, Cell &#38; Environment. 44(6), 1846–1857.
  mla: Zhao, Y., et al. “INDITTO2 Transposon Conveys Auxin-Mediated DRO1 Transcription
    for Rice Drought Avoidance.” <i>Plant, Cell &#38; Environment</i>, vol. 44, no.
    6, Wiley, 2021, pp. 1846–57, doi:<a href="https://doi.org/10.1111/pce.14029">10.1111/pce.14029</a>.
  short: Y. Zhao, L. Wu, Q. Fu, D. Wang, J. Li, B. Yao, S. Yu, L. Jiang, J. Qian,
    X. Zhou, L. Han, S. Zhao, C. Ma, Y. Zhang, C. Luo, Q. Dong, S. Li, L. Zhang, X.
    Jiang, Y. Li, H. Luo, K. Li, J. Yang, Q. Luo, L. Li, S. Peng, H. Huang, Z. Zuo,
    C. Liu, L. Wang, C. Li, X. He, J. Friml, Y. Du, Plant, Cell &#38; Environment
    44 (2021) 1846–1857.
date_created: 2021-02-24T10:07:21Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2023-11-07T08:18:36Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/pce.14029
external_id:
  isi:
  - '000625398600001'
  pmid:
  - '33576018'
file:
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  checksum: a812418fede076741c9c4dc07f317068
  content_type: application/pdf
  creator: amally
  date_created: 2023-11-02T17:02:11Z
  date_updated: 2023-11-02T17:02:11Z
  file_id: '14481'
  file_name: Zhao PlantCellEnv 2021_accepted.pdf
  file_size: 8437528
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  success: 1
file_date_updated: 2023-11-02T17:02:11Z
has_accepted_license: '1'
intvolume: '        44'
isi: 1
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 1846-1857
pmid: 1
publication: Plant, Cell & Environment
publication_identifier:
  eissn:
  - 1365-3040
  issn:
  - 0140-7791
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought
  avoidance
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 44
year: '2021'
...
---
_id: '9192'
abstract:
- lang: eng
  text: Here are the research data underlying the publication " Effects of fine-scale
    population structure on inbreeding in a long-term study of snapdragons (Antirrhinum
    majus)." Further information are summed up in the README document.
article_processing_charge: No
author:
- first_name: Parvathy
  full_name: Surendranadh, Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
- first_name: Louise S
  full_name: Arathoon, Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
  orcid: 0000-0003-1771-714X
- first_name: Carina
  full_name: Baskett, Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
  orcid: 0000-0002-7354-8574
- first_name: David
  full_name: Field, David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- first_name: Melinda
  full_name: Pickup, Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- first_name: Nicholas H
  full_name: Barton, Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
citation:
  ama: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. Effects
    of fine-scale population structure on the distribution of heterozygosity in a
    long-term study of Antirrhinum majus. 2021. doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>
  apa: Surendranadh, P., Arathoon, L. S., Baskett, C., Field, D., Pickup, M., &#38;
    Barton, N. H. (2021). Effects of fine-scale population structure on the distribution
    of heterozygosity in a long-term study of Antirrhinum majus. Institute of Science
    and Technology Austria. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>
  chicago: Surendranadh, Parvathy, Louise S Arathoon, Carina Baskett, David Field,
    Melinda Pickup, and Nicholas H Barton. “Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus.”
    Institute of Science and Technology Austria, 2021. <a href="https://doi.org/10.15479/AT:ISTA:9192">https://doi.org/10.15479/AT:ISTA:9192</a>.
  ieee: P. Surendranadh, L. S. Arathoon, C. Baskett, D. Field, M. Pickup, and N. H.
    Barton, “Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus.” Institute of Science and Technology
    Austria, 2021.
  ista: Surendranadh P, Arathoon LS, Baskett C, Field D, Pickup M, Barton NH. 2021.
    Effects of fine-scale population structure on the distribution of heterozygosity
    in a long-term study of Antirrhinum majus, Institute of Science and Technology
    Austria, <a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  mla: Surendranadh, Parvathy, et al. <i>Effects of Fine-Scale Population Structure
    on the Distribution of Heterozygosity in a Long-Term Study of Antirrhinum Majus</i>.
    Institute of Science and Technology Austria, 2021, doi:<a href="https://doi.org/10.15479/AT:ISTA:9192">10.15479/AT:ISTA:9192</a>.
  short: P. Surendranadh, L.S. Arathoon, C. Baskett, D. Field, M. Pickup, N.H. Barton,
    (2021).
contributor:
- contributor_type: project_member
  first_name: Parvathy
  id: 455235B8-F248-11E8-B48F-1D18A9856A87
  last_name: Surendranadh
- contributor_type: project_member
  first_name: Louise S
  id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
  last_name: Arathoon
- contributor_type: project_member
  first_name: Carina
  id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
  last_name: Baskett
- contributor_type: project_member
  first_name: David
  id: 419049E2-F248-11E8-B48F-1D18A9856A87
  last_name: Field
  orcid: 0000-0002-4014-8478
- contributor_type: project_member
  first_name: Melinda
  id: 2C78037E-F248-11E8-B48F-1D18A9856A87
  last_name: Pickup
  orcid: 0000-0001-6118-0541
- contributor_type: project_leader
  first_name: Nicholas H
  id: 4880FE40-F248-11E8-B48F-1D18A9856A87
  last_name: Barton
  orcid: 0000-0002-8548-5240
date_created: 2021-02-24T17:49:21Z
date_published: 2021-02-26T00:00:00Z
date_updated: 2024-02-21T12:41:09Z
day: '26'
ddc:
- '576'
department:
- _id: GradSch
- _id: NiBa
doi: 10.15479/AT:ISTA:9192
file:
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  date_created: 2021-02-24T17:45:13Z
  date_updated: 2021-02-24T17:45:13Z
  file_id: '9193'
  file_name: Data_Code.zip
  file_size: 5934452
  relation: main_file
  success: 1
file_date_updated: 2021-02-24T17:45:13Z
has_accepted_license: '1'
month: '02'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
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  - id: '11411'
    relation: used_in_publication
    status: public
  - id: '11321'
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    status: public
status: public
title: Effects of fine-scale population structure on the distribution of heterozygosity
  in a long-term study of Antirrhinum majus
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9200'
abstract:
- lang: eng
  text: Formal design of embedded and cyber-physical systems relies on mathematical
    modeling. In this paper, we consider the model class of hybrid automata whose
    dynamics are defined by affine differential equations. Given a set of time-series
    data, we present an algorithmic approach to synthesize a hybrid automaton exhibiting
    behavior that is close to the data, up to a specified precision, and changes in
    synchrony with the data. A fundamental problem in our synthesis algorithm is to
    check membership of a time series in a hybrid automaton. Our solution integrates
    reachability and optimization techniques for affine dynamical systems to obtain
    both a sufficient and a necessary condition for membership, combined in a refinement
    framework. The algorithm processes one time series at a time and hence can be
    interrupted, provide an intermediate result, and be resumed. We report experimental
    results demonstrating the applicability of our synthesis approach.
acknowledgement: This research was supported in part by the Austrian Science Fund
  (FWF) under grant Z211-N23 (Wittgenstein Award) and the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement
  No. 754411.
article_processing_charge: No
arxiv: 1
author:
- first_name: Miriam
  full_name: Garcia Soto, Miriam
  id: 4B3207F6-F248-11E8-B48F-1D18A9856A87
  last_name: Garcia Soto
  orcid: 0000-0003-2936-5719
- first_name: Thomas A
  full_name: Henzinger, Thomas A
  id: 40876CD8-F248-11E8-B48F-1D18A9856A87
  last_name: Henzinger
  orcid: 0000-0002-2985-7724
- first_name: Christian
  full_name: Schilling, Christian
  id: 3A2F4DCE-F248-11E8-B48F-1D18A9856A87
  last_name: Schilling
  orcid: 0000-0003-3658-1065
citation:
  ama: 'Garcia Soto M, Henzinger TA, Schilling C. Synthesis of hybrid automata with
    affine dynamics from time-series data. In: <i>HSCC ’21: Proceedings of the 24th
    International Conference on Hybrid Systems: Computation and Control</i>. Association
    for Computing Machinery; 2021:2102.12734. doi:<a href="https://doi.org/10.1145/3447928.3456704">10.1145/3447928.3456704</a>'
  apa: 'Garcia Soto, M., Henzinger, T. A., &#38; Schilling, C. (2021). Synthesis of
    hybrid automata with affine dynamics from time-series data. In <i>HSCC ’21: Proceedings
    of the 24th International Conference on Hybrid Systems: Computation and Control</i>
    (p. 2102.12734). Nashville, TN, United States: Association for Computing Machinery.
    <a href="https://doi.org/10.1145/3447928.3456704">https://doi.org/10.1145/3447928.3456704</a>'
  chicago: 'Garcia Soto, Miriam, Thomas A Henzinger, and Christian Schilling. “Synthesis
    of Hybrid Automata with Affine Dynamics from Time-Series Data.” In <i>HSCC ’21:
    Proceedings of the 24th International Conference on Hybrid Systems: Computation
    and Control</i>, 2102.12734. Association for Computing Machinery, 2021. <a href="https://doi.org/10.1145/3447928.3456704">https://doi.org/10.1145/3447928.3456704</a>.'
  ieee: 'M. Garcia Soto, T. A. Henzinger, and C. Schilling, “Synthesis of hybrid automata
    with affine dynamics from time-series data,” in <i>HSCC ’21: Proceedings of the
    24th International Conference on Hybrid Systems: Computation and Control</i>,
    Nashville, TN, United States, 2021, p. 2102.12734.'
  ista: 'Garcia Soto M, Henzinger TA, Schilling C. 2021. Synthesis of hybrid automata
    with affine dynamics from time-series data. HSCC ’21: Proceedings of the 24th
    International Conference on Hybrid Systems: Computation and Control. HSCC: International
    Conference on Hybrid Systems Computation and Control, 2102.12734.'
  mla: 'Garcia Soto, Miriam, et al. “Synthesis of Hybrid Automata with Affine Dynamics
    from Time-Series Data.” <i>HSCC ’21: Proceedings of the 24th International Conference
    on Hybrid Systems: Computation and Control</i>, Association for Computing Machinery,
    2021, p. 2102.12734, doi:<a href="https://doi.org/10.1145/3447928.3456704">10.1145/3447928.3456704</a>.'
  short: 'M. Garcia Soto, T.A. Henzinger, C. Schilling, in:, HSCC ’21: Proceedings
    of the 24th International Conference on Hybrid Systems: Computation and Control,
    Association for Computing Machinery, 2021, p. 2102.12734.'
conference:
  end_date: 2021-05-21
  location: Nashville, TN, United States
  name: 'HSCC: International Conference on Hybrid Systems Computation and Control'
  start_date: 2021-05-19
date_created: 2021-02-26T16:30:39Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-08-07T13:49:33Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1145/3447928.3456704
ec_funded: 1
external_id:
  arxiv:
  - '2102.12734'
  isi:
  - '000932821700028'
file:
- access_level: open_access
  checksum: 4c1202c1abf71384c3ee6fea88c2f80e
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-05-25T13:53:22Z
  date_updated: 2021-05-25T13:53:22Z
  file_id: '9424'
  file_name: 2021_HSCC_Soto.pdf
  file_size: 1474786
  relation: main_file
  success: 1
file_date_updated: 2021-05-25T13:53:22Z
has_accepted_license: '1'
isi: 1
keyword:
- hybrid automaton
- membership
- system identification
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '2102.12734'
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: Z211
  name: The Wittgenstein Prize
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: 'HSCC ''21: Proceedings of the 24th International Conference on Hybrid
  Systems: Computation and Control'
publication_identifier:
  isbn:
  - '9781450383394'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis of hybrid automata with affine dynamics from time-series data
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '9205'
abstract:
- lang: eng
  text: Cryo-EM grid preparation is an important bottleneck in protein structure determination,
    especially for membrane proteins, typically requiring screening of a large number
    of conditions. We systematically investigated the effects of buffer components,
    blotting conditions and grid types on the outcome of grid preparation of five
    different membrane protein samples. Aggregation was the most common type of problem
    which was addressed by changing detergents, salt concentration or reconstitution
    of proteins into nanodiscs or amphipols. We show that the optimal concentration
    of detergent is between 0.05 and 0.4% and that the presence of a low concentration
    of detergent with a high critical micellar concentration protects the proteins
    from denaturation at the air-water interface. Furthermore, we discuss the strategies
    for achieving an adequate ice thickness, particle coverage and orientation distribution
    on free ice and on support films. Our findings provide a clear roadmap for comprehensive
    screening of conditions for cryo-EM grid preparation of membrane proteins.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: We thank the Electron Microscopy Facilities at the Institute of Science
  and Technology Austria and at the Vienna Biocenter for providing access and training
  for the electron microscopes. This project has received funding from the European
  Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
  Grant Agreement no. 665385 .
article_number: '102139'
article_processing_charge: No
article_type: original
author:
- first_name: Domen
  full_name: Kampjut, Domen
  id: 37233050-F248-11E8-B48F-1D18A9856A87
  last_name: Kampjut
- first_name: Julia
  full_name: Steiner, Julia
  id: 3BB67EB0-F248-11E8-B48F-1D18A9856A87
  last_name: Steiner
- first_name: Leonid A
  full_name: Sazanov, Leonid A
  id: 338D39FE-F248-11E8-B48F-1D18A9856A87
  last_name: Sazanov
  orcid: 0000-0002-0977-7989
citation:
  ama: Kampjut D, Steiner J, Sazanov LA. Cryo-EM grid optimization for membrane proteins.
    <i>iScience</i>. 2021;24(3). doi:<a href="https://doi.org/10.1016/j.isci.2021.102139">10.1016/j.isci.2021.102139</a>
  apa: Kampjut, D., Steiner, J., &#38; Sazanov, L. A. (2021). Cryo-EM grid optimization
    for membrane proteins. <i>IScience</i>. Elsevier. <a href="https://doi.org/10.1016/j.isci.2021.102139">https://doi.org/10.1016/j.isci.2021.102139</a>
  chicago: Kampjut, Domen, Julia Steiner, and Leonid A Sazanov. “Cryo-EM Grid Optimization
    for Membrane Proteins.” <i>IScience</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.isci.2021.102139">https://doi.org/10.1016/j.isci.2021.102139</a>.
  ieee: D. Kampjut, J. Steiner, and L. A. Sazanov, “Cryo-EM grid optimization for
    membrane proteins,” <i>iScience</i>, vol. 24, no. 3. Elsevier, 2021.
  ista: Kampjut D, Steiner J, Sazanov LA. 2021. Cryo-EM grid optimization for membrane
    proteins. iScience. 24(3), 102139.
  mla: Kampjut, Domen, et al. “Cryo-EM Grid Optimization for Membrane Proteins.” <i>IScience</i>,
    vol. 24, no. 3, 102139, Elsevier, 2021, doi:<a href="https://doi.org/10.1016/j.isci.2021.102139">10.1016/j.isci.2021.102139</a>.
  short: D. Kampjut, J. Steiner, L.A. Sazanov, IScience 24 (2021).
date_created: 2021-02-28T23:01:24Z
date_published: 2021-03-19T00:00:00Z
date_updated: 2023-08-07T13:54:06Z
day: '19'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.1016/j.isci.2021.102139
ec_funded: 1
external_id:
  isi:
  - '000631646000012'
  pmid:
  - '33665558'
file:
- access_level: open_access
  checksum: 50585447386fe5842f07ab9b3a66e7e9
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-03T07:38:14Z
  date_updated: 2021-03-03T07:38:14Z
  file_id: '9219'
  file_name: 2021_iScience_Kampjut.pdf
  file_size: 7431411
  relation: main_file
  success: 1
file_date_updated: 2021-03-03T07:38:14Z
has_accepted_license: '1'
intvolume: '        24'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '665385'
  name: International IST Doctoral Program
publication: iScience
publication_identifier:
  eissn:
  - '25890042'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cryo-EM grid optimization for membrane proteins
tmp:
  image: /images/cc_by_nc_nd.png
  legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
  name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
    (CC BY-NC-ND 4.0)
  short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 24
year: '2021'
...
---
_id: '9206'
abstract:
- lang: eng
  text: 'The precise engineering of thermoelectric materials using nanocrystals as
    their building blocks has proven to be an excellent strategy to increase energy
    conversion efficiency. Here we present a synthetic route to produce Sb-doped PbS
    colloidal nanoparticles. These nanoparticles are then consolidated into nanocrystalline
    PbS:Sb using spark plasma sintering. We demonstrate that the introduction of Sb
    significantly influences the size, geometry, crystal lattice and especially the
    carrier concentration of PbS. The increase of charge carrier concentration achieved
    with the introduction of Sb translates into an increase of the electrical and
    thermal conductivities and a decrease of the Seebeck coefficient. Overall, PbS:Sb
    nanomaterial were characterized by two-fold higher thermoelectric figures of merit
    than undoped PbS. '
acknowledgement: "This work was supported by European Regional Development Funds and
  the Framework 7\r\nprogram under project UNION (FP7-NMP 310250). GSN acknowledges
  support from the US National Science Foundation under grant No. DMR-1748188. DC
  acknowledges support from COLCIENCIAS under project 120480863414. "
article_number: '853'
article_processing_charge: No
article_type: original
author:
- first_name: Doris
  full_name: Cadavid, Doris
  last_name: Cadavid
- first_name: Kaya
  full_name: Wei, Kaya
  last_name: Wei
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Aziz
  full_name: Genç, Aziz
  last_name: Genç
- first_name: Taisiia
  full_name: Berestok, Taisiia
  last_name: Berestok
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Alexey
  full_name: Shavel, Alexey
  last_name: Shavel
- first_name: George S.
  full_name: Nolas, George S.
  last_name: Nolas
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Cadavid D, Wei K, Liu Y, et al. Synthesis, bottom up assembly and thermoelectric
    properties of Sb-doped PbS nanocrystal building blocks. <i>Materials</i>. 2021;14(4).
    doi:<a href="https://doi.org/10.3390/ma14040853">10.3390/ma14040853</a>
  apa: Cadavid, D., Wei, K., Liu, Y., Zhang, Y., Li, M., Genç, A., … Cabot, A. (2021).
    Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS nanocrystal
    building blocks. <i>Materials</i>. MDPI. <a href="https://doi.org/10.3390/ma14040853">https://doi.org/10.3390/ma14040853</a>
  chicago: Cadavid, Doris, Kaya Wei, Yu Liu, Yu Zhang, Mengyao Li, Aziz Genç, Taisiia
    Berestok, et al. “Synthesis, Bottom up Assembly and Thermoelectric Properties
    of Sb-Doped PbS Nanocrystal Building Blocks.” <i>Materials</i>. MDPI, 2021. <a
    href="https://doi.org/10.3390/ma14040853">https://doi.org/10.3390/ma14040853</a>.
  ieee: D. Cadavid <i>et al.</i>, “Synthesis, bottom up assembly and thermoelectric
    properties of Sb-doped PbS nanocrystal building blocks,” <i>Materials</i>, vol.
    14, no. 4. MDPI, 2021.
  ista: Cadavid D, Wei K, Liu Y, Zhang Y, Li M, Genç A, Berestok T, Ibáñez M, Shavel
    A, Nolas GS, Cabot A. 2021. Synthesis, bottom up assembly and thermoelectric properties
    of Sb-doped PbS nanocrystal building blocks. Materials. 14(4), 853.
  mla: Cadavid, Doris, et al. “Synthesis, Bottom up Assembly and Thermoelectric Properties
    of Sb-Doped PbS Nanocrystal Building Blocks.” <i>Materials</i>, vol. 14, no. 4,
    853, MDPI, 2021, doi:<a href="https://doi.org/10.3390/ma14040853">10.3390/ma14040853</a>.
  short: D. Cadavid, K. Wei, Y. Liu, Y. Zhang, M. Li, A. Genç, T. Berestok, M. Ibáñez,
    A. Shavel, G.S. Nolas, A. Cabot, Materials 14 (2021).
date_created: 2021-02-28T23:01:24Z
date_published: 2021-02-10T00:00:00Z
date_updated: 2023-08-07T13:50:03Z
day: '10'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.3390/ma14040853
external_id:
  isi:
  - '000624094100001'
file:
- access_level: open_access
  checksum: 76d6c7f97b810ce504ab151c9bf3524e
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-03T07:32:01Z
  date_updated: 2021-03-03T07:32:01Z
  file_id: '9218'
  file_name: 2021_Materials_Cadavid.pdf
  file_size: 2722517
  relation: main_file
  success: 1
file_date_updated: 2021-03-03T07:32:01Z
has_accepted_license: '1'
intvolume: '        14'
isi: 1
issue: '4'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
publication: Materials
publication_identifier:
  eissn:
  - 1996-1944
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Synthesis, bottom up assembly and thermoelectric properties of Sb-doped PbS
  nanocrystal building blocks
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 14
year: '2021'
...
---
_id: '9207'
abstract:
- lang: eng
  text: "In this paper we experimentally study the transitional range of Reynolds
    numbers in\r\nplane Couette–Poiseuille flow, focusing our attention on the localized
    turbulent structures\r\ntriggered by a strong impulsive jet and the large-scale
    flow generated around these\r\nstructures. We present a detailed investigation
    of the large-scale flow and show how\r\nits amplitude depends on Reynolds number
    and amplitude perturbation. In addition,\r\nwe characterize the initial dynamics
    of the localized turbulent spot, which includes the\r\ncoupling between the small
    and large scales, as well as the dependence of the advection\r\nspeed on the large-scale
    flow generated around the spot. Finally, we provide the first\r\nexperimental
    measurements of the large-scale flow around an oblique turbulent band."
acknowledgement: "We thank Y. Duguet, S. Gomé, G. Lemoult, T. Liu, B. Semin and L.S.
  Tuckerman for\r\nfruitful discussions. \r\nThis work was supported by a grant, TRANSFLOW,
  provided by the Agence Nationale de\r\nla Recherche (ANR). A.M.P. was partially
  supported by the French Embassy in Russia (I.I. Mechnikov scholarship) and by the
  Russian Science Foundation (project no. 18-79-00189). L.K. was partially supported
  by the European Union’s Horizon 2020 research and innovation programme under the
  Marie Skłodowska-Curie grant agreement no. 754411."
article_number: A24
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lukasz
  full_name: Klotz, Lukasz
  id: 2C9AF1C2-F248-11E8-B48F-1D18A9856A87
  last_name: Klotz
  orcid: 0000-0003-1740-7635
- first_name: A. M.
  full_name: Pavlenko, A. M.
  last_name: Pavlenko
- first_name: J. E.
  full_name: Wesfreid, J. E.
  last_name: Wesfreid
citation:
  ama: 'Klotz L, Pavlenko AM, Wesfreid JE. Experimental measurements in plane Couette-Poiseuille
    flow: Dynamics of the large- and small-scale flow. <i>Journal of Fluid Mechanics</i>.
    2021;912. doi:<a href="https://doi.org/10.1017/jfm.2020.1089">10.1017/jfm.2020.1089</a>'
  apa: 'Klotz, L., Pavlenko, A. M., &#38; Wesfreid, J. E. (2021). Experimental measurements
    in plane Couette-Poiseuille flow: Dynamics of the large- and small-scale flow.
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href="https://doi.org/10.1017/jfm.2020.1089">https://doi.org/10.1017/jfm.2020.1089</a>'
  chicago: 'Klotz, Lukasz, A. M. Pavlenko, and J. E. Wesfreid. “Experimental Measurements
    in Plane Couette-Poiseuille Flow: Dynamics of the Large- and Small-Scale Flow.”
    <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2021. <a href="https://doi.org/10.1017/jfm.2020.1089">https://doi.org/10.1017/jfm.2020.1089</a>.'
  ieee: 'L. Klotz, A. M. Pavlenko, and J. E. Wesfreid, “Experimental measurements
    in plane Couette-Poiseuille flow: Dynamics of the large- and small-scale flow,”
    <i>Journal of Fluid Mechanics</i>, vol. 912. Cambridge University Press, 2021.'
  ista: 'Klotz L, Pavlenko AM, Wesfreid JE. 2021. Experimental measurements in plane
    Couette-Poiseuille flow: Dynamics of the large- and small-scale flow. Journal
    of Fluid Mechanics. 912, A24.'
  mla: 'Klotz, Lukasz, et al. “Experimental Measurements in Plane Couette-Poiseuille
    Flow: Dynamics of the Large- and Small-Scale Flow.” <i>Journal of Fluid Mechanics</i>,
    vol. 912, A24, Cambridge University Press, 2021, doi:<a href="https://doi.org/10.1017/jfm.2020.1089">10.1017/jfm.2020.1089</a>.'
  short: L. Klotz, A.M. Pavlenko, J.E. Wesfreid, Journal of Fluid Mechanics 912 (2021).
date_created: 2021-02-28T23:01:25Z
date_published: 2021-02-15T00:00:00Z
date_updated: 2023-08-07T13:55:40Z
day: '15'
ddc:
- '530'
department:
- _id: BjHo
doi: 10.1017/jfm.2020.1089
ec_funded: 1
external_id:
  isi:
  - '000618034400001'
file:
- access_level: open_access
  checksum: b8020d6338667673e34fde0608913dd2
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-03T09:49:34Z
  date_updated: 2021-03-03T09:49:34Z
  file_id: '9220'
  file_name: 2021_JourFluidMechanics_Klotz.pdf
  file_size: 4124471
  relation: main_file
  success: 1
file_date_updated: 2021-03-03T09:49:34Z
has_accepted_license: '1'
intvolume: '       912'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: Journal of Fluid Mechanics
publication_identifier:
  eissn:
  - 1469-7645
  issn:
  - 0022-1120
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Experimental measurements in plane Couette-Poiseuille flow: Dynamics of the
  large- and small-scale flow'
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 912
year: '2021'
...
---
_id: '9210'
abstract:
- lang: eng
  text: "Modern neural networks can easily fit their training set perfectly. Surprisingly,
    despite being “overfit” in this way, they tend to generalize well to future data,
    thereby defying the classic bias–variance trade-off of machine learning theory.
    Of the many possible explanations, a prevalent one is that training by stochastic
    gradient descent (SGD) imposes an implicit bias that leads it to learn simple
    functions, and these simple functions generalize well. However, the specifics
    of this implicit bias are not well understood.\r\nIn this work, we explore the
    smoothness conjecture which states that SGD is implicitly biased towards learning
    functions that are smooth. We propose several measures to formalize the intuitive
    notion of smoothness, and we conduct experiments to determine whether SGD indeed
    implicitly optimizes for these measures. Our findings rule out the possibility
    that smoothness measures based on first-order derivatives are being implicitly
    enforced. They are supportive, though, of the smoothness conjecture for measures
    based on second-order derivatives."
article_processing_charge: No
author:
- first_name: Vaclav
  full_name: Volhejn, Vaclav
  id: d5235fb4-7a6d-11eb-b254-f25d12d631a8
  last_name: Volhejn
- first_name: Christoph
  full_name: Lampert, Christoph
  id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
  last_name: Lampert
  orcid: 0000-0001-8622-7887
citation:
  ama: 'Volhejn V, Lampert C. Does SGD implicitly optimize for smoothness? In: <i>42nd
    German Conference on Pattern Recognition</i>. Vol 12544. LNCS. Springer; 2021:246-259.
    doi:<a href="https://doi.org/10.1007/978-3-030-71278-5_18">10.1007/978-3-030-71278-5_18</a>'
  apa: 'Volhejn, V., &#38; Lampert, C. (2021). Does SGD implicitly optimize for smoothness?
    In <i>42nd German Conference on Pattern Recognition</i> (Vol. 12544, pp. 246–259).
    Tübingen, Germany: Springer. <a href="https://doi.org/10.1007/978-3-030-71278-5_18">https://doi.org/10.1007/978-3-030-71278-5_18</a>'
  chicago: Volhejn, Vaclav, and Christoph Lampert. “Does SGD Implicitly Optimize for
    Smoothness?” In <i>42nd German Conference on Pattern Recognition</i>, 12544:246–59.
    LNCS. Springer, 2021. <a href="https://doi.org/10.1007/978-3-030-71278-5_18">https://doi.org/10.1007/978-3-030-71278-5_18</a>.
  ieee: V. Volhejn and C. Lampert, “Does SGD implicitly optimize for smoothness?,”
    in <i>42nd German Conference on Pattern Recognition</i>, Tübingen, Germany, 2021,
    vol. 12544, pp. 246–259.
  ista: 'Volhejn V, Lampert C. 2021. Does SGD implicitly optimize for smoothness?
    42nd German Conference on Pattern Recognition. DAGM GCPR: German Conference on
    Pattern Recognition LNCS vol. 12544, 246–259.'
  mla: Volhejn, Vaclav, and Christoph Lampert. “Does SGD Implicitly Optimize for Smoothness?”
    <i>42nd German Conference on Pattern Recognition</i>, vol. 12544, Springer, 2021,
    pp. 246–59, doi:<a href="https://doi.org/10.1007/978-3-030-71278-5_18">10.1007/978-3-030-71278-5_18</a>.
  short: V. Volhejn, C. Lampert, in:, 42nd German Conference on Pattern Recognition,
    Springer, 2021, pp. 246–259.
conference:
  end_date: 2020-10-01
  location: Tübingen, Germany
  name: 'DAGM GCPR: German Conference on Pattern Recognition '
  start_date: 2020-09-28
date_created: 2021-03-01T09:01:16Z
date_published: 2021-03-17T00:00:00Z
date_updated: 2022-08-12T07:28:47Z
day: '17'
ddc:
- '510'
department:
- _id: ChLa
doi: 10.1007/978-3-030-71278-5_18
file:
- access_level: open_access
  checksum: 3e3628ab1cf658d82524963f808004ea
  content_type: application/pdf
  creator: dernst
  date_created: 2022-08-12T07:27:58Z
  date_updated: 2022-08-12T07:27:58Z
  file_id: '11820'
  file_name: 2020_GCPR_submitted_Volhejn.pdf
  file_size: 420234
  relation: main_file
  success: 1
file_date_updated: 2022-08-12T07:27:58Z
has_accepted_license: '1'
intvolume: '     12544'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Submitted Version
page: 246-259
publication: 42nd German Conference on Pattern Recognition
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030712778'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Does SGD implicitly optimize for smoothness?
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12544
year: '2021'
...
---
_id: '9212'
abstract:
- lang: eng
  text: Plant fitness is largely dependent on the root, the underground organ, which,
    besides its anchoring function, supplies the plant body with water and all nutrients
    necessary for growth and development. To exploit the soil effectively, roots must
    constantly integrate environmental signals and react through adjustment of growth
    and development. Important components of the root management strategy involve
    a rapid modulation of the root growth kinetics and growth direction, as well as
    an increase of the root system radius through formation of lateral roots (LRs).
    At the molecular level, such a fascinating growth and developmental flexibility
    of root organ requires regulatory networks that guarantee stability of the developmental
    program but also allows integration of various environmental inputs. The plant
    hormone auxin is one of the principal endogenous regulators of root system architecture
    by controlling primary root growth and formation of LR. In this review, we discuss
    recent progress in understanding molecular networks where auxin is one of the
    main players shaping the root system and acting as mediator between endogenous
    cues and environmental factors.
acknowledgement: We apologize to all the authors whose scientific work could not be
  cited and discussed because of space restrictions. We thank Dr. Inge Verstraeten
  (ISTAustria) and Dr. Juan Carlos Montesinos-Lopez (ETH Zürich) for helpful suggestions.
  This work was supported by the DOC Fellowship Programme of the Austrian Academy
  of Sciences (25008) to C.A.
article_number: a039941
article_processing_charge: No
article_type: original
author:
- first_name: Nicola
  full_name: Cavallari, Nicola
  id: 457160E6-F248-11E8-B48F-1D18A9856A87
  last_name: Cavallari
- first_name: Christina
  full_name: Artner, Christina
  id: 45DF286A-F248-11E8-B48F-1D18A9856A87
  last_name: Artner
- first_name: Eva
  full_name: Benková, Eva
  id: 38F4F166-F248-11E8-B48F-1D18A9856A87
  last_name: Benková
  orcid: 0000-0002-8510-9739
citation:
  ama: Cavallari N, Artner C, Benková E. Auxin-regulated lateral root organogenesis.
    <i>Cold Spring Harbor Perspectives in Biology</i>. 2021;13(7). doi:<a href="https://doi.org/10.1101/cshperspect.a039941">10.1101/cshperspect.a039941</a>
  apa: Cavallari, N., Artner, C., &#38; Benková, E. (2021). Auxin-regulated lateral
    root organogenesis. <i>Cold Spring Harbor Perspectives in Biology</i>. Cold Spring
    Harbor Laboratory Press. <a href="https://doi.org/10.1101/cshperspect.a039941">https://doi.org/10.1101/cshperspect.a039941</a>
  chicago: Cavallari, Nicola, Christina Artner, and Eva Benková. “Auxin-Regulated
    Lateral Root Organogenesis.” <i>Cold Spring Harbor Perspectives in Biology</i>.
    Cold Spring Harbor Laboratory Press, 2021. <a href="https://doi.org/10.1101/cshperspect.a039941">https://doi.org/10.1101/cshperspect.a039941</a>.
  ieee: N. Cavallari, C. Artner, and E. Benková, “Auxin-regulated lateral root organogenesis,”
    <i>Cold Spring Harbor Perspectives in Biology</i>, vol. 13, no. 7. Cold Spring
    Harbor Laboratory Press, 2021.
  ista: Cavallari N, Artner C, Benková E. 2021. Auxin-regulated lateral root organogenesis.
    Cold Spring Harbor Perspectives in Biology. 13(7), a039941.
  mla: Cavallari, Nicola, et al. “Auxin-Regulated Lateral Root Organogenesis.” <i>Cold
    Spring Harbor Perspectives in Biology</i>, vol. 13, no. 7, a039941, Cold Spring
    Harbor Laboratory Press, 2021, doi:<a href="https://doi.org/10.1101/cshperspect.a039941">10.1101/cshperspect.a039941</a>.
  short: N. Cavallari, C. Artner, E. Benková, Cold Spring Harbor Perspectives in Biology
    13 (2021).
date_created: 2021-03-01T10:08:32Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2023-09-27T06:44:06Z
day: '01'
department:
- _id: EvBe
doi: 10.1101/cshperspect.a039941
external_id:
  isi:
  - '000692069100001'
  pmid:
  - '33558367'
intvolume: '        13'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1101/cshperspect.a039941
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2685A872-B435-11E9-9278-68D0E5697425
  name: Hormonal regulation of plant adaptive responses to environmental signals
publication: Cold Spring Harbor Perspectives in Biology
publication_identifier:
  issn:
  - 1943-0264
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin-regulated lateral root organogenesis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '9224'
abstract:
- lang: eng
  text: We re-examine attempts to study the many-body localization transition using
    measures that are physically natural on the ergodic/quantum chaotic regime of
    the phase diagram. Using simple scaling arguments and an analysis of various models
    for which rigorous results are available, we find that these measures can be particularly
    adversely affected by the strong finite-size effects observed in nearly all numerical
    studies of many-body localization. This severely impacts their utility in probing
    the transition and the localized phase. In light of this analysis, we discuss
    a recent study (Šuntajs et al., 2020) of the behaviour of the Thouless energy
    and level repulsion in disordered spin chains, and its implications for the question
    of whether MBL is a true phase of matter.
article_number: '168415'
article_processing_charge: No
article_type: original
arxiv: 1
author:
- first_name: D. A.
  full_name: Abanin, D. A.
  last_name: Abanin
- first_name: J. H.
  full_name: Bardarson, J. H.
  last_name: Bardarson
- first_name: G.
  full_name: De Tomasi, G.
  last_name: De Tomasi
- first_name: S.
  full_name: Gopalakrishnan, S.
  last_name: Gopalakrishnan
- first_name: V.
  full_name: Khemani, V.
  last_name: Khemani
- first_name: S. A.
  full_name: Parameswaran, S. A.
  last_name: Parameswaran
- first_name: F.
  full_name: Pollmann, F.
  last_name: Pollmann
- first_name: A. C.
  full_name: Potter, A. C.
  last_name: Potter
- first_name: Maksym
  full_name: Serbyn, Maksym
  id: 47809E7E-F248-11E8-B48F-1D18A9856A87
  last_name: Serbyn
  orcid: 0000-0002-2399-5827
- first_name: R.
  full_name: Vasseur, R.
  last_name: Vasseur
citation:
  ama: 'Abanin DA, Bardarson JH, De Tomasi G, et al. Distinguishing localization from
    chaos: Challenges in finite-size systems. <i>Annals of Physics</i>. 2021;427(4).
    doi:<a href="https://doi.org/10.1016/j.aop.2021.168415">10.1016/j.aop.2021.168415</a>'
  apa: 'Abanin, D. A., Bardarson, J. H., De Tomasi, G., Gopalakrishnan, S., Khemani,
    V., Parameswaran, S. A., … Vasseur, R. (2021). Distinguishing localization from
    chaos: Challenges in finite-size systems. <i>Annals of Physics</i>. Elsevier.
    <a href="https://doi.org/10.1016/j.aop.2021.168415">https://doi.org/10.1016/j.aop.2021.168415</a>'
  chicago: 'Abanin, D. A., J. H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani,
    S. A. Parameswaran, F. Pollmann, A. C. Potter, Maksym Serbyn, and R. Vasseur.
    “Distinguishing Localization from Chaos: Challenges in Finite-Size Systems.” <i>Annals
    of Physics</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.aop.2021.168415">https://doi.org/10.1016/j.aop.2021.168415</a>.'
  ieee: 'D. A. Abanin <i>et al.</i>, “Distinguishing localization from chaos: Challenges
    in finite-size systems,” <i>Annals of Physics</i>, vol. 427, no. 4. Elsevier,
    2021.'
  ista: 'Abanin DA, Bardarson JH, De Tomasi G, Gopalakrishnan S, Khemani V, Parameswaran
    SA, Pollmann F, Potter AC, Serbyn M, Vasseur R. 2021. Distinguishing localization
    from chaos: Challenges in finite-size systems. Annals of Physics. 427(4), 168415.'
  mla: 'Abanin, D. A., et al. “Distinguishing Localization from Chaos: Challenges
    in Finite-Size Systems.” <i>Annals of Physics</i>, vol. 427, no. 4, 168415, Elsevier,
    2021, doi:<a href="https://doi.org/10.1016/j.aop.2021.168415">10.1016/j.aop.2021.168415</a>.'
  short: D.A. Abanin, J.H. Bardarson, G. De Tomasi, S. Gopalakrishnan, V. Khemani,
    S.A. Parameswaran, F. Pollmann, A.C. Potter, M. Serbyn, R. Vasseur, Annals of
    Physics 427 (2021).
date_created: 2021-03-07T23:01:25Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2023-08-07T13:58:30Z
day: '01'
department:
- _id: MaSe
doi: 10.1016/j.aop.2021.168415
external_id:
  arxiv:
  - '1911.04501'
  isi:
  - '000634879800007'
intvolume: '       427'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/1911.04501
month: '04'
oa: 1
oa_version: Preprint
publication: Annals of Physics
publication_identifier:
  eissn:
  - 1096035X
  issn:
  - '00034916'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Distinguishing localization from chaos: Challenges in finite-size systems'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 427
year: '2021'
...
---
_id: '9225'
abstract:
- lang: eng
  text: "The Landau–Pekar equations describe the dynamics of a strongly coupled polaron.\r\nHere,
    we provide a class of initial data for which the associated effective Hamiltonian\r\nhas
    a uniform spectral gap for all times. For such initial data, this allows us to
    extend the\r\nresults on the adiabatic theorem for the Landau–Pekar equations
    and their derivation\r\nfrom the Fröhlich model obtained in previous works to
    larger times."
acknowledgement: Funding from the European Union’s Horizon 2020 research and innovation
  programme under the ERC Grant Agreement No 694227 (D.F. and R.S.) and under the
  Marie Skłodowska-Curie Grant Agreement No. 754411 (S.R.) is gratefully acknowledged.
  Open Access funding provided by Institute of Science and Technology (IST Austria)
article_number: '19'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Dario
  full_name: Feliciangeli, Dario
  id: 41A639AA-F248-11E8-B48F-1D18A9856A87
  last_name: Feliciangeli
  orcid: 0000-0003-0754-8530
- first_name: Simone Anna Elvira
  full_name: Rademacher, Simone Anna Elvira
  id: 856966FE-A408-11E9-977E-802DE6697425
  last_name: Rademacher
  orcid: 0000-0001-5059-4466
- first_name: Robert
  full_name: Seiringer, Robert
  id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
  last_name: Seiringer
  orcid: 0000-0002-6781-0521
citation:
  ama: Feliciangeli D, Rademacher SAE, Seiringer R. Persistence of the spectral gap
    for the Landau–Pekar equations. <i>Letters in Mathematical Physics</i>. 2021;111.
    doi:<a href="https://doi.org/10.1007/s11005-020-01350-5">10.1007/s11005-020-01350-5</a>
  apa: Feliciangeli, D., Rademacher, S. A. E., &#38; Seiringer, R. (2021). Persistence
    of the spectral gap for the Landau–Pekar equations. <i>Letters in Mathematical
    Physics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11005-020-01350-5">https://doi.org/10.1007/s11005-020-01350-5</a>
  chicago: Feliciangeli, Dario, Simone Anna Elvira Rademacher, and Robert Seiringer.
    “Persistence of the Spectral Gap for the Landau–Pekar Equations.” <i>Letters in
    Mathematical Physics</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s11005-020-01350-5">https://doi.org/10.1007/s11005-020-01350-5</a>.
  ieee: D. Feliciangeli, S. A. E. Rademacher, and R. Seiringer, “Persistence of the
    spectral gap for the Landau–Pekar equations,” <i>Letters in Mathematical Physics</i>,
    vol. 111. Springer Nature, 2021.
  ista: Feliciangeli D, Rademacher SAE, Seiringer R. 2021. Persistence of the spectral
    gap for the Landau–Pekar equations. Letters in Mathematical Physics. 111, 19.
  mla: Feliciangeli, Dario, et al. “Persistence of the Spectral Gap for the Landau–Pekar
    Equations.” <i>Letters in Mathematical Physics</i>, vol. 111, 19, Springer Nature,
    2021, doi:<a href="https://doi.org/10.1007/s11005-020-01350-5">10.1007/s11005-020-01350-5</a>.
  short: D. Feliciangeli, S.A.E. Rademacher, R. Seiringer, Letters in Mathematical
    Physics 111 (2021).
date_created: 2021-03-07T23:01:25Z
date_published: 2021-02-11T00:00:00Z
date_updated: 2023-09-07T13:30:11Z
day: '11'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01350-5
ec_funded: 1
external_id:
  isi:
  - '000617195700001'
file:
- access_level: open_access
  checksum: ffbfe1aad623bce7ff529c207e343b53
  content_type: application/pdf
  creator: dernst
  date_created: 2021-03-09T11:44:34Z
  date_updated: 2021-03-09T11:44:34Z
  file_id: '9232'
  file_name: 2021_LettersMathPhysics_Feliciangeli.pdf
  file_size: 391205
  relation: main_file
  success: 1
file_date_updated: 2021-03-09T11:44:34Z
has_accepted_license: '1'
intvolume: '       111'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '694227'
  name: Analysis of quantum many-body systems
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
  eissn:
  - '15730530'
  issn:
  - '03779017'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
  record:
  - id: '9733'
    relation: dissertation_contains
    status: public
scopus_import: '1'
status: public
title: Persistence of the spectral gap for the Landau–Pekar equations
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 111
year: '2021'
...
---
_id: '9226'
abstract:
- lang: eng
  text: 'Half a century after Lewis Wolpert''s seminal conceptual advance on how cellular
    fates distribute in space, we provide a brief historical perspective on how the
    concept of positional information emerged and influenced the field of developmental
    biology and beyond. We focus on a modern interpretation of this concept in terms
    of information theory, largely centered on its application to cell specification
    in the early Drosophila embryo. We argue that a true physical variable (position)
    is encoded in local concentrations of patterning molecules, that this mapping
    is stochastic, and that the processes by which positions and corresponding cell
    fates are determined based on these concentrations need to take such stochasticity
    into account. With this approach, we shift the focus from biological mechanisms,
    molecules, genes and pathways to quantitative systems-level questions: where does
    positional information reside, how it is transformed and accessed during development,
    and what fundamental limits it is subject to?'
acknowledgement: This work was supported in part by the National Science Foundation,
  through the Center for the Physics of Biological Function (PHY-1734030), by the
  National Institutes of Health (R01GM097275) and by the Fonds zur Förderung der wissenschaftlichen
  Forschung (FWF P28844). Deposited in PMC for release after 12 months.
article_number: dev176065
article_processing_charge: No
article_type: original
author:
- first_name: Gašper
  full_name: Tkačik, Gašper
  id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
  last_name: Tkačik
  orcid: 0000-0002-6699-1455
- first_name: Thomas
  full_name: Gregor, Thomas
  last_name: Gregor
citation:
  ama: Tkačik G, Gregor T. The many bits of positional information. <i>Development</i>.
    2021;148(2). doi:<a href="https://doi.org/10.1242/dev.176065">10.1242/dev.176065</a>
  apa: Tkačik, G., &#38; Gregor, T. (2021). The many bits of positional information.
    <i>Development</i>. The Company of Biologists. <a href="https://doi.org/10.1242/dev.176065">https://doi.org/10.1242/dev.176065</a>
  chicago: Tkačik, Gašper, and Thomas Gregor. “The Many Bits of Positional Information.”
    <i>Development</i>. The Company of Biologists, 2021. <a href="https://doi.org/10.1242/dev.176065">https://doi.org/10.1242/dev.176065</a>.
  ieee: G. Tkačik and T. Gregor, “The many bits of positional information,” <i>Development</i>,
    vol. 148, no. 2. The Company of Biologists, 2021.
  ista: Tkačik G, Gregor T. 2021. The many bits of positional information. Development.
    148(2), dev176065.
  mla: Tkačik, Gašper, and Thomas Gregor. “The Many Bits of Positional Information.”
    <i>Development</i>, vol. 148, no. 2, dev176065, The Company of Biologists, 2021,
    doi:<a href="https://doi.org/10.1242/dev.176065">10.1242/dev.176065</a>.
  short: G. Tkačik, T. Gregor, Development 148 (2021).
date_created: 2021-03-07T23:01:25Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-08-07T13:57:30Z
day: '01'
department:
- _id: GaTk
doi: 10.1242/dev.176065
external_id:
  isi:
  - '000613906000007'
  pmid:
  - '33526425'
intvolume: '       148'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://doi.org/10.1242/dev.176065
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 254E9036-B435-11E9-9278-68D0E5697425
  call_identifier: FWF
  grant_number: P28844-B27
  name: Biophysics of information processing in gene regulation
publication: Development
publication_identifier:
  eissn:
  - 1477-9129
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
scopus_import: '1'
status: public
title: The many bits of positional information
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 148
year: '2021'
...
---
_id: '9227'
abstract:
- lang: eng
  text: In the multiway cut problem we are given a weighted undirected graph   G=(V,E)  and
    a set   T⊆V  of k terminals. The goal is to find a minimum weight set of edges   E′⊆E  with
    the property that by removing   E′  from G all the terminals become disconnected.
    In this paper we present a simple local search approximation algorithm for the
    multiway cut problem with approximation ratio   2−2k . We present an experimental
    evaluation of the performance of our local search algorithm and show that it greatly
    outperforms the isolation heuristic of Dalhaus et al. and it has similar performance
    as the much more complex algorithms of Calinescu et al., Sharma and Vondrak, and
    Buchbinder et al. which have the currently best known approximation ratios for
    this problem.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Andrew
  full_name: Bloch-Hansen, Andrew
  last_name: Bloch-Hansen
- first_name: Nasim
  full_name: Samei, Nasim
  id: C1531CAE-36E9-11EA-845F-33AA3DDC885E
  last_name: Samei
- first_name: Roberto
  full_name: Solis-Oba, Roberto
  last_name: Solis-Oba
citation:
  ama: 'Bloch-Hansen A, Samei N, Solis-Oba R. Experimental evaluation of a local search
    approximation algorithm for the multiway cut problem. In: <i>Conference on Algorithms
    and Discrete Applied Mathematics</i>. Vol 12601. Springer Nature; 2021:346-358.
    doi:<a href="https://doi.org/10.1007/978-3-030-67899-9_28">10.1007/978-3-030-67899-9_28</a>'
  apa: 'Bloch-Hansen, A., Samei, N., &#38; Solis-Oba, R. (2021). Experimental evaluation
    of a local search approximation algorithm for the multiway cut problem. In <i>Conference
    on Algorithms and Discrete Applied Mathematics</i> (Vol. 12601, pp. 346–358).
    Rupnagar, India: Springer Nature. <a href="https://doi.org/10.1007/978-3-030-67899-9_28">https://doi.org/10.1007/978-3-030-67899-9_28</a>'
  chicago: Bloch-Hansen, Andrew, Nasim Samei, and Roberto Solis-Oba. “Experimental
    Evaluation of a Local Search Approximation Algorithm for the Multiway Cut Problem.”
    In <i>Conference on Algorithms and Discrete Applied Mathematics</i>, 12601:346–58.
    Springer Nature, 2021. <a href="https://doi.org/10.1007/978-3-030-67899-9_28">https://doi.org/10.1007/978-3-030-67899-9_28</a>.
  ieee: A. Bloch-Hansen, N. Samei, and R. Solis-Oba, “Experimental evaluation of a
    local search approximation algorithm for the multiway cut problem,” in <i>Conference
    on Algorithms and Discrete Applied Mathematics</i>, Rupnagar, India, 2021, vol.
    12601, pp. 346–358.
  ista: 'Bloch-Hansen A, Samei N, Solis-Oba R. 2021. Experimental evaluation of a
    local search approximation algorithm for the multiway cut problem. Conference
    on Algorithms and Discrete Applied Mathematics. CALDAM: Conference on Algorithms
    and Discrete Applied Mathematics, LNCS, vol. 12601, 346–358.'
  mla: Bloch-Hansen, Andrew, et al. “Experimental Evaluation of a Local Search Approximation
    Algorithm for the Multiway Cut Problem.” <i>Conference on Algorithms and Discrete
    Applied Mathematics</i>, vol. 12601, Springer Nature, 2021, pp. 346–58, doi:<a
    href="https://doi.org/10.1007/978-3-030-67899-9_28">10.1007/978-3-030-67899-9_28</a>.
  short: A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and
    Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358.
conference:
  end_date: 2021-02-13
  location: Rupnagar, India
  name: 'CALDAM: Conference on Algorithms and Discrete Applied Mathematics'
  start_date: 2021-02-11
date_created: 2021-03-07T23:01:25Z
date_published: 2021-01-28T00:00:00Z
date_updated: 2023-10-10T09:29:08Z
day: '28'
department:
- _id: VlKo
doi: 10.1007/978-3-030-67899-9_28
intvolume: '     12601'
language:
- iso: eng
month: '01'
oa_version: None
page: 346-358
publication: Conference on Algorithms and Discrete Applied Mathematics
publication_identifier:
  eissn:
  - 1611-3349
  isbn:
  - '9783030678982'
  issn:
  - 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental evaluation of a local search approximation algorithm for the multiway
  cut problem
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12601
year: '2021'
...
---
_id: '9228'
abstract:
- lang: eng
  text: Legacy conferences are costly and time consuming, and exclude scientists lacking
    various resources or abilities. During the 2020 pandemic, we created an online
    conference platform, Neuromatch Conferences (NMC), aimed at developing technological
    and cultural changes to make conferences more democratic, scalable, and accessible.
    We discuss the lessons we learned.
acknowledgement: We thank all of our volunteers from the NMC conferences (list of
  names in the appendix). We also thank the NSF for support from 1734220 to B.W.,
  and DARPA for support to T.A.
article_processing_charge: No
article_type: original
author:
- first_name: Titipat
  full_name: Achakulvisut, Titipat
  last_name: Achakulvisut
- first_name: Tulakan
  full_name: Ruangrong, Tulakan
  last_name: Ruangrong
- first_name: Patrick
  full_name: Mineault, Patrick
  last_name: Mineault
- first_name: Tim P
  full_name: Vogels, Tim P
  id: CB6FF8D2-008F-11EA-8E08-2637E6697425
  last_name: Vogels
  orcid: 0000-0003-3295-6181
- first_name: Megan A.K.
  full_name: Peters, Megan A.K.
  last_name: Peters
- first_name: Panayiota
  full_name: Poirazi, Panayiota
  last_name: Poirazi
- first_name: Christopher
  full_name: Rozell, Christopher
  last_name: Rozell
- first_name: Brad
  full_name: Wyble, Brad
  last_name: Wyble
- first_name: Dan F.M.
  full_name: Goodman, Dan F.M.
  last_name: Goodman
- first_name: Konrad Paul
  full_name: Kording, Konrad Paul
  last_name: Kording
citation:
  ama: 'Achakulvisut T, Ruangrong T, Mineault P, et al. Towards democratizing and
    automating online conferences: Lessons from the Neuromatch Conferences. <i>Trends
    in Cognitive Sciences</i>. 2021;25(4):265-268. doi:<a href="https://doi.org/10.1016/j.tics.2021.01.007">10.1016/j.tics.2021.01.007</a>'
  apa: 'Achakulvisut, T., Ruangrong, T., Mineault, P., Vogels, T. P., Peters, M. A.
    K., Poirazi, P., … Kording, K. P. (2021). Towards democratizing and automating
    online conferences: Lessons from the Neuromatch Conferences. <i>Trends in Cognitive
    Sciences</i>. Elsevier. <a href="https://doi.org/10.1016/j.tics.2021.01.007">https://doi.org/10.1016/j.tics.2021.01.007</a>'
  chicago: 'Achakulvisut, Titipat, Tulakan Ruangrong, Patrick Mineault, Tim P Vogels,
    Megan A.K. Peters, Panayiota Poirazi, Christopher Rozell, Brad Wyble, Dan F.M.
    Goodman, and Konrad Paul Kording. “Towards Democratizing and Automating Online
    Conferences: Lessons from the Neuromatch Conferences.” <i>Trends in Cognitive
    Sciences</i>. Elsevier, 2021. <a href="https://doi.org/10.1016/j.tics.2021.01.007">https://doi.org/10.1016/j.tics.2021.01.007</a>.'
  ieee: 'T. Achakulvisut <i>et al.</i>, “Towards democratizing and automating online
    conferences: Lessons from the Neuromatch Conferences,” <i>Trends in Cognitive
    Sciences</i>, vol. 25, no. 4. Elsevier, pp. 265–268, 2021.'
  ista: 'Achakulvisut T, Ruangrong T, Mineault P, Vogels TP, Peters MAK, Poirazi P,
    Rozell C, Wyble B, Goodman DFM, Kording KP. 2021. Towards democratizing and automating
    online conferences: Lessons from the Neuromatch Conferences. Trends in Cognitive
    Sciences. 25(4), 265–268.'
  mla: 'Achakulvisut, Titipat, et al. “Towards Democratizing and Automating Online
    Conferences: Lessons from the Neuromatch Conferences.” <i>Trends in Cognitive
    Sciences</i>, vol. 25, no. 4, Elsevier, 2021, pp. 265–68, doi:<a href="https://doi.org/10.1016/j.tics.2021.01.007">10.1016/j.tics.2021.01.007</a>.'
  short: T. Achakulvisut, T. Ruangrong, P. Mineault, T.P. Vogels, M.A.K. Peters, P.
    Poirazi, C. Rozell, B. Wyble, D.F.M. Goodman, K.P. Kording, Trends in Cognitive
    Sciences 25 (2021) 265–268.
date_created: 2021-03-07T23:01:25Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2023-08-07T13:59:07Z
day: '01'
ddc:
- '570'
department:
- _id: TiVo
doi: 10.1016/j.tics.2021.01.007
external_id:
  isi:
  - '000627418000001'
  pmid:
  - '33608214'
file:
- access_level: open_access
  checksum: 87e39ea7bd266b976e8631b66979214d
  content_type: application/pdf
  creator: dernst
  date_created: 2022-05-27T07:31:24Z
  date_updated: 2022-05-27T07:31:24Z
  file_id: '11415'
  file_name: 2021_TrendsCognitiveSciences_Achakulvisut.pdf
  file_size: 380720
  relation: main_file
  success: 1
file_date_updated: 2022-05-27T07:31:24Z
has_accepted_license: '1'
intvolume: '        25'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 265-268
pmid: 1
publication: Trends in Cognitive Sciences
publication_identifier:
  eissn:
  - 1879-307X
  issn:
  - 1364-6613
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Towards democratizing and automating online conferences: Lessons from the
  Neuromatch Conferences'
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 25
year: '2021'
...
---
_id: '9230'
abstract:
- lang: eng
  text: "We consider a model of the Riemann zeta function on the critical axis and
    study its maximum over intervals of length (log T)θ, where θ is either fixed or
    tends to zero at a suitable rate.\r\nIt is shown that the deterministic level
    of the maximum interpolates smoothly between the ones\r\nof log-correlated variables
    and of i.i.d. random variables, exhibiting a smooth transition ‘from\r\n3/4 to
    1/4’ in the second order. This provides a natural context where extreme value
    statistics of\r\nlog-correlated variables with time-dependent variance and rate
    occur. A key ingredient of the\r\nproof is a precise upper tail tightness estimate
    for the maximum of the model on intervals of\r\nsize one, that includes a Gaussian
    correction. This correction is expected to be present for the\r\nRiemann zeta
    function and pertains to the question of the correct order of the maximum of\r\nthe
    zeta function in large intervals."
acknowledgement: The research of L.-P. A. is supported in part by the grant NSF CAREER
  DMS-1653602. G. D. gratefully acknowledges support from the European Union’s Horizon
  2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
  No. 754411. The research of L. H. is supported in part by the Deutsche Forschungsgemeinschaft
  (DFG, German Research Foundation) through Project-ID 233630050 -TRR 146, Project-ID
  443891315 within SPP 2265 and Project-ID 446173099.
article_number: '2103.04817'
article_processing_charge: No
arxiv: 1
author:
- first_name: Louis-Pierre
  full_name: Arguin, Louis-Pierre
  last_name: Arguin
- first_name: Guillaume
  full_name: Dubach, Guillaume
  id: D5C6A458-10C4-11EA-ABF4-A4B43DDC885E
  last_name: Dubach
  orcid: 0000-0001-6892-8137
- first_name: Lisa
  full_name: Hartung, Lisa
  last_name: Hartung
citation:
  ama: Arguin L-P, Dubach G, Hartung L. Maxima of a random model of the Riemann zeta
    function over intervals of varying length. <i>arXiv</i>. doi:<a href="https://doi.org/10.48550/arXiv.2103.04817">10.48550/arXiv.2103.04817</a>
  apa: Arguin, L.-P., Dubach, G., &#38; Hartung, L. (n.d.). Maxima of a random model
    of the Riemann zeta function over intervals of varying length. <i>arXiv</i>. <a
    href="https://doi.org/10.48550/arXiv.2103.04817">https://doi.org/10.48550/arXiv.2103.04817</a>
  chicago: Arguin, Louis-Pierre, Guillaume Dubach, and Lisa Hartung. “Maxima of a
    Random Model of the Riemann Zeta Function over Intervals of Varying Length.” <i>ArXiv</i>,
    n.d. <a href="https://doi.org/10.48550/arXiv.2103.04817">https://doi.org/10.48550/arXiv.2103.04817</a>.
  ieee: L.-P. Arguin, G. Dubach, and L. Hartung, “Maxima of a random model of the
    Riemann zeta function over intervals of varying length,” <i>arXiv</i>. .
  ista: Arguin L-P, Dubach G, Hartung L. Maxima of a random model of the Riemann zeta
    function over intervals of varying length. arXiv, 2103.04817.
  mla: Arguin, Louis-Pierre, et al. “Maxima of a Random Model of the Riemann Zeta
    Function over Intervals of Varying Length.” <i>ArXiv</i>, 2103.04817, doi:<a href="https://doi.org/10.48550/arXiv.2103.04817">10.48550/arXiv.2103.04817</a>.
  short: L.-P. Arguin, G. Dubach, L. Hartung, ArXiv (n.d.).
date_created: 2021-03-09T11:08:15Z
date_published: 2021-03-08T00:00:00Z
date_updated: 2023-05-03T10:22:59Z
day: '08'
department:
- _id: LaEr
doi: 10.48550/arXiv.2103.04817
ec_funded: 1
external_id:
  arxiv:
  - '2103.04817'
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://arxiv.org/abs/2103.04817
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
  call_identifier: H2020
  grant_number: '754411'
  name: ISTplus - Postdoctoral Fellowships
publication: arXiv
publication_status: submitted
status: public
title: Maxima of a random model of the Riemann zeta function over intervals of varying
  length
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9234'
abstract:
- lang: eng
  text: In this paper, we present two new inertial projection-type methods for solving
    multivalued variational inequality problems in finite-dimensional spaces. We establish
    the convergence of the sequence generated by these methods when the multivalued
    mapping associated with the problem is only required to be locally bounded without
    any monotonicity assumption. Furthermore, the inertial techniques that we employ
    in this paper are quite different from the ones used in most papers. Moreover,
    based on the weaker assumptions on the inertial factor in our methods, we derive
    several special cases of our methods. Finally, we present some experimental results
    to illustrate the profits that we gain by introducing the inertial extrapolation
    steps.
acknowledgement: 'The authors sincerely thank the Editor-in-Chief and anonymous referees
  for their careful reading, constructive comments and fruitful suggestions that help
  improve the manuscript. The research of the first author is supported by the National
  Research Foundation (NRF) South Africa (S& F-DSI/NRF Free Standing Postdoctoral
  Fellowship; Grant Number: 120784). The first author also acknowledges the financial
  support from DSI/NRF, South Africa Center of Excellence in Mathematical and Statistical
  Sciences (CoE-MaSS) Postdoctoral Fellowship. The second author has received funding
  from the European Research Council (ERC) under the European Union’s Seventh Framework
  Program (FP7 - 2007-2013) (Grant agreement No. 616160). Open Access funding provided
  by Institute of Science and Technology (IST Austria).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Chinedu
  full_name: Izuchukwu, Chinedu
  last_name: Izuchukwu
- first_name: Yekini
  full_name: Shehu, Yekini
  id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
  last_name: Shehu
  orcid: 0000-0001-9224-7139
citation:
  ama: Izuchukwu C, Shehu Y. New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity. <i>Networks and Spatial Economics</i>.
    2021;21(2):291-323. doi:<a href="https://doi.org/10.1007/s11067-021-09517-w">10.1007/s11067-021-09517-w</a>
  apa: Izuchukwu, C., &#38; Shehu, Y. (2021). New inertial projection methods for
    solving multivalued variational inequality problems beyond monotonicity. <i>Networks
    and Spatial Economics</i>. Springer Nature. <a href="https://doi.org/10.1007/s11067-021-09517-w">https://doi.org/10.1007/s11067-021-09517-w</a>
  chicago: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods
    for Solving Multivalued Variational Inequality Problems beyond Monotonicity.”
    <i>Networks and Spatial Economics</i>. Springer Nature, 2021. <a href="https://doi.org/10.1007/s11067-021-09517-w">https://doi.org/10.1007/s11067-021-09517-w</a>.
  ieee: C. Izuchukwu and Y. Shehu, “New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity,” <i>Networks and Spatial
    Economics</i>, vol. 21, no. 2. Springer Nature, pp. 291–323, 2021.
  ista: Izuchukwu C, Shehu Y. 2021. New inertial projection methods for solving multivalued
    variational inequality problems beyond monotonicity. Networks and Spatial Economics.
    21(2), 291–323.
  mla: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods for
    Solving Multivalued Variational Inequality Problems beyond Monotonicity.” <i>Networks
    and Spatial Economics</i>, vol. 21, no. 2, Springer Nature, 2021, pp. 291–323,
    doi:<a href="https://doi.org/10.1007/s11067-021-09517-w">10.1007/s11067-021-09517-w</a>.
  short: C. Izuchukwu, Y. Shehu, Networks and Spatial Economics 21 (2021) 291–323.
date_created: 2021-03-10T12:18:47Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2023-09-05T15:32:32Z
day: '01'
ddc:
- '510'
department:
- _id: VlKo
doi: 10.1007/s11067-021-09517-w
ec_funded: 1
external_id:
  isi:
  - '000625002100001'
file:
- access_level: open_access
  checksum: 22b4253a2e5da843622a2df713784b4c
  content_type: application/pdf
  creator: kschuh
  date_created: 2021-08-11T12:44:16Z
  date_updated: 2021-08-11T12:44:16Z
  file_id: '9884'
  file_name: 2021_NetworksSpatialEconomics_Shehu.pdf
  file_size: 834964
  relation: main_file
  success: 1
file_date_updated: 2021-08-11T12:44:16Z
has_accepted_license: '1'
intvolume: '        21'
isi: 1
issue: '2'
keyword:
- Computer Networks and Communications
- Software
- Artificial Intelligence
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 291-323
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
  call_identifier: FP7
  grant_number: '616160'
  name: 'Discrete Optimization in Computer Vision: Theory and Practice'
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
  name: IST Austria Open Access Fund
publication: Networks and Spatial Economics
publication_identifier:
  eissn:
  - 1572-9427
  issn:
  - 1566-113X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New inertial projection methods for solving multivalued variational inequality
  problems beyond monotonicity
tmp:
  image: /images/cc_by.png
  legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
  name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
  short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2021'
...
---
_id: '9235'
abstract:
- lang: eng
  text: Cu2–xS has become one of the most promising thermoelectric materials for application
    in the middle-high temperature range. Its advantages include the abundance, low
    cost, and safety of its elements and a high performance at relatively elevated
    temperatures. However, stability issues limit its operation current and temperature,
    thus calling for the optimization of the material performance in the middle temperature
    range. Here, we present a synthetic protocol for large scale production of covellite
    CuS nanoparticles at ambient temperature and atmosphere, and using water as a
    solvent. The crystal phase and stoichiometry of the particles are afterward tuned
    through an annealing process at a moderate temperature under inert or reducing
    atmosphere. While annealing under argon results in Cu1.8S nanopowder with a rhombohedral
    crystal phase, annealing in an atmosphere containing hydrogen leads to tetragonal
    Cu1.96S. High temperature X-ray diffraction analysis shows the material annealed
    in argon to transform to the cubic phase at ca. 400 K, while the material annealed
    in the presence of hydrogen undergoes two phase transitions, first to hexagonal
    and then to the cubic structure. The annealing atmosphere, temperature, and time
    allow adjustment of the density of copper vacancies and thus tuning of the charge
    carrier concentration and material transport properties. In this direction, the
    material annealed under Ar is characterized by higher electrical conductivities
    but lower Seebeck coefficients than the material annealed in the presence of hydrogen.
    By optimizing the charge carrier concentration through the annealing time, Cu2–xS
    with record figures of merit in the middle temperature range, up to 1.41 at 710
    K, is obtained. We finally demonstrate that this strategy, based on a low-cost
    and scalable solution synthesis process, is also suitable for the production of
    high performance Cu2–xS layers using high throughput and cost-effective printing
    technologies.
acknowledgement: This work was supported by the European Regional Development Funds.
  M.Y.L., X.H., T.Z., and K.X. thank the China Scholarship Council for scholarship
  support. M.I. acknowledges financial support from IST Austria. J.L. acknowledges
  support from the National Natural Science Foundation of China (No. 22008091), the
  funding for scientific research startup of Jiangsu University (No. 19JDG044), and
  Jiangsu Provincial Program for High-Level Innovative and Entrepreneurial Talents
  Introduction. J.L. is a Serra Húnter fellow and is grateful to the ICREA Academia
  program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2
  acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish
  MINECO ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from Spanish
  MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat
  de Catalunya. Part of the present work has been performed in the framework of Universitat
  Autònoma de Barcelona Materials Science PhD program. T.Z. has received funding from
  the CSC-UAB PhD scholarship program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
  full_name: Li, Mengyao
  last_name: Li
- first_name: Yu
  full_name: Liu, Yu
  id: 2A70014E-F248-11E8-B48F-1D18A9856A87
  last_name: Liu
  orcid: 0000-0001-7313-6740
- first_name: Yu
  full_name: Zhang, Yu
  last_name: Zhang
- first_name: Xu
  full_name: Han, Xu
  last_name: Han
- first_name: Ting
  full_name: Zhang, Ting
  last_name: Zhang
- first_name: Yong
  full_name: Zuo, Yong
  last_name: Zuo
- first_name: Chenyang
  full_name: Xie, Chenyang
  last_name: Xie
- first_name: Ke
  full_name: Xiao, Ke
  last_name: Xiao
- first_name: Jordi
  full_name: Arbiol, Jordi
  last_name: Arbiol
- first_name: Jordi
  full_name: Llorca, Jordi
  last_name: Llorca
- first_name: Maria
  full_name: Ibáñez, Maria
  id: 43C61214-F248-11E8-B48F-1D18A9856A87
  last_name: Ibáñez
  orcid: 0000-0001-5013-2843
- first_name: Junfeng
  full_name: Liu, Junfeng
  last_name: Liu
- first_name: Andreu
  full_name: Cabot, Andreu
  last_name: Cabot
citation:
  ama: Li M, Liu Y, Zhang Y, et al. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. <i>ACS Nano</i>. 2021;15(3):4967–4978.
    doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>
  apa: Li, M., Liu, Y., Zhang, Y., Han, X., Zhang, T., Zuo, Y., … Cabot, A. (2021).
    Effect of the annealing atmosphere on crystal phase and thermoelectric properties
    of copper sulfide. <i>ACS Nano</i>. American Chemical Society . <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>
  chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ting Zhang, Yong Zuo, Chenyang Xie,
    et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric
    Properties of Copper Sulfide.” <i>ACS Nano</i>. American Chemical Society , 2021.
    <a href="https://doi.org/10.1021/acsnano.0c09866">https://doi.org/10.1021/acsnano.0c09866</a>.
  ieee: M. Li <i>et al.</i>, “Effect of the annealing atmosphere on crystal phase
    and thermoelectric properties of copper sulfide,” <i>ACS Nano</i>, vol. 15, no.
    3. American Chemical Society , pp. 4967–4978, 2021.
  ista: Li M, Liu Y, Zhang Y, Han X, Zhang T, Zuo Y, Xie C, Xiao K, Arbiol J, Llorca
    J, Ibáñez M, Liu J, Cabot A. 2021. Effect of the annealing atmosphere on crystal
    phase and thermoelectric properties of copper sulfide. ACS Nano. 15(3), 4967–4978.
  mla: Li, Mengyao, et al. “Effect of the Annealing Atmosphere on Crystal Phase and
    Thermoelectric Properties of Copper Sulfide.” <i>ACS Nano</i>, vol. 15, no. 3,
    American Chemical Society , 2021, pp. 4967–4978, doi:<a href="https://doi.org/10.1021/acsnano.0c09866">10.1021/acsnano.0c09866</a>.
  short: M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol,
    J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
date_created: 2021-03-10T20:12:45Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-10-03T09:59:55Z
day: '01'
department:
- _id: MaIb
doi: 10.1021/acsnano.0c09866
external_id:
  isi:
  - '000634569100106'
  pmid:
  - '33645986'
intvolume: '        15'
isi: 1
issue: '3'
keyword:
- General Engineering
- General Physics and Astronomy
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
  url: https://upcommons.upc.edu/bitstream/handle/2117/363528/Pb%20mengyao.pdf?sequence=1&isAllowed=y
month: '03'
oa: 1
oa_version: Submitted Version
page: 4967–4978
pmid: 1
publication: ACS Nano
publication_identifier:
  eissn:
  - 1936-086X
  issn:
  - 1936-0851
publication_status: published
publisher: 'American Chemical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of the annealing atmosphere on crystal phase and thermoelectric properties
  of copper sulfide
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2021'
...
