[{"article_processing_charge":"No","citation":{"apa":"Rueda, A., Sedlmeir, F., Collodo, M., Vogl, U., Stiller, B., Schunk, G., … Schwefel, H. (2016). Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. Presented at the NP: Nonlinear Photonics, Sydney, Australia: Optica Publishing Group. <a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">https://doi.org/10.1364/NP.2016.NTh3A.6</a>","mla":"Rueda, Alfredo, et al. <i>Nonlinear Single Sideband Microwave to Optical Conversion Using an Electro-Optic WGM-Resonator</i>. Optica Publishing Group, 2016, doi:<a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">10.1364/NP.2016.NTh3A.6</a>.","short":"A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, Optica Publishing Group, 2016.","chicago":"Rueda, Alfredo, Florian Sedlmeir, Michele Collodo, Ulrich Vogl, Birgit Stiller, Gerhard Schunk, Dmitry Strekalov, et al. “Nonlinear Single Sideband Microwave to Optical Conversion Using an Electro-Optic WGM-Resonator.” Optica Publishing Group, 2016. <a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">https://doi.org/10.1364/NP.2016.NTh3A.6</a>.","ama":"Rueda A, Sedlmeir F, Collodo M, et al. Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. In: Optica Publishing Group; 2016. doi:<a href=\"https://doi.org/10.1364/NP.2016.NTh3A.6\">10.1364/NP.2016.NTh3A.6</a>","ieee":"A. Rueda <i>et al.</i>, “Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator,” presented at the NP: Nonlinear Photonics, Sydney, Australia, 2016.","ista":"Rueda A, Sedlmeir F, Collodo M, Vogl U, Stiller B, Schunk G, Strekalov D, Marquardt C, Fink JM, Painter O, Leuchs G, Schwefel H. 2016. Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator. NP: Nonlinear Photonics, Optics InfoBase Conference Papers, ."},"publisher":"Optica Publishing Group","scopus_import":"1","title":"Nonlinear single sideband microwave to optical conversion using an electro-optic WGM-resonator","type":"conference","status":"public","date_created":"2018-12-11T11:46:43Z","doi":"10.1364/NP.2016.NTh3A.6","_id":"482","quality_controlled":"1","department":[{"_id":"JoFi"}],"alternative_title":["Optics InfoBase Conference Papers"],"author":[{"last_name":"Rueda","first_name":"Alfredo","full_name":"Rueda, Alfredo"},{"full_name":"Sedlmeir, Florian","first_name":"Florian","last_name":"Sedlmeir"},{"full_name":"Collodo, Michele","first_name":"Michele","last_name":"Collodo"},{"first_name":"Ulrich","last_name":"Vogl","full_name":"Vogl, Ulrich"},{"last_name":"Stiller","first_name":"Birgit","full_name":"Stiller, Birgit"},{"full_name":"Schunk, Gerhard","first_name":"Gerhard","last_name":"Schunk"},{"full_name":"Strekalov, Dmitry","last_name":"Strekalov","first_name":"Dmitry"},{"last_name":"Marquardt","first_name":"Christoph","full_name":"Marquardt, Christoph"},{"full_name":"Fink, Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","last_name":"Fink","orcid":"0000-0001-8112-028X"},{"full_name":"Painter, Oskar","last_name":"Painter","first_name":"Oskar"},{"full_name":"Leuchs, Gerd","last_name":"Leuchs","first_name":"Gerd"},{"first_name":"Harald","last_name":"Schwefel","full_name":"Schwefel, Harald"}],"date_published":"2016-08-29T00:00:00Z","abstract":[{"text":"Nonlinear electro-optical conversion of microwave radiation into the optical telecommunication band is achieved within a crystalline whispering gallery mode resonator, reaching 0.1% photon number conversion efficiency with MHz bandwidth.","lang":"eng"}],"month":"08","oa_version":"None","year":"2016","language":[{"iso":"eng"}],"publist_id":"7339","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"29","conference":{"start_date":"2016-09-05","end_date":"2016-09-08","name":"NP: Nonlinear Photonics","location":"Sydney, Australia"},"publication_status":"published","date_updated":"2023-10-17T12:16:43Z"},{"article_processing_charge":"No","citation":{"ista":"Liu Z, Yang N, Lv Y, Pan L, Lv S, Han H, Wang G. 2016. The CLE gene family in Populus trichocarpa. Plant Signaling &#38; Behavior. 11(6), e1191734.","ieee":"Z. Liu <i>et al.</i>, “The CLE gene family in Populus trichocarpa,” <i>Plant Signaling &#38; Behavior</i>, vol. 11, no. 6. Taylor &#38; Francis, 2016.","chicago":"Liu, Zhijun, Nan Yang, Yanting Lv, Lixia Pan, Shuo Lv, Huibin Han, and Guodong Wang. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis, 2016. <a href=\"https://doi.org/10.1080/15592324.2016.1191734\">https://doi.org/10.1080/15592324.2016.1191734</a>.","short":"Z. Liu, N. Yang, Y. Lv, L. Pan, S. Lv, H. Han, G. Wang, Plant Signaling &#38; Behavior 11 (2016).","ama":"Liu Z, Yang N, Lv Y, et al. The CLE gene family in Populus trichocarpa. <i>Plant Signaling &#38; Behavior</i>. 2016;11(6). doi:<a href=\"https://doi.org/10.1080/15592324.2016.1191734\">10.1080/15592324.2016.1191734</a>","mla":"Liu, Zhijun, et al. “The CLE Gene Family in Populus Trichocarpa.” <i>Plant Signaling &#38; Behavior</i>, vol. 11, no. 6, e1191734, Taylor &#38; Francis, 2016, doi:<a href=\"https://doi.org/10.1080/15592324.2016.1191734\">10.1080/15592324.2016.1191734</a>.","apa":"Liu, Z., Yang, N., Lv, Y., Pan, L., Lv, S., Han, H., &#38; Wang, G. (2016). The CLE gene family in Populus trichocarpa. <i>Plant Signaling &#38; Behavior</i>. Taylor &#38; Francis. <a href=\"https://doi.org/10.1080/15592324.2016.1191734\">https://doi.org/10.1080/15592324.2016.1191734</a>"},"title":"The CLE gene family in Populus trichocarpa","type":"journal_article","status":"public","doi":"10.1080/15592324.2016.1191734","_id":"510","intvolume":"        11","acknowledgement":"We are grateful to Dr. Long (Laboratoire de Reproduction et Developpement des Plantes,CNRS,INRA,ENSLyon,UCBL,Universite de Lyon,France)for critical reading of the article. Work in our group is supported by the National Natural Science Foundation of China (31271575; 31200902), the Fundamental Research Funds for the Central Univ ersities (GK201103005), the Specialized Research Fund for the Doctoral Program of Higher Education from the Ministry of Education of China (20120202120009), the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry, and the Natural Science Basic Research Plan in Shaanxi Province of China (2014JM3064). ","quality_controlled":"1","department":[{"_id":"JiFr"}],"article_number":"e1191734","month":"06","oa_version":"Submitted Version","publist_id":"7308","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","oa":1,"date_updated":"2023-10-17T11:13:40Z","publisher":"Taylor & Francis","main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4973754/"}],"scopus_import":"1","date_created":"2018-12-11T11:46:53Z","issue":"6","author":[{"last_name":"Liu","first_name":"Zhijun","full_name":"Liu, Zhijun"},{"first_name":"Nan","last_name":"Yang","full_name":"Yang, Nan"},{"first_name":"Yanting","last_name":"Lv","full_name":"Lv, Yanting"},{"last_name":"Pan","first_name":"Lixia","full_name":"Pan, Lixia"},{"last_name":"Lv","first_name":"Shuo","full_name":"Lv, Shuo"},{"id":"31435098-F248-11E8-B48F-1D18A9856A87","full_name":"Han, Huibin","first_name":"Huibin","last_name":"Han"},{"first_name":"Guodong","last_name":"Wang","full_name":"Wang, Guodong"}],"abstract":[{"text":"The CLE (CLAVATA3/Embryo Surrounding Region-related) peptides are small secreted signaling peptides that are primarily involved in the regulation of stem cell homeostasis in different plant meristems. Particularly, the characterization of the CLE41-PXY/TDR signaling pathway has greatly advanced our understanding on the potential roles of CLE peptides in vascular development and wood formation. Nevertheless, our knowledge on this gene family in a tree species is limited. In a recent study, we reported on a systematically investigation of the CLE gene family in Populus trichocarpa . The potential roles of PtCLE genes were studied by comparative analysis and transcriptional pro fi ling. Among fi fty PtCLE members, many PtCLE proteins share identical CLE motifs or contain the same CLE motif as that of AtCLEs, while PtCLE genes exhibited either comparable or distinct expression patterns comparing to their Arabidopsis counterparts. These fi ndings indicate the existence of both functional conservation and functional divergence between PtCLEs and their AtCLE orthologues. Our results provide valuable resources for future functional investigations of these critical signaling molecules in woody plants. ","lang":"eng"}],"volume":11,"date_published":"2016-06-02T00:00:00Z","publication":"Plant Signaling & Behavior","day":"02","language":[{"iso":"eng"}],"year":"2016"},{"department":[{"_id":"KrCh"}],"page":"33","_id":"5445","date_created":"2018-12-12T11:39:22Z","doi":"10.15479/AT:IST-2016-523-v1-1","pubrep_id":"523","status":"public","type":"technical_report","title":"Quantitative interprocedural analysis","citation":{"ista":"Chatterjee K, Pavlogiannis A, Velner Y. 2016. Quantitative interprocedural analysis, IST Austria, 33p.","ieee":"K. Chatterjee, A. Pavlogiannis, and Y. Velner, <i>Quantitative interprocedural analysis</i>. IST Austria, 2016.","chicago":"Chatterjee, Krishnendu, Andreas Pavlogiannis, and Yaron Velner. <i>Quantitative Interprocedural Analysis</i>. IST Austria, 2016. <a href=\"https://doi.org/10.15479/AT:IST-2016-523-v1-1\">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>.","short":"K. Chatterjee, A. Pavlogiannis, Y. Velner, Quantitative Interprocedural Analysis, IST Austria, 2016.","ama":"Chatterjee K, Pavlogiannis A, Velner Y. <i>Quantitative Interprocedural Analysis</i>. IST Austria; 2016. doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-523-v1-1\">10.15479/AT:IST-2016-523-v1-1</a>","apa":"Chatterjee, K., Pavlogiannis, A., &#38; Velner, Y. (2016). <i>Quantitative interprocedural analysis</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2016-523-v1-1\">https://doi.org/10.15479/AT:IST-2016-523-v1-1</a>","mla":"Chatterjee, Krishnendu, et al. <i>Quantitative Interprocedural Analysis</i>. IST Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-523-v1-1\">10.15479/AT:IST-2016-523-v1-1</a>."},"publisher":"IST Austria","file":[{"date_updated":"2020-07-14T12:46:58Z","content_type":"application/pdf","file_name":"IST-2016-523-v1+1_main.pdf","file_size":1012204,"access_level":"open_access","file_id":"5513","date_created":"2018-12-12T11:53:52Z","creator":"system","checksum":"cef516fa091925b5868813e355268fb4","relation":"main_file"}],"publication_identifier":{"issn":["2664-1690"]},"date_updated":"2023-02-23T10:06:22Z","ddc":["005"],"publication_status":"published","oa":1,"year":"2016","language":[{"iso":"eng"}],"related_material":{"record":[{"status":"public","relation":"later_version","id":"1604"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"31","month":"03","oa_version":"Published Version","date_published":"2016-03-31T00:00:00Z","abstract":[{"lang":"eng","text":"We consider the quantitative analysis problem for interprocedural control-flow graphs (ICFGs). The input consists of an ICFG, a positive weight function that assigns every transition a positive integer-valued number, and a labelling of the transitions (events) as good, bad, and neutral events. The weight function assigns to each transition a numerical value that represents ameasure of how good or bad an event is. The quantitative analysis problem asks whether there is a run of the ICFG where the ratio of the sum of the numerical weights of good events versus the sum of weights of bad events in the long-run is at least a given threshold (or equivalently, to compute the maximal ratio among all valid paths in the ICFG). The quantitative analysis problem for ICFGs can be solved in polynomial time, and we present an efficient and practical algorithm for the problem. We show that several problems relevant for static program analysis, such as estimating the worst-case execution time of a program or the average energy consumption of a mobile application, can be modeled in our framework. We have implemented our algorithm as a tool in the Java Soot framework. We demonstrate the effectiveness of our approach with two case studies. First, we show that our framework provides a sound approach (no false positives) for the analysis of inefficiently-used containers. Second, we show that our approach can also be used for static profiling of programs which reasons about methods that are frequently invoked. Our experimental results show that our tool scales to relatively large benchmarks, and discovers relevant and useful information that can be used to optimize performance of the programs. "}],"author":[{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu"},{"full_name":"Pavlogiannis, Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8943-0722","first_name":"Andreas","last_name":"Pavlogiannis"},{"first_name":"Yaron","last_name":"Velner","full_name":"Velner, Yaron"}],"alternative_title":["IST Austria Technical Report"],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:46:58Z"},{"publication_identifier":{"issn":["2664-1690"]},"date_updated":"2023-02-23T12:22:21Z","ddc":["519"],"oa":1,"publication_status":"published","language":[{"iso":"eng"}],"year":"2016","related_material":{"record":[{"status":"public","id":"512","relation":"later_version"}]},"day":"09","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Updated Version","month":"11","date_published":"2016-11-09T00:00:00Z","abstract":[{"lang":"eng","text":"The fixation probability is the probability that a new mutant introduced in a homogeneous population eventually takes over the entire population.\r\nThe fixation probability is a fundamental quantity of natural selection, and known to depend on the population structure.\r\nAmplifiers of natural selection are population structures which increase the fixation probability of advantageous mutants, as compared to the baseline case of well-mixed populations. In this work we focus on symmetric population structures represented as undirected graphs. In the regime of undirected graphs, the strongest amplifier known has been the Star graph, and the existence of undirected graphs with stronger amplification properties has remained open for over a decade.\r\nIn this work we present the Comet and Comet-swarm families of undirected graphs. We show that for a range of fitness values of the mutants, the Comet and Comet-swarm graphs have fixation probability strictly larger than the fixation probability of the Star graph, for fixed population size and at the limit of large populations, respectively."}],"author":[{"id":"49704004-F248-11E8-B48F-1D18A9856A87","full_name":"Pavlogiannis, Andreas","orcid":"0000-0002-8943-0722","first_name":"Andreas","last_name":"Pavlogiannis"},{"full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","first_name":"Josef","last_name":"Tkadlec","orcid":"0000-0002-1097-9684"},{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee"},{"full_name":"Nowak, Martin","last_name":"Nowak","first_name":"Martin"}],"alternative_title":["IST Austria Technical Report"],"file_date_updated":"2020-07-14T12:46:58Z","has_accepted_license":"1","department":[{"_id":"KrCh"}],"page":"22","_id":"5449","doi":"10.15479/AT:IST-2016-648-v1-1","date_created":"2018-12-12T11:39:24Z","pubrep_id":"648","status":"public","type":"technical_report","title":"Amplification on undirected population structures: Comets beat stars","citation":{"ieee":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Amplification on undirected population structures: Comets beat stars</i>. IST Austria, 2016.","ista":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Amplification on undirected population structures: Comets beat stars, IST Austria, 22p.","apa":"Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Amplification on undirected population structures: Comets beat stars</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2016-648-v1-1\">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>","mla":"Pavlogiannis, Andreas, et al. <i>Amplification on Undirected Population Structures: Comets Beat Stars</i>. IST Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-648-v1-1\">10.15479/AT:IST-2016-648-v1-1</a>.","chicago":"Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. <i>Amplification on Undirected Population Structures: Comets Beat Stars</i>. IST Austria, 2016. <a href=\"https://doi.org/10.15479/AT:IST-2016-648-v1-1\">https://doi.org/10.15479/AT:IST-2016-648-v1-1</a>.","ama":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Amplification on Undirected Population Structures: Comets Beat Stars</i>. IST Austria; 2016. doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-648-v1-1\">10.15479/AT:IST-2016-648-v1-1</a>","short":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Amplification on Undirected Population Structures: Comets Beat Stars, IST Austria, 2016."},"publisher":"IST Austria","file":[{"date_updated":"2020-07-14T12:46:58Z","content_type":"application/pdf","file_name":"IST-2016-648-v1+1_tr.pdf","file_size":1264221,"access_level":"open_access","file_id":"5529","date_created":"2018-12-12T11:54:07Z","creator":"system","checksum":"8345a8c1e7d7f0cd92516d182b7fc59e","relation":"main_file"}]},{"_id":"5451","page":"34","doi":"10.15479/AT:IST-2016-728-v1-1","date_created":"2018-12-12T11:39:24Z","department":[{"_id":"KrCh"}],"publisher":"IST Austria","file":[{"file_id":"5465","relation":"main_file","checksum":"7b8bb17c322c0556acba6ac169fa71c1","date_created":"2018-12-12T11:53:04Z","creator":"system","content_type":"application/pdf","date_updated":"2020-07-14T12:46:59Z","access_level":"open_access","file_size":1014732,"file_name":"IST-2016-728-v1+1_main.pdf"}],"citation":{"ista":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Strong amplifiers of natural selection, IST Austria, 34p.","ieee":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Strong amplifiers of natural selection</i>. IST Austria, 2016.","short":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Strong Amplifiers of Natural Selection, IST Austria, 2016.","chicago":"Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. <i>Strong Amplifiers of Natural Selection</i>. IST Austria, 2016. <a href=\"https://doi.org/10.15479/AT:IST-2016-728-v1-1\">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>.","ama":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Strong Amplifiers of Natural Selection</i>. IST Austria; 2016. doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-728-v1-1\">10.15479/AT:IST-2016-728-v1-1</a>","mla":"Pavlogiannis, Andreas, et al. <i>Strong Amplifiers of Natural Selection</i>. IST Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:IST-2016-728-v1-1\">10.15479/AT:IST-2016-728-v1-1</a>.","apa":"Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Strong amplifiers of natural selection</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2016-728-v1-1\">https://doi.org/10.15479/AT:IST-2016-728-v1-1</a>"},"type":"technical_report","status":"public","pubrep_id":"728","title":"Strong amplifiers of natural selection","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"30","language":[{"iso":"eng"}],"year":"2016","oa_version":"Published Version","month":"12","ddc":["000"],"date_updated":"2023-02-23T12:27:05Z","publication_identifier":{"issn":["2664-1690"]},"oa":1,"publication_status":"published","alternative_title":["IST Austria Technical Report"],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:46:59Z","date_published":"2016-12-30T00:00:00Z","author":[{"orcid":"0000-0002-8943-0722","first_name":"Andreas","last_name":"Pavlogiannis","id":"49704004-F248-11E8-B48F-1D18A9856A87","full_name":"Pavlogiannis, Andreas"},{"orcid":"0000-0002-1097-9684","first_name":"Josef","last_name":"Tkadlec","full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Krishnendu","last_name":"Chatterjee","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Martin","last_name":"Nowak","full_name":"Nowak, Martin"}]},{"title":"Arbitrarily strong amplifiers of natural selection","type":"technical_report","status":"public","pubrep_id":"750","article_processing_charge":"No","citation":{"ieee":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong amplifiers of natural selection</i>. IST Austria, 2016.","ista":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong amplifiers of natural selection, IST Austria, 32p.","apa":"Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily strong amplifiers of natural selection</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2017-728-v2-1\">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>","mla":"Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:IST-2017-728-v2-1\">10.15479/AT:IST-2017-728-v2-1</a>.","chicago":"Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria, 2016. <a href=\"https://doi.org/10.15479/AT:IST-2017-728-v2-1\">https://doi.org/10.15479/AT:IST-2017-728-v2-1</a>.","ama":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria; 2016. doi:<a href=\"https://doi.org/10.15479/AT:IST-2017-728-v2-1\">10.15479/AT:IST-2017-728-v2-1</a>","short":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong Amplifiers of Natural Selection, IST Austria, 2016."},"department":[{"_id":"KrCh"}],"doi":"10.15479/AT:IST-2017-728-v2-1","_id":"5452","page":"32","has_accepted_license":"1","alternative_title":["IST Austria Technical Report"],"publication_status":"published","oa":1,"date_updated":"2024-02-21T13:48:42Z","ddc":["000"],"publication_identifier":{"issn":["2664-1690"]},"month":"12","oa_version":"Published Version","related_material":{"record":[{"relation":"later_version","id":"5453","status":"public"},{"status":"public","relation":"popular_science","id":"5559"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_created":"2018-12-12T11:52:59Z","creator":"system","checksum":"58e895f26c82f560c0f0989bf8b08599","relation":"main_file","file_id":"5460","file_name":"IST-2017-728-v2+1_main.pdf","file_size":811558,"access_level":"open_access","date_updated":"2020-07-14T12:46:59Z","content_type":"application/pdf"}],"publisher":"IST Austria","project":[{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","call_identifier":"FP7"}],"date_created":"2018-12-12T11:39:25Z","author":[{"orcid":"0000-0002-8943-0722","first_name":"Andreas","last_name":"Pavlogiannis","full_name":"Pavlogiannis, Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-1097-9684","first_name":"Josef","last_name":"Tkadlec","full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"date_published":"2016-12-30T00:00:00Z","file_date_updated":"2020-07-14T12:46:59Z","ec_funded":1,"day":"30","language":[{"iso":"eng"}],"year":"2016"},{"doi":"10.15479/AT:IST-2017-749-v3-1","date_created":"2018-12-12T11:39:25Z","_id":"5453","page":"34","department":[{"_id":"KrCh"}],"publisher":"IST Austria","file":[{"file_name":"IST-2017-749-v3+1_main.pdf","access_level":"open_access","file_size":1015647,"date_updated":"2020-07-14T12:46:59Z","content_type":"application/pdf","creator":"system","date_created":"2018-12-12T11:53:13Z","relation":"main_file","checksum":"83b0313dab3bff4bdb6ac38695026fda","file_id":"5474"}],"citation":{"chicago":"Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria, 2016. <a href=\"https://doi.org/10.15479/AT:IST-2017-749-v3-1\">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>.","short":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak, Arbitrarily Strong Amplifiers of Natural Selection, IST Austria, 2016.","ama":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria; 2016. doi:<a href=\"https://doi.org/10.15479/AT:IST-2017-749-v3-1\">10.15479/AT:IST-2017-749-v3-1</a>","apa":"Pavlogiannis, A., Tkadlec, J., Chatterjee, K., &#38; Nowak, M. (2016). <i>Arbitrarily strong amplifiers of natural selection</i>. IST Austria. <a href=\"https://doi.org/10.15479/AT:IST-2017-749-v3-1\">https://doi.org/10.15479/AT:IST-2017-749-v3-1</a>","mla":"Pavlogiannis, Andreas, et al. <i>Arbitrarily Strong Amplifiers of Natural Selection</i>. IST Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:IST-2017-749-v3-1\">10.15479/AT:IST-2017-749-v3-1</a>.","ista":"Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2016. Arbitrarily strong amplifiers of natural selection, IST Austria, 34p.","ieee":"A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak, <i>Arbitrarily strong amplifiers of natural selection</i>. IST Austria, 2016."},"title":"Arbitrarily strong amplifiers of natural selection","status":"public","type":"technical_report","pubrep_id":"755","month":"12","oa_version":"Published Version","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"5452"}]},"day":"30","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","language":[{"iso":"eng"}],"year":"2016","oa":1,"publication_status":"published","ddc":["000"],"date_updated":"2023-02-23T12:27:07Z","publication_identifier":{"issn":["2664-1690"]},"file_date_updated":"2020-07-14T12:46:59Z","has_accepted_license":"1","alternative_title":["IST Austria Technical Report"],"author":[{"orcid":"0000-0002-8943-0722","last_name":"Pavlogiannis","first_name":"Andreas","full_name":"Pavlogiannis, Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","first_name":"Josef","last_name":"Tkadlec","orcid":"0000-0002-1097-9684"},{"orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nowak, Martin","first_name":"Martin","last_name":"Nowak"}],"date_published":"2016-12-30T00:00:00Z"},{"year":"2016","publist_id":"5828","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"19","related_material":{"record":[{"id":"1382","relation":"research_paper","status":"public"}]},"oa_version":"Published Version","month":"02","datarep_id":"34","ddc":["576"],"date_updated":"2024-02-21T13:49:54Z","oa":1,"file_date_updated":"2020-07-14T12:47:00Z","has_accepted_license":"1","date_published":"2016-02-19T00:00:00Z","abstract":[{"lang":"eng","text":"We collected flower colour information on species in the tribe Antirrhineae from taxonomic literature. We also retreived molecular data from GenBank for as many of these species as possible to estimate phylogenetic relationships among these taxa. We then used the R package 'diversitree' to examine patterns of evolutionary transitions between anthocyanin and yellow pigmentation across the phylogeny.\r\n\r\nFor full details of the methods see:\r\nEllis TJ and Field DL \"Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae”, Annals of Botany (in press)"}],"author":[{"last_name":"Ellis","first_name":"Thomas","orcid":"0000-0002-8511-0254","full_name":"Ellis, Thomas","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Field","first_name":"David","orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87","full_name":"Field, David"}],"_id":"5550","license":"https://creativecommons.org/publicdomain/zero/1.0/","doi":"10.15479/AT:ISTA:34","date_created":"2018-12-12T12:31:29Z","department":[{"_id":"NiBa"}],"citation":{"ieee":"T. Ellis and D. Field, “Flower colour data and phylogeny (NEXUS) files.” Institute of Science and Technology Austria, 2016.","ista":"Ellis T, Field D. 2016. Flower colour data and phylogeny (NEXUS) files, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:34\">10.15479/AT:ISTA:34</a>.","ama":"Ellis T, Field D. Flower colour data and phylogeny (NEXUS) files. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:34\">10.15479/AT:ISTA:34</a>","short":"T. Ellis, D. Field, (2016).","chicago":"Ellis, Thomas, and David Field. “Flower Colour Data and Phylogeny (NEXUS) Files.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:34\">https://doi.org/10.15479/AT:ISTA:34</a>.","mla":"Ellis, Thomas, and David Field. <i>Flower Colour Data and Phylogeny (NEXUS) Files</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:34\">10.15479/AT:ISTA:34</a>.","apa":"Ellis, T., &#38; Field, D. (2016). Flower colour data and phylogeny (NEXUS) files. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:34\">https://doi.org/10.15479/AT:ISTA:34</a>"},"article_processing_charge":"No","publisher":"Institute of Science and Technology Austria","file":[{"file_name":"IST-2016-34-v1+1_tellis_flower_colour_data.zip","access_level":"open_access","file_size":4468543,"date_updated":"2020-07-14T12:47:00Z","content_type":"application/zip","creator":"system","date_created":"2018-12-12T13:02:27Z","checksum":"950f85b80427d357bfeff09608ba02e9","relation":"main_file","file_id":"5594"}],"type":"research_data","status":"public","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"},"title":"Flower colour data and phylogeny (NEXUS) files"},{"type":"research_data","status":"public","title":"Data on pollinator observations and offpsring phenotypes","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"},"publisher":"Institute of Science and Technology Austria","file":[{"date_updated":"2020-07-14T12:47:01Z","content_type":"application/zip","file_name":"IST-2016-35-v1+1_array_data.zip","file_size":32775,"access_level":"open_access","file_id":"5640","creator":"system","date_created":"2018-12-12T13:05:12Z","checksum":"aa3eb85d52b110cd192aa23147c4d4f3","relation":"main_file"}],"citation":{"ista":"Ellis T. 2016. Data on pollinator observations and offpsring phenotypes, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:35\">10.15479/AT:ISTA:35</a>.","ieee":"T. Ellis, “Data on pollinator observations and offpsring phenotypes.” Institute of Science and Technology Austria, 2016.","mla":"Ellis, Thomas. <i>Data on Pollinator Observations and Offpsring Phenotypes</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:35\">10.15479/AT:ISTA:35</a>.","apa":"Ellis, T. (2016). Data on pollinator observations and offpsring phenotypes. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:35\">https://doi.org/10.15479/AT:ISTA:35</a>","chicago":"Ellis, Thomas. “Data on Pollinator Observations and Offpsring Phenotypes.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:35\">https://doi.org/10.15479/AT:ISTA:35</a>.","ama":"Ellis T. Data on pollinator observations and offpsring phenotypes. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:35\">10.15479/AT:ISTA:35</a>","short":"T. Ellis, (2016)."},"article_processing_charge":"No","contributor":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David"},{"first_name":"Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"NiBa"}],"_id":"5551","doi":"10.15479/AT:ISTA:35","date_created":"2018-12-12T12:31:29Z","abstract":[{"text":"Data from array experiments investigating pollinator behaviour on snapdragons in controlled conditions, and their effect on plant mating. Data were collected as part of Tom Ellis' PhD thesis , submitted February 2016.\r\n\r\nWe placed a total of 36 plants in a grid inside a closed organza tent, with a single hive of commercially bred bumblebees (Bombus hortorum). We used only the yellow-flowered Antirrhinum majus striatum and the magenta-flowered Antirrhinum majus pseudomajus, at ratios of 6:36, 12:24, 18:18, 24:12 and 30:6.\r\n\r\nAfter 24 hours to learn how to deal with snapdragons, I observed pollinators foraging on plants, and recorded the transitions between plants. Thereafter seeds on plants were allowed to develops. A sample of these were grown to maturity when their flower colour could be determined, and they were scored as yellow, magenta, or hybrid.","lang":"eng"}],"date_published":"2016-02-19T00:00:00Z","author":[{"last_name":"Ellis","first_name":"Thomas","orcid":"0000-0002-8511-0254","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","full_name":"Ellis, Thomas"}],"file_date_updated":"2020-07-14T12:47:01Z","has_accepted_license":"1","date_updated":"2024-02-21T13:51:27Z","oa":1,"related_material":{"record":[{"status":"public","relation":"research_paper","id":"1398"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"19","year":"2016","oa_version":"Published Version","month":"02","datarep_id":"35"},{"file_date_updated":"2020-07-14T12:47:01Z","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Data on pollinator visitation to wild snapdragons in a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted February 2016).\r\n\r\nSnapdragon flowers have a mouth-like structure which pollinators must open to access nectar. We placed 5mm cellophane tags in these mouths, which are held in place by the pressure of the flower until a pollinator visits. When she opens the flower, the tag drops out, and one can infer a visit. We surveyed plants over multiple days in 2010, 2011 and 2012.\r\n\r\nAlso included are data on phenotypic and demographic variables which may be explanatory variables for pollinator visitation."}],"date_published":"2016-02-19T00:00:00Z","author":[{"full_name":"Ellis, Thomas","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Ellis","orcid":"0000-0002-8511-0254"}],"related_material":{"record":[{"status":"public","id":"1398","relation":"research_paper"}]},"day":"19","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","oa_version":"Published Version","month":"02","datarep_id":"36","date_updated":"2024-02-21T13:51:40Z","oa":1,"file":[{"content_type":"application/zip","date_updated":"2020-07-14T12:47:01Z","access_level":"open_access","file_size":44905,"file_name":"IST-2016-36-v1+1_tag_assay_archive.zip","file_id":"5625","checksum":"cbc61b523d4d475a04a737d50dc470ef","relation":"main_file","date_created":"2018-12-12T13:03:07Z","creator":"system"}],"publisher":"Institute of Science and Technology Austria","article_processing_charge":"No","citation":{"ista":"Ellis T. 2016. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data., Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:36\">10.15479/AT:ISTA:36</a>.","ieee":"T. Ellis, “Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.” Institute of Science and Technology Austria, 2016.","apa":"Ellis, T. (2016). Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:36\">https://doi.org/10.15479/AT:ISTA:36</a>","mla":"Ellis, Thomas. <i>Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data.</i> Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:36\">10.15479/AT:ISTA:36</a>.","short":"T. Ellis, (2016).","chicago":"Ellis, Thomas. “Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:36\">https://doi.org/10.15479/AT:ISTA:36</a>.","ama":"Ellis T. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:36\">10.15479/AT:ISTA:36</a>"},"status":"public","type":"research_data","title":"Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.","_id":"5552","date_created":"2018-12-12T12:31:30Z","doi":"10.15479/AT:ISTA:36","department":[{"_id":"NiBa"}],"contributor":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","last_name":"Barton","first_name":"Nicholas H"}]},{"day":"19","related_material":{"record":[{"status":"public","id":"1398","relation":"research_paper"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","oa_version":"Published Version","month":"02","datarep_id":"37","ddc":["576"],"keyword":["paternity assignment","pedigree","matting patterns","assortative mating","Antirrhinum majus","frequency-dependent selection","plant-pollinator interaction"],"date_updated":"2024-02-21T13:51:14Z","oa":1,"file_date_updated":"2020-07-14T12:47:01Z","has_accepted_license":"1","abstract":[{"lang":"eng","text":"Genotypic, phenotypic and demographic data for 2128 wild snapdragons and 1127 open-pollinated progeny from a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted) February 2016).\r\n\r\nTissue samples were sent to LGC Genomics in Berlin for DNA extraction, and genotyping at 70 SNP markers by KASPR genotyping. 29 of these SNPs failed to amplify reliably, and have been removed from this dataset.\r\n\r\nOther data were retreived from an online database of this population at www.antspec.org."}],"date_published":"2016-02-19T00:00:00Z","author":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","full_name":"Field, David","orcid":"0000-0002-4014-8478","first_name":"David","last_name":"Field"},{"first_name":"Thomas","last_name":"Ellis","orcid":"0000-0002-8511-0254","full_name":"Ellis, Thomas","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87"}],"_id":"5553","date_created":"2018-12-12T12:31:30Z","doi":"10.15479/AT:ISTA:37","contributor":[{"first_name":"Nicholas H","last_name":"Barton","orcid":"0000-0002-8548-5240","contributor_type":"project_manager","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"NiBa"}],"file":[{"file_size":132808,"access_level":"open_access","file_name":"IST-2016-37-v1+1_paternity_archive.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:01Z","relation":"main_file","checksum":"4ae751b1fa4897fa216241f975a57313","creator":"system","date_created":"2018-12-12T13:03:02Z","file_id":"5620"}],"publisher":"Institute of Science and Technology Austria","citation":{"ieee":"D. Field and T. Ellis, “Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012.” Institute of Science and Technology Austria, 2016.","ista":"Field D, Ellis T. 2016. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>.","mla":"Field, David, and Thomas Ellis. <i>Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>.","apa":"Field, D., &#38; Ellis, T. (2016). Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:37\">https://doi.org/10.15479/AT:ISTA:37</a>","chicago":"Field, David, and Thomas Ellis. “Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:37\">https://doi.org/10.15479/AT:ISTA:37</a>.","ama":"Field D, Ellis T. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:37\">10.15479/AT:ISTA:37</a>","short":"D. Field, T. Ellis, (2016)."},"article_processing_charge":"No","status":"public","type":"research_data","title":"Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"}},{"date_updated":"2024-02-21T13:50:34Z","keyword":["RNAP binding","de novo promoter evolution","lac promoter"],"oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","day":"12","related_material":{"record":[{"id":"1131","relation":"used_in_publication","status":"public"}]},"year":"2016","datarep_id":"43","oa_version":"Published Version","month":"05","abstract":[{"text":"The data stored here is used in Murat Tugrul's PhD thesis (Chapter 3), which is related to the evolution of bacterial RNA polymerase binding.\r\nMagdalena Steinrueck (PhD Student in Calin Guet's group at IST Austria) performed the experiments and created the data on de novo promoter evolution. Fabienne Jesse (PhD Student in Jon Bollback's group at IST Austria) performed the experiments and created the data on lac promoter evolution.","lang":"eng"}],"date_published":"2016-05-12T00:00:00Z","author":[{"full_name":"Tugrul, Murat","id":"37C323C6-F248-11E8-B48F-1D18A9856A87","first_name":"Murat","last_name":"Tugrul","orcid":"0000-0002-8523-0758"}],"file_date_updated":"2020-07-14T12:47:01Z","has_accepted_license":"1","contributor":[{"id":"2C023F40-F248-11E8-B48F-1D18A9856A87","contributor_type":"researcher","first_name":"Magdalena","last_name":"Steinrück"},{"id":"4C8C26A4-F248-11E8-B48F-1D18A9856A87","first_name":"Fabienne","last_name":"Jesse","contributor_type":"researcher"}],"department":[{"_id":"NiBa"},{"_id":"JoBo"}],"_id":"5554","date_created":"2018-12-12T12:31:30Z","doi":"10.15479/AT:ISTA:43","status":"public","type":"research_data","title":"Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"},"publisher":"Institute of Science and Technology Austria","file":[{"relation":"main_file","checksum":"1fc0a10bb7ce110fcb5e1fbe3cf0c4e2","date_created":"2018-12-12T13:03:08Z","creator":"system","file_id":"5626","access_level":"open_access","file_size":1123495,"file_name":"IST-2016-43-v1+1_DATA_MTugrul_PhDThesis_Chapter3.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:01Z"}],"article_processing_charge":"No","citation":{"ista":"Tugrul M. 2016. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>.","ieee":"M. Tugrul, “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016.","apa":"Tugrul, M. (2016). Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:43\">https://doi.org/10.15479/AT:ISTA:43</a>","mla":"Tugrul, Murat. <i>Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>.","ama":"Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:43\">10.15479/AT:ISTA:43</a>","short":"M. Tugrul, (2016).","chicago":"Tugrul, Murat. “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:43\">https://doi.org/10.15479/AT:ISTA:43</a>."}},{"department":[{"_id":"Bio"}],"_id":"5555","doi":"10.15479/AT:ISTA:44","date_created":"2018-12-12T12:31:31Z","type":"research_data","status":"public","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"},"title":"Fiji script to determine average speed and direction of migration of cells","publisher":"Institute of Science and Technology Austria","file":[{"file_size":20692,"access_level":"open_access","file_name":"IST-2016-44-v1+1_migrationAnalyzer.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:02Z","relation":"main_file","checksum":"9f96cddbcd4ed689f48712ffe234d5e5","date_created":"2018-12-12T13:03:03Z","creator":"system","file_id":"5621"}],"article_processing_charge":"No","citation":{"ista":"Hauschild R. 2016. Fiji script to determine average speed and direction of migration of cells, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>.","ieee":"R. Hauschild, “Fiji script to determine average speed and direction of migration of cells.” Institute of Science and Technology Austria, 2016.","short":"R. Hauschild, (2016).","chicago":"Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction of Migration of Cells.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:44\">https://doi.org/10.15479/AT:ISTA:44</a>.","ama":"Hauschild R. Fiji script to determine average speed and direction of migration of cells. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>","mla":"Hauschild, Robert. <i>Fiji Script to Determine Average Speed and Direction of Migration of Cells</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:44\">10.15479/AT:ISTA:44</a>.","apa":"Hauschild, R. (2016). Fiji script to determine average speed and direction of migration of cells. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:44\">https://doi.org/10.15479/AT:ISTA:44</a>"},"ddc":["570"],"date_updated":"2024-02-21T13:50:06Z","keyword":["cell migration","wide field microscopy","FIJI"],"oa":1,"day":"08","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2016","month":"07","datarep_id":"44","oa_version":"Published Version","abstract":[{"text":"This FIJI script calculates the population average of the migration speed as a function of time of all cells from wide field microscopy movies.","lang":"eng"}],"date_published":"2016-07-08T00:00:00Z","author":[{"full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9843-3522","first_name":"Robert","last_name":"Hauschild"}],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:02Z"},{"file_date_updated":"2020-07-14T12:47:02Z","has_accepted_license":"1","author":[{"id":"298FFE8C-F248-11E8-B48F-1D18A9856A87","full_name":"Lukacisin, Martin","orcid":"0000-0001-6549-4177","last_name":"Lukacisin","first_name":"Martin"},{"full_name":"Landon, Matthieu","last_name":"Landon","first_name":"Matthieu"},{"last_name":"Jajoo","first_name":"Rishi","full_name":"Jajoo, Rishi"}],"date_published":"2016-08-25T00:00:00Z","abstract":[{"text":"MATLAB code and processed datasets available for reproducing the results in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.\r\n*equal contributions","lang":"eng"}],"datarep_id":"45","oa_version":"Published Version","month":"08","year":"2016","day":"25","related_material":{"record":[{"id":"8431","relation":"used_in_publication","status":"deleted"},{"relation":"research_paper","id":"1029","status":"public"}]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"date_updated":"2024-02-21T13:51:53Z","ddc":["571"],"keyword":["transcription","pausing","backtracking","polymerase","RNA","NET-seq","nucleosome","basepairing"],"citation":{"ieee":"M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016.","ista":"Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast’, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>.","short":"M. Lukacisin, M. Landon, R. Jajoo, (2016).","ama":"Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>","chicago":"Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:45\">https://doi.org/10.15479/AT:ISTA:45</a>.","apa":"Lukacisin, M., Landon, M., &#38; Jajoo, R. (2016). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:45\">https://doi.org/10.15479/AT:ISTA:45</a>","mla":"Lukacisin, Martin, et al. <i>MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.”</i> Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:45\">10.15479/AT:ISTA:45</a>."},"article_processing_charge":"No","file":[{"content_type":"application/zip","date_updated":"2020-07-14T12:47:02Z","file_size":296722548,"access_level":"open_access","file_name":"IST-2016-45-v1+1_PaperCode.zip","file_id":"5616","checksum":"ee697f2b1ade4dc14d6ac0334dd832ab","relation":"main_file","date_created":"2018-12-12T13:02:58Z","creator":"system"}],"publisher":"Institute of Science and Technology Austria","title":"MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast'","tmp":{"name":"Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0)","image":"/images/cc_by_sa.png","short":"CC BY-SA (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-sa/4.0/legalcode"},"type":"research_data","status":"public","date_created":"2018-12-12T12:31:31Z","doi":"10.15479/AT:ISTA:45","license":"https://creativecommons.org/licenses/by-sa/4.0/","_id":"5556","department":[{"_id":"ToBo"}]},{"citation":{"ama":"Swoboda P. Synthetic discrete tomography problems. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>","short":"P. Swoboda, (2016).","chicago":"Swoboda, Paul. “Synthetic Discrete Tomography Problems.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:46\">https://doi.org/10.15479/AT:ISTA:46</a>.","apa":"Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:46\">https://doi.org/10.15479/AT:ISTA:46</a>","mla":"Swoboda, Paul. <i>Synthetic Discrete Tomography Problems</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>.","ieee":"P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science and Technology Austria, 2016.","ista":"Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:46\">10.15479/AT:ISTA:46</a>."},"article_processing_charge":"No","publisher":"Institute of Science and Technology Austria","file":[{"checksum":"aa5a16a0dc888da7186fb8fc45e88439","relation":"main_file","creator":"system","date_created":"2018-12-12T13:05:19Z","file_id":"5645","file_size":36058401,"access_level":"open_access","file_name":"IST-2016-46-v1+1_discrete_tomography_synthetic.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:02Z"}],"type":"research_data","status":"public","tmp":{"name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","image":"/images/cc_0.png"},"title":"Synthetic discrete tomography problems","_id":"5557","date_created":"2018-12-12T12:31:31Z","doi":"10.15479/AT:ISTA:46","contributor":[{"last_name":"Kuske","first_name":"Jan","contributor_type":"data_collector"}],"department":[{"_id":"VlKo"}],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:02Z","date_published":"2016-09-20T00:00:00Z","abstract":[{"lang":"eng","text":"Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and 256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5."}],"author":[{"last_name":"Swoboda","first_name":"Paul","id":"446560C6-F248-11E8-B48F-1D18A9856A87","full_name":"Swoboda, Paul"}],"year":"2016","day":"20","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","datarep_id":"46","month":"09","keyword":["discrete tomography"],"date_updated":"2024-02-21T13:50:21Z","ddc":["006"],"oa":1},{"date_published":"2016-09-23T00:00:00Z","abstract":[{"text":"PhD thesis LaTeX source code","lang":"eng"}],"author":[{"orcid":"0000-0002-4417-3224","first_name":"Morten","last_name":"Bojsen-Hansen","id":"439F0C8C-F248-11E8-B48F-1D18A9856A87","full_name":"Bojsen-Hansen, Morten"}],"has_accepted_license":"1","file_date_updated":"2020-07-14T12:47:02Z","ddc":["004"],"date_updated":"2024-02-21T13:50:48Z","oa":1,"year":"2016","day":"23","related_material":{"record":[{"relation":"other","id":"1122","status":"public"}]},"publist_id":"6238","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","month":"09","datarep_id":"48","pubrep_id":"640","type":"research_data","status":"public","title":"Tracking, Correcting and Absorbing Water Surface Waves","tmp":{"short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"citation":{"chicago":"Bojsen-Hansen, Morten. “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016. <a href=\"https://doi.org/10.15479/AT:ISTA:48\">https://doi.org/10.15479/AT:ISTA:48</a>.","ama":"Bojsen-Hansen M. Tracking, Correcting and Absorbing Water Surface Waves. 2016. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>","short":"M. Bojsen-Hansen, (2016).","apa":"Bojsen-Hansen, M. (2016). Tracking, Correcting and Absorbing Water Surface Waves. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:48\">https://doi.org/10.15479/AT:ISTA:48</a>","mla":"Bojsen-Hansen, Morten. <i>Tracking, Correcting and Absorbing Water Surface Waves</i>. Institute of Science and Technology Austria, 2016, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>.","ieee":"M. Bojsen-Hansen, “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016.","ista":"Bojsen-Hansen M. 2016. Tracking, Correcting and Absorbing Water Surface Waves, Institute of Science and Technology Austria, <a href=\"https://doi.org/10.15479/AT:ISTA:48\">10.15479/AT:ISTA:48</a>."},"article_processing_charge":"No","file":[{"checksum":"5b1b256ad796fbddb4b7729f5e45e444","relation":"main_file","creator":"system","date_created":"2018-12-12T13:02:18Z","file_id":"5589","file_size":55237885,"access_level":"open_access","file_name":"IST-2016-48-v1+1_2016_Bojsen-Hansen_TCaAWSW.tar.bz2","content_type":"application/x-bzip2","date_updated":"2020-07-14T12:47:02Z"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"ChWo"}],"_id":"5558","date_created":"2018-12-12T12:31:31Z","doi":"10.15479/AT:ISTA:48"},{"has_accepted_license":"1","ddc":["576"],"date_updated":"2023-09-05T13:46:05Z","publication_identifier":{"issn":["0737-4038"],"eissn":["1537-1719"]},"oa":1,"publication_status":"published","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"record":[{"status":"public","id":"9719","relation":"research_data"}]},"month":"03","oa_version":"Published Version","type":"journal_article","status":"public","pubrep_id":"587","title":"Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria","tmp":{"image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)"},"article_processing_charge":"No","citation":{"ieee":"S. Wielgoss, T. Bergmiller, A. M. Bischofberger, and A. R. Hall, “Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria,” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3. Oxford University Press, pp. 770–782, 2016.","ista":"Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2016. Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. Molecular Biology and Evolution. 33(3), 770–782.","mla":"Wielgoss, Sébastien, et al. “Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.” <i>Molecular Biology and Evolution</i>, vol. 33, no. 3, Oxford University Press, 2016, pp. 770–82, doi:<a href=\"https://doi.org/10.1093/molbev/msv270\">10.1093/molbev/msv270</a>.","apa":"Wielgoss, S., Bergmiller, T., Bischofberger, A. M., &#38; Hall, A. R. (2016). Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. <i>Molecular Biology and Evolution</i>. Oxford University Press. <a href=\"https://doi.org/10.1093/molbev/msv270\">https://doi.org/10.1093/molbev/msv270</a>","ama":"Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria. <i>Molecular Biology and Evolution</i>. 2016;33(3):770-782. doi:<a href=\"https://doi.org/10.1093/molbev/msv270\">10.1093/molbev/msv270</a>","short":"S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2016) 770–782.","chicago":"Wielgoss, Sébastien, Tobias Bergmiller, Anna M. Bischofberger, and Alex R. Hall. “Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria.” <i>Molecular Biology and Evolution</i>. Oxford University Press, 2016. <a href=\"https://doi.org/10.1093/molbev/msv270\">https://doi.org/10.1093/molbev/msv270</a>."},"department":[{"_id":"CaGu"}],"acknowledgement":"The authors thank three anonymous reviewers and the editor for helpful comments on the manuscript, as well as Dominique Schneider for feedback on an earlier draft, Jenna Gallie for lytic λ and Julien Capelle for T5 and T6. This work was supported by the Swiss National Science Foundation (PZ00P3_148255 to A.H.) and an EU Marie Curie PEOPLE Postdoctoral Fellowship for Career Development (FP7-PEOPLE-2012-IEF-331824 to S.W.).","quality_controlled":"1","_id":"5749","license":"https://creativecommons.org/licenses/by-nc/4.0/","page":"770-782","intvolume":"        33","doi":"10.1093/molbev/msv270","external_id":{"pmid":["26609077"]},"abstract":[{"lang":"eng","text":"Parasitism creates selection for resistance mechanisms in host populations and is hypothesized to promote increased host evolvability. However, the influence of these traits on host evolution when parasites are no longer present is unclear. We used experimental evolution and whole-genome sequencing of Escherichia coli to determine the effects of past and present exposure to parasitic viruses (phages) on the spread of mutator alleles, resistance, and bacterial competitive fitness. We found that mutator alleles spread rapidly during adaptation to any of four different phage species, and this pattern was even more pronounced with multiple phages present simultaneously. However, hypermutability did not detectably accelerate adaptation in the absence of phages and recovery of fitness costs associated with resistance. Several lineages evolved phage resistance through elevated mucoidy, and during subsequent evolution in phage-free conditions they rapidly reverted to nonmucoid, phage-susceptible phenotypes. Genome sequencing revealed that this phenotypic reversion was achieved by additional genetic changes rather than by genotypic reversion of the initial resistance mutations. Insertion sequence (IS) elements played a key role in both the acquisition of resistance and adaptation in the absence of parasites; unlike single nucleotide polymorphisms, IS insertions were not more frequent in mutator lineages. Our results provide a genetic explanation for rapid reversion of mucoidy, a phenotype observed in other bacterial species including human pathogens. Moreover, this demonstrates that the types of genetic change underlying adaptation to fitness costs, and consequently the impact of evolvability mechanisms such as increased point-mutation rates, depend critically on the mechanism of resistance."}],"volume":33,"date_published":"2016-03-01T00:00:00Z","author":[{"full_name":"Wielgoss, Sébastien","first_name":"Sébastien","last_name":"Wielgoss"},{"full_name":"Bergmiller, Tobias","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","last_name":"Bergmiller","orcid":"0000-0001-5396-4346"},{"full_name":"Bischofberger, Anna M.","first_name":"Anna M.","last_name":"Bischofberger"},{"first_name":"Alex R.","last_name":"Hall","full_name":"Hall, Alex R."}],"issue":"3","file_date_updated":"2020-07-14T12:47:10Z","day":"01","year":"2016","language":[{"iso":"eng"}],"publication":"Molecular Biology and Evolution","scopus_import":"1","file":[{"file_id":"5750","creator":"dernst","date_created":"2018-12-18T13:21:45Z","checksum":"47d9010690b6c5c17f2ac830cc63ac5c","relation":"main_file","date_updated":"2020-07-14T12:47:10Z","content_type":"application/pdf","file_name":"2016_MolBiolEvol_Wielgoss.pdf","access_level":"open_access","file_size":634037}],"publisher":"Oxford University Press","pmid":1,"date_created":"2018-12-18T13:18:10Z"},{"date_published":"2016-06-02T00:00:00Z","volume":9667,"abstract":[{"lang":"eng","text":"Discretization of sphere in the integer space follows a particular discretization scheme, which, in principle, conforms to some topological model. This eventually gives rise to interesting topological properties of a discrete spherical surface, which need to be investigated for its analytical characterization. This paper presents some novel results on the local topological properties of the naive model of discrete sphere. They follow from the bijection of each quadraginta octant of naive sphere with its projection map called f -map on the corresponding functional plane and from the characterization of certain jumps in the f-map. As an application, we have shown how these properties can be used in designing an efficient reconstruction algorithm for a naive spherical surface from an input voxel set when it is sparse or noisy."}],"author":[{"first_name":"Nabhasmita","last_name":"Sen","full_name":"Sen, Nabhasmita"},{"full_name":"Biswas, Ranita","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5372-7890","first_name":"Ranita","last_name":"Biswas"},{"full_name":"Bhowmick, Partha","last_name":"Bhowmick","first_name":"Partha"}],"year":"2016","language":[{"iso":"eng"}],"day":"02","publication":"Computational Topology in Image Context","publisher":"Springer Nature","date_created":"2019-01-08T20:44:24Z","alternative_title":["LNCS"],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","oa_version":"None","month":"06","publication_identifier":{"eissn":["1611-3349"],"isbn":["978-3-319-39440-4"],"issn":["0302-9743"],"eisbn":["978-3-319-39441-1"]},"date_updated":"2022-01-28T08:01:22Z","conference":{"location":"Marseille, France","start_date":"2016-06-15","name":"CTIC: Computational Topology in Image Context","end_date":"2016-06-17"},"publication_status":"published","extern":"1","citation":{"ieee":"N. Sen, R. Biswas, and P. Bhowmick, “On some local topological properties of naive discrete sphere,” in <i>Computational Topology in Image Context</i>, vol. 9667, Cham: Springer Nature, 2016, pp. 253–264.","ista":"Sen N, Biswas R, Bhowmick P. 2016.On some local topological properties of naive discrete sphere. In: Computational Topology in Image Context. LNCS, vol. 9667, 253–264.","chicago":"Sen, Nabhasmita, Ranita Biswas, and Partha Bhowmick. “On Some Local Topological Properties of Naive Discrete Sphere.” In <i>Computational Topology in Image Context</i>, 9667:253–64. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">https://doi.org/10.1007/978-3-319-39441-1_23</a>.","ama":"Sen N, Biswas R, Bhowmick P. On some local topological properties of naive discrete sphere. In: <i>Computational Topology in Image Context</i>. Vol 9667. Cham: Springer Nature; 2016:253-264. doi:<a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">10.1007/978-3-319-39441-1_23</a>","short":"N. Sen, R. Biswas, P. Bhowmick, in:, Computational Topology in Image Context, Springer Nature, Cham, 2016, pp. 253–264.","mla":"Sen, Nabhasmita, et al. “On Some Local Topological Properties of Naive Discrete Sphere.” <i>Computational Topology in Image Context</i>, vol. 9667, Springer Nature, 2016, pp. 253–64, doi:<a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">10.1007/978-3-319-39441-1_23</a>.","apa":"Sen, N., Biswas, R., &#38; Bhowmick, P. (2016). On some local topological properties of naive discrete sphere. In <i>Computational Topology in Image Context</i> (Vol. 9667, pp. 253–264). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-39441-1_23\">https://doi.org/10.1007/978-3-319-39441-1_23</a>"},"article_processing_charge":"No","status":"public","type":"book_chapter","title":"On some local topological properties of naive discrete sphere","intvolume":"      9667","page":"253-264","_id":"5805","doi":"10.1007/978-3-319-39441-1_23","place":"Cham","department":[{"_id":"HeEd"}],"quality_controlled":"1"},{"publisher":"Springer Nature","date_created":"2019-01-08T20:44:37Z","author":[{"first_name":"Ranita","last_name":"Biswas","orcid":"0000-0002-5372-7890","id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","full_name":"Biswas, Ranita"},{"full_name":"Bhowmick, Partha","last_name":"Bhowmick","first_name":"Partha"}],"date_published":"2016-04-09T00:00:00Z","abstract":[{"text":"Although the concept of functional plane for naive plane is studied and reported in the literature in great detail, no similar study is yet found for naive sphere. This article exposes the first study in this line, opening up further prospects of analyzing the topological properties of sphere in the discrete space. We show that each quadraginta octant Q of a naive sphere forms a bijection with its projected pixel set on a unique coordinate plane, which thereby serves as the functional plane of Q, and hence gives rise to merely mono-jumps during back projection. The other two coordinate planes serve as para-functional and dia-functional planes for Q, as the former is ‘mono-jumping’ but not bijective, whereas the latter holds neither of the two. Owing to this, the quadraginta octants form symmetry groups and subgroups with equivalent jump conditions. We also show a potential application in generating a special class of discrete 3D circles based on back projection and jump bridging by Steiner voxels. A circle in this class possesses 4-symmetry, uniqueness, and bounded distance from the underlying real sphere and real plane.","lang":"eng"}],"volume":9647,"publication":"Discrete Geometry for Computer Imagery","year":"2016","language":[{"iso":"eng"}],"day":"09","title":"On functionality of quadraginta octants of naive sphere with application to circle drawing","type":"conference","status":"public","citation":{"ista":"Biswas R, Bhowmick P. 2016. On functionality of quadraginta octants of naive sphere with application to circle drawing. Discrete Geometry for Computer Imagery. DGCI: International Conference on Discrete Geometry for Computer Imagery, LNCS, vol. 9647, 256–267.","ieee":"R. Biswas and P. Bhowmick, “On functionality of quadraginta octants of naive sphere with application to circle drawing,” in <i>Discrete Geometry for Computer Imagery</i>, Nantes, France, 2016, vol. 9647, pp. 256–267.","mla":"Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta Octants of Naive Sphere with Application to Circle Drawing.” <i>Discrete Geometry for Computer Imagery</i>, vol. 9647, Springer Nature, 2016, pp. 256–67, doi:<a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">10.1007/978-3-319-32360-2_20</a>.","apa":"Biswas, R., &#38; Bhowmick, P. (2016). On functionality of quadraginta octants of naive sphere with application to circle drawing. In <i>Discrete Geometry for Computer Imagery</i> (Vol. 9647, pp. 256–267). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">https://doi.org/10.1007/978-3-319-32360-2_20</a>","ama":"Biswas R, Bhowmick P. On functionality of quadraginta octants of naive sphere with application to circle drawing. In: <i>Discrete Geometry for Computer Imagery</i>. Vol 9647. Cham: Springer Nature; 2016:256-267. doi:<a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">10.1007/978-3-319-32360-2_20</a>","chicago":"Biswas, Ranita, and Partha Bhowmick. “On Functionality of Quadraginta Octants of Naive Sphere with Application to Circle Drawing.” In <i>Discrete Geometry for Computer Imagery</i>, 9647:256–67. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-32360-2_20\">https://doi.org/10.1007/978-3-319-32360-2_20</a>.","short":"R. Biswas, P. Bhowmick, in:, Discrete Geometry for Computer Imagery, Springer Nature, Cham, 2016, pp. 256–267."},"article_processing_charge":"No","extern":"1","quality_controlled":"1","place":"Cham","department":[{"_id":"HeEd"}],"doi":"10.1007/978-3-319-32360-2_20","intvolume":"      9647","page":"256-267","_id":"5806","alternative_title":["LNCS"],"conference":{"location":"Nantes, France","name":"DGCI: International Conference on Discrete Geometry for Computer Imagery","end_date":"2016-04-20","start_date":"2016-04-18"},"publication_status":"published","publication_identifier":{"eisbn":["978-3-319-32360-2"],"issn":["0302-9743","1611-3349"],"isbn":["978-3-319-32359-6"]},"date_updated":"2022-01-28T08:10:11Z","month":"04","oa_version":"None","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"place":"Cham","department":[{"_id":"HeEd"}],"quality_controlled":"1","intvolume":"      9448","page":"86-100","_id":"5809","date_created":"2019-01-08T20:45:19Z","doi":"10.1007/978-3-319-26145-4_7","status":"public","type":"book_chapter","title":"On the connectivity and smoothness of discrete spherical circles","article_processing_charge":"No","citation":{"ista":"Biswas R, Bhowmick P, Brimkov VE. 2016.On the connectivity and smoothness of discrete spherical circles. In: Combinatorial image analysis. vol. 9448, 86–100.","ieee":"R. Biswas, P. Bhowmick, and V. E. Brimkov, “On the connectivity and smoothness of discrete spherical circles,” in <i>Combinatorial image analysis</i>, vol. 9448, Cham: Springer Nature, 2016, pp. 86–100.","mla":"Biswas, Ranita, et al. “On the Connectivity and Smoothness of Discrete Spherical Circles.” <i>Combinatorial Image Analysis</i>, vol. 9448, Springer Nature, 2016, pp. 86–100, doi:<a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">10.1007/978-3-319-26145-4_7</a>.","apa":"Biswas, R., Bhowmick, P., &#38; Brimkov, V. E. (2016). On the connectivity and smoothness of discrete spherical circles. In <i>Combinatorial image analysis</i> (Vol. 9448, pp. 86–100). Cham: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">https://doi.org/10.1007/978-3-319-26145-4_7</a>","chicago":"Biswas, Ranita, Partha Bhowmick, and Valentin E. Brimkov. “On the Connectivity and Smoothness of Discrete Spherical Circles.” In <i>Combinatorial Image Analysis</i>, 9448:86–100. Cham: Springer Nature, 2016. <a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">https://doi.org/10.1007/978-3-319-26145-4_7</a>.","ama":"Biswas R, Bhowmick P, Brimkov VE. On the connectivity and smoothness of discrete spherical circles. In: <i>Combinatorial Image Analysis</i>. Vol 9448. Cham: Springer Nature; 2016:86-100. doi:<a href=\"https://doi.org/10.1007/978-3-319-26145-4_7\">10.1007/978-3-319-26145-4_7</a>","short":"R. Biswas, P. Bhowmick, V.E. Brimkov, in:, Combinatorial Image Analysis, Springer Nature, Cham, 2016, pp. 86–100."},"extern":"1","publisher":"Springer Nature","publication_identifier":{"eissn":["1611-3349"],"isbn":["978-3-319-26144-7"],"issn":["0302-9743"],"eisbn":["978-3-319-26145-4"]},"date_updated":"2022-01-28T08:13:03Z","conference":{"name":"IWCIA: International Workshop on Combinatorial Image Analysis","end_date":"2015-11-27","start_date":"2015-11-24","location":"Kolkata, India"},"publication_status":"published","year":"2016","language":[{"iso":"eng"}],"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","day":"06","publication":"Combinatorial image analysis","month":"01","oa_version":"None","date_published":"2016-01-06T00:00:00Z","volume":9448,"abstract":[{"text":"A discrete spherical circle is a topologically well-connected 3D circle in the integer space, which belongs to a discrete sphere as well as a discrete plane. It is one of the most important 3D geometric primitives, but has not possibly yet been studied up to its merit. This paper is a maiden exposition of some of its elementary properties, which indicates a sense of its profound theoretical prospects in the framework of digital geometry. We have shown how different types of discretization can lead to forbidden and admissible classes, when one attempts to define the discretization of a spherical circle in terms of intersection between a discrete sphere and a discrete plane. Several fundamental theoretical results have been presented, the algorithm for construction of discrete spherical circles has been discussed, and some test results have been furnished to demonstrate its practicality and usefulness.","lang":"eng"}],"author":[{"id":"3C2B033E-F248-11E8-B48F-1D18A9856A87","full_name":"Biswas, Ranita","first_name":"Ranita","last_name":"Biswas","orcid":"0000-0002-5372-7890"},{"last_name":"Bhowmick","first_name":"Partha","full_name":"Bhowmick, Partha"},{"full_name":"Brimkov, Valentin E.","first_name":"Valentin E.","last_name":"Brimkov"}]}]