[{"publisher":"Springer","language":[{"iso":"eng"}],"intvolume":"        54","page":"915 - 965","issue":"4","publist_id":"6309","abstract":[{"lang":"eng","text":"Let X and Y be finite simplicial sets (e.g. finite simplicial complexes), both equipped with a free simplicial action of a finite group G. Assuming that Y is d-connected and dimX≤2d, for some d≥1, we provide an algorithm that computes the set of all equivariant homotopy classes of equivariant continuous maps |X|→|Y|; the existence of such a map can be decided even for dimX≤2d+1. This yields the first algorithm for deciding topological embeddability of a k-dimensional finite simplicial complex into Rn under the condition k≤23n−1. More generally, we present an algorithm that, given a lifting-extension problem satisfying an appropriate stability assumption, computes the set of all homotopy classes of solutions. This result is new even in the non-equivariant situation."}],"doi":"10.1007/s00454-016-9855-6","status":"public","publication_identifier":{"issn":["01795376"]},"publication_status":"published","day":"01","isi":1,"month":"06","title":"Algorithmic solvability of the lifting extension problem","date_published":"2017-06-01T00:00:00Z","quality_controlled":"1","year":"2017","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1307.6444"}],"publication":"Discrete & Computational Geometry","volume":54,"article_processing_charge":"No","date_created":"2018-12-11T11:50:00Z","external_id":{"isi":["000400072700008"]},"scopus_import":"1","_id":"1073","oa_version":"Submitted Version","date_updated":"2023-09-20T12:01:28Z","department":[{"_id":"UlWa"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"M. Čadek, M. Krcál, and L. Vokřínek, “Algorithmic solvability of the lifting extension problem,” <i>Discrete &#38; Computational Geometry</i>, vol. 54, no. 4. Springer, pp. 915–965, 2017.","chicago":"Čadek, Martin, Marek Krcál, and Lukáš Vokřínek. “Algorithmic Solvability of the Lifting Extension Problem.” <i>Discrete &#38; Computational Geometry</i>. Springer, 2017. <a href=\"https://doi.org/10.1007/s00454-016-9855-6\">https://doi.org/10.1007/s00454-016-9855-6</a>.","short":"M. Čadek, M. Krcál, L. Vokřínek, Discrete &#38; Computational Geometry 54 (2017) 915–965.","ama":"Čadek M, Krcál M, Vokřínek L. Algorithmic solvability of the lifting extension problem. <i>Discrete &#38; Computational Geometry</i>. 2017;54(4):915-965. doi:<a href=\"https://doi.org/10.1007/s00454-016-9855-6\">10.1007/s00454-016-9855-6</a>","apa":"Čadek, M., Krcál, M., &#38; Vokřínek, L. (2017). Algorithmic solvability of the lifting extension problem. <i>Discrete &#38; Computational Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s00454-016-9855-6\">https://doi.org/10.1007/s00454-016-9855-6</a>","mla":"Čadek, Martin, et al. “Algorithmic Solvability of the Lifting Extension Problem.” <i>Discrete &#38; Computational Geometry</i>, vol. 54, no. 4, Springer, 2017, pp. 915–65, doi:<a href=\"https://doi.org/10.1007/s00454-016-9855-6\">10.1007/s00454-016-9855-6</a>.","ista":"Čadek M, Krcál M, Vokřínek L. 2017. Algorithmic solvability of the lifting extension problem. Discrete &#38; Computational Geometry. 54(4), 915–965."},"oa":1,"author":[{"full_name":"Čadek, Martin","first_name":"Martin","last_name":"Čadek"},{"first_name":"Marek","full_name":"Krcál, Marek","id":"33E21118-F248-11E8-B48F-1D18A9856A87","last_name":"Krcál"},{"full_name":"Vokřínek, Lukáš","first_name":"Lukáš","last_name":"Vokřínek"}],"type":"journal_article"},{"oa":1,"author":[{"last_name":"Ringbauer","orcid":"0000-0002-4884-9682","full_name":"Ringbauer, Harald","first_name":"Harald","id":"417FCFF4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Coop, Graham","first_name":"Graham","last_name":"Coop"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","full_name":"Barton, Nicholas H","first_name":"Nicholas H","orcid":"0000-0002-8548-5240","last_name":"Barton"}],"citation":{"ieee":"H. Ringbauer, G. Coop, and N. H. Barton, “Inferring recent demography from isolation by distance of long shared sequence blocks,” <i>Genetics</i>, vol. 205, no. 3. Genetics Society of America, pp. 1335–1351, 2017.","chicago":"Ringbauer, Harald, Graham Coop, and Nicholas H Barton. “Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks.” <i>Genetics</i>. Genetics Society of America, 2017. <a href=\"https://doi.org/10.1534/genetics.116.196220\">https://doi.org/10.1534/genetics.116.196220</a>.","short":"H. Ringbauer, G. Coop, N.H. Barton, Genetics 205 (2017) 1335–1351.","ama":"Ringbauer H, Coop G, Barton NH. Inferring recent demography from isolation by distance of long shared sequence blocks. <i>Genetics</i>. 2017;205(3):1335-1351. doi:<a href=\"https://doi.org/10.1534/genetics.116.196220\">10.1534/genetics.116.196220</a>","apa":"Ringbauer, H., Coop, G., &#38; Barton, N. H. (2017). Inferring recent demography from isolation by distance of long shared sequence blocks. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.116.196220\">https://doi.org/10.1534/genetics.116.196220</a>","mla":"Ringbauer, Harald, et al. “Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks.” <i>Genetics</i>, vol. 205, no. 3, Genetics Society of America, 2017, pp. 1335–51, doi:<a href=\"https://doi.org/10.1534/genetics.116.196220\">10.1534/genetics.116.196220</a>.","ista":"Ringbauer H, Coop G, Barton NH. 2017. Inferring recent demography from isolation by distance of long shared sequence blocks. Genetics. 205(3), 1335–1351."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","department":[{"_id":"NiBa"}],"oa_version":"Preprint","date_updated":"2025-05-28T11:42:51Z","type":"journal_article","scopus_import":"1","external_id":{"isi":["000395807200023"]},"_id":"1074","volume":205,"article_processing_charge":"No","publication":"Genetics","main_file_link":[{"open_access":"1","url":"http://www.biorxiv.org/content/early/2016/09/23/076810"}],"year":"2017","date_created":"2018-12-11T11:50:00Z","quality_controlled":"1","date_published":"2017-03-01T00:00:00Z","title":"Inferring recent demography from isolation by distance of long shared sequence blocks","project":[{"call_identifier":"FP7","_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152"}],"ec_funded":1,"day":"01","publication_status":"published","month":"03","related_material":{"record":[{"relation":"dissertation_contains","id":"200","status":"public"}]},"isi":1,"doi":"10.1534/genetics.116.196220","abstract":[{"lang":"eng","text":"Recently it has become feasible to detect long blocks of nearly identical sequence shared between pairs of genomes. These IBD blocks are direct traces of recent coalescence events and, as such, contain ample signal to infer recent demography. Here, we examine sharing of such blocks in two-dimensional populations with local migration. Using a diffusion approximation to trace genetic ancestry, we derive analytical formulae for patterns of isolation by distance of IBD blocks, which can also incorporate recent population density changes. We introduce an inference scheme that uses a composite likelihood approach to fit these formulae. We then extensively evaluate our theory and inference method on a range of scenarios using simulated data. We first validate the diffusion approximation by showing that the theoretical results closely match the simulated block sharing patterns. We then demonstrate that our inference scheme can accurately and robustly infer dispersal rate and effective density, as well as bounds on recent dynamics of population density. To demonstrate an application, we use our estimation scheme to explore the fit of a diffusion model to Eastern European samples in the POPRES data set. We show that ancestry diffusing with a rate of σ ≈ 50–100 km/√gen during the last centuries, combined with accelerating population growth, can explain the observed exponential decay of block sharing with increasing pairwise sample distance."}],"publist_id":"6307","issue":"3","publication_identifier":{"issn":["00166731"]},"status":"public","language":[{"iso":"eng"}],"page":"1335 - 1351","intvolume":"       205","publisher":"Genetics Society of America"},{"date_created":"2018-12-11T11:50:01Z","publication":" Physical Review A - Atomic, Molecular, and Optical Physics","article_processing_charge":"No","volume":95,"year":"2017","main_file_link":[{"url":"https://arxiv.org/abs/1609.07018","open_access":"1"}],"quality_controlled":"1","project":[{"name":"International IST Postdoc Fellowship Programme","grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"title":"Strong-field ionization via a high-order Coulomb-corrected strong-field approximation","date_published":"2017-02-01T00:00:00Z","type":"journal_article","citation":{"ista":"Klaiber M, Daněk J, Yakaboylu E, Hatsagortsyan K, Keitel C. 2017. Strong-field ionization via a high-order Coulomb-corrected strong-field approximation.  Physical Review A - Atomic, Molecular, and Optical Physics. 95(2), 023403.","mla":"Klaiber, Michael, et al. “Strong-Field Ionization via a High-Order Coulomb-Corrected Strong-Field Approximation.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 95, no. 2, 023403, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">10.1103/PhysRevA.95.023403</a>.","apa":"Klaiber, M., Daněk, J., Yakaboylu, E., Hatsagortsyan, K., &#38; Keitel, C. (2017). Strong-field ionization via a high-order Coulomb-corrected strong-field approximation. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">https://doi.org/10.1103/PhysRevA.95.023403</a>","ieee":"M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, and C. Keitel, “Strong-field ionization via a high-order Coulomb-corrected strong-field approximation,” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>, vol. 95, no. 2. American Physical Society, 2017.","ama":"Klaiber M, Daněk J, Yakaboylu E, Hatsagortsyan K, Keitel C. Strong-field ionization via a high-order Coulomb-corrected strong-field approximation. <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. 2017;95(2). doi:<a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">10.1103/PhysRevA.95.023403</a>","short":"M. Klaiber, J. Daněk, E. Yakaboylu, K. Hatsagortsyan, C. Keitel,  Physical Review A - Atomic, Molecular, and Optical Physics 95 (2017).","chicago":"Klaiber, Michael, Jiří Daněk, Enderalp Yakaboylu, Karen Hatsagortsyan, and Christoph Keitel. “Strong-Field Ionization via a High-Order Coulomb-Corrected Strong-Field Approximation.” <i> Physical Review A - Atomic, Molecular, and Optical Physics</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevA.95.023403\">https://doi.org/10.1103/PhysRevA.95.023403</a>."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"full_name":"Klaiber, Michael","first_name":"Michael","last_name":"Klaiber"},{"full_name":"Daněk, Jiří","first_name":"Jiří","last_name":"Daněk"},{"last_name":"Yakaboylu","orcid":"0000-0001-5973-0874","full_name":"Yakaboylu, Enderalp","id":"38CB71F6-F248-11E8-B48F-1D18A9856A87","first_name":"Enderalp"},{"first_name":"Karen","full_name":"Hatsagortsyan, Karen","last_name":"Hatsagortsyan"},{"first_name":"Christoph","full_name":"Keitel, Christoph","last_name":"Keitel"}],"oa":1,"oa_version":"Submitted Version","date_updated":"2023-09-20T11:57:23Z","department":[{"_id":"MiLe"}],"_id":"1076","scopus_import":"1","external_id":{"isi":["000400571700011"]},"article_number":"023403","intvolume":"        95","language":[{"iso":"eng"}],"publisher":"American Physical Society","isi":1,"month":"02","day":"01","ec_funded":1,"publication_status":"published","publication_identifier":{"issn":["24699926"]},"status":"public","doi":"10.1103/PhysRevA.95.023403","publist_id":"6305","abstract":[{"text":"Signatures of the Coulomb corrections in the photoelectron momentum distribution during laser-induced ionization of atoms or ions in tunneling and multiphoton regimes are investigated analytically in the case of a one-dimensional problem. A high-order Coulomb-corrected strong-field approximation is applied, where the exact continuum state in the S matrix is approximated by the eikonal Coulomb-Volkov state including the second-order corrections to the eikonal. Although without high-order corrections our theory coincides with the known analytical R-matrix (ARM) theory, we propose a simplified procedure for the matrix element derivation. Rather than matching the eikonal Coulomb-Volkov wave function with the bound state as in the ARM theory to remove the Coulomb singularity, we calculate the matrix element via the saddle-point integration method by time as well as by coordinate, and in this way avoiding the Coulomb singularity. The momentum shift in the photoelectron momentum distribution with respect to the ARM theory due to high-order corrections is analyzed for tunneling and multiphoton regimes. The relation of the quantum corrections to the tunneling delay time is discussed.","lang":"eng"}],"issue":"2"},{"ec_funded":1,"day":"04","publication_status":"published","related_material":{"record":[{"status":"public","id":"9864","relation":"research_data"}]},"month":"01","isi":1,"abstract":[{"text":"Viral capsids are structurally constrained by interactions among the amino acids (AAs) of their constituent proteins. Therefore, epistasis is expected to evolve among physically interacting sites and to influence the rates of substitution. To study the evolution of epistasis, we focused on the major structural protein of the fX174 phage family by first reconstructing the ancestral protein sequences of 18 species using a Bayesian statistical framework. The inferred ancestral reconstruction differed at eight AAs, for a total of 256 possible ancestral haplotypes. For each ancestral haplotype and the extant species, we estimated, in silico, the distribution of free energies and epistasis of the capsid structure. We found that free energy has not significantly increased but epistasis has. We decomposed epistasis up to fifth order and found that higher-order epistasis sometimes compensates pairwise interactions making the free energy seem additive. The dN/dS ratio is low, suggesting strong purifying selection, and that structure is under stabilizing selection. We synthesized phages carrying ancestral haplotypes of the coat protein gene and measured their fitness experimentally. Our findings indicate that stabilizing mutations can have higher fitness, and that fitness optima do not necessarily coincide with energy minima.","lang":"eng"}],"doi":"10.1098/rsif.2016.0139","publist_id":"6303","issue":"126","publication_identifier":{"issn":["17425689"]},"status":"public","language":[{"iso":"eng"}],"intvolume":"        14","article_number":"20160139","publisher":"Royal Society of London","oa":1,"author":[{"full_name":"Fernandes Redondo, Rodrigo A","first_name":"Rodrigo A","id":"409D5C96-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5837-2793","last_name":"Fernandes Redondo"},{"id":"2A181218-F248-11E8-B48F-1D18A9856A87","first_name":"Harold","full_name":"Vladar, Harold","orcid":"0000-0002-5985-7653","last_name":"Vladar"},{"first_name":"Tomasz","full_name":"Włodarski, Tomasz","last_name":"Włodarski"},{"last_name":"Bollback","orcid":"0000-0002-4624-4612","first_name":"Jonathan P","full_name":"Bollback, Jonathan P","id":"2C6FA9CC-F248-11E8-B48F-1D18A9856A87"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"chicago":"Fernandes Redondo, Rodrigo A, Harold de Vladar, Tomasz Włodarski, and Jonathan P Bollback. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” <i>Journal of the Royal Society Interface</i>. Royal Society of London, 2017. <a href=\"https://doi.org/10.1098/rsif.2016.0139\">https://doi.org/10.1098/rsif.2016.0139</a>.","short":"R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, Journal of the Royal Society Interface 14 (2017).","ama":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. <i>Journal of the Royal Society Interface</i>. 2017;14(126). doi:<a href=\"https://doi.org/10.1098/rsif.2016.0139\">10.1098/rsif.2016.0139</a>","ieee":"R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family,” <i>Journal of the Royal Society Interface</i>, vol. 14, no. 126. Royal Society of London, 2017.","apa":"Fernandes Redondo, R. A., de Vladar, H., Włodarski, T., &#38; Bollback, J. P. (2017). Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. <i>Journal of the Royal Society Interface</i>. Royal Society of London. <a href=\"https://doi.org/10.1098/rsif.2016.0139\">https://doi.org/10.1098/rsif.2016.0139</a>","mla":"Fernandes Redondo, Rodrigo A., et al. “Evolutionary Interplay between Structure, Energy and Epistasis in the Coat Protein of the ΦX174 Phage Family.” <i>Journal of the Royal Society Interface</i>, vol. 14, no. 126, 20160139, Royal Society of London, 2017, doi:<a href=\"https://doi.org/10.1098/rsif.2016.0139\">10.1098/rsif.2016.0139</a>.","ista":"Fernandes Redondo RA, de Vladar H, Włodarski T, Bollback JP. 2017. Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family. Journal of the Royal Society Interface. 14(126), 20160139."},"has_accepted_license":"1","file":[{"creator":"dernst","relation":"main_file","date_updated":"2019-01-18T09:14:02Z","content_type":"application/pdf","file_size":1092015,"file_name":"2017_JRSI_Redondo.pdf","file_id":"5843","date_created":"2019-01-18T09:14:02Z","success":1,"access_level":"open_access"}],"department":[{"_id":"NiBa"},{"_id":"JoBo"}],"date_updated":"2025-05-28T11:42:51Z","oa_version":"Published Version","type":"journal_article","scopus_import":"1","file_date_updated":"2019-01-18T09:14:02Z","external_id":{"isi":["000393380400001"]},"_id":"1077","volume":14,"article_processing_charge":"Yes (in subscription journal)","publication":"Journal of the Royal Society Interface","year":"2017","date_created":"2018-12-11T11:50:01Z","ddc":["570"],"quality_controlled":"1","date_published":"2017-01-04T00:00:00Z","title":"Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family","project":[{"call_identifier":"FP7","_id":"25B07788-B435-11E9-9278-68D0E5697425","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152"},{"_id":"2578D616-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Selective Barriers to Horizontal Gene Transfer","grant_number":"648440"}],"tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"}},{"type":"journal_article","pubrep_id":"808","oa":1,"author":[{"full_name":"Von Wangenheim, Daniel","id":"49E91952-F248-11E8-B48F-1D18A9856A87","first_name":"Daniel","orcid":"0000-0002-6862-1247","last_name":"Von Wangenheim"},{"orcid":"0000-0001-9843-3522","full_name":"Hauschild, Robert","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Hauschild"},{"first_name":"Jirí","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml"}],"has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"D. von Wangenheim, R. Hauschild, and J. Friml, “Light sheet fluorescence microscopy of plant roots growing on the surface of a gel,” <i>Journal of visualized experiments JoVE</i>, vol. 2017, no. 119. Journal of Visualized Experiments, 2017.","ama":"von Wangenheim D, Hauschild R, Friml J. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of visualized experiments JoVE</i>. 2017;2017(119). doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>","short":"D. von Wangenheim, R. Hauschild, J. Friml, Journal of Visualized Experiments JoVE 2017 (2017).","chicago":"Wangenheim, Daniel von, Robert Hauschild, and Jiří Friml. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments, 2017. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>.","ista":"von Wangenheim D, Hauschild R, Friml J. 2017. Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. Journal of visualized experiments JoVE. 2017(119), e55044.","mla":"von Wangenheim, Daniel, et al. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” <i>Journal of Visualized Experiments JoVE</i>, vol. 2017, no. 119, e55044, Journal of Visualized Experiments, 2017, doi:<a href=\"https://doi.org/10.3791/55044\">10.3791/55044</a>.","apa":"von Wangenheim, D., Hauschild, R., &#38; Friml, J. (2017). Light sheet fluorescence microscopy of plant roots growing on the surface of a gel. <i>Journal of Visualized Experiments JoVE</i>. Journal of Visualized Experiments. <a href=\"https://doi.org/10.3791/55044\">https://doi.org/10.3791/55044</a>"},"file":[{"relation":"main_file","creator":"system","access_level":"open_access","date_created":"2018-12-12T10:16:31Z","file_id":"5219","file_name":"IST-2017-808-v1+1_2017_VWangenheim_list.pdf","file_size":57678,"content_type":"application/pdf","date_updated":"2018-12-12T10:16:31Z"},{"access_level":"open_access","date_created":"2018-12-12T10:16:32Z","file_id":"5220","file_name":"IST-2017-808-v1+2_2017_VWangenheim_article.pdf","file_size":1317820,"date_updated":"2018-12-12T10:16:32Z","content_type":"application/pdf","relation":"main_file","creator":"system"}],"department":[{"_id":"JiFr"},{"_id":"Bio"}],"date_updated":"2025-05-07T11:12:33Z","oa_version":"Published Version","_id":"1078","scopus_import":"1","file_date_updated":"2018-12-12T10:16:32Z","external_id":{"isi":["000397847200041"]},"date_created":"2018-12-11T11:50:01Z","ddc":["580"],"volume":2017,"article_processing_charge":"No","publication":"Journal of visualized experiments JoVE","year":"2017","title":"Light sheet fluorescence microscopy of plant roots growing on the surface of a gel","date_published":"2017-01-18T00:00:00Z","project":[{"call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme"},{"_id":"25716A02-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants","grant_number":"282300"}],"related_material":{"record":[{"relation":"popular_science","id":"5565","status":"public"}]},"month":"01","isi":1,"ec_funded":1,"day":"18","publication_status":"published","status":"public","doi":"10.3791/55044","abstract":[{"text":"One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. ","lang":"eng"}],"publist_id":"6302","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"Bio"}],"issue":"119","intvolume":"      2017","article_number":"e55044","language":[{"iso":"eng"}],"publisher":"Journal of Visualized Experiments"},{"publication_identifier":{"issn":["13850172"]},"status":"public","doi":"10.1007/s11040-017-9238-0","abstract":[{"text":"We study the ionization problem in the Thomas-Fermi-Dirac-von Weizsäcker theory for atoms and molecules. We prove the nonexistence of minimizers for the energy functional when the number of electrons is large and the total nuclear charge is small. This nonexistence result also applies to external potentials decaying faster than the Coulomb potential. In the case of arbitrary nuclear charges, we obtain the nonexistence of stable minimizers and radial minimizers.","lang":"eng"}],"publist_id":"6300","issue":"2","isi":1,"month":"06","day":"01","publication_status":"published","publisher":"Springer","article_number":"6","intvolume":"        20","language":[{"iso":"eng"}],"_id":"1079","scopus_import":"1","external_id":{"isi":["000401270000004"]},"type":"journal_article","citation":{"ieee":"P. Nam and H. Van Den Bosch, “Nonexistence in Thomas Fermi-Dirac-von Weizsäcker theory with small nuclear charges,” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 20, no. 2. Springer, 2017.","chicago":"Nam, Phan, and Hanne Van Den Bosch. “Nonexistence in Thomas Fermi-Dirac-von Weizsäcker Theory with Small Nuclear Charges.” <i>Mathematical Physics, Analysis and Geometry</i>. Springer, 2017. <a href=\"https://doi.org/10.1007/s11040-017-9238-0\">https://doi.org/10.1007/s11040-017-9238-0</a>.","short":"P. Nam, H. Van Den Bosch, Mathematical Physics, Analysis and Geometry 20 (2017).","ama":"Nam P, Van Den Bosch H. Nonexistence in Thomas Fermi-Dirac-von Weizsäcker theory with small nuclear charges. <i>Mathematical Physics, Analysis and Geometry</i>. 2017;20(2). doi:<a href=\"https://doi.org/10.1007/s11040-017-9238-0\">10.1007/s11040-017-9238-0</a>","apa":"Nam, P., &#38; Van Den Bosch, H. (2017). Nonexistence in Thomas Fermi-Dirac-von Weizsäcker theory with small nuclear charges. <i>Mathematical Physics, Analysis and Geometry</i>. Springer. <a href=\"https://doi.org/10.1007/s11040-017-9238-0\">https://doi.org/10.1007/s11040-017-9238-0</a>","mla":"Nam, Phan, and Hanne Van Den Bosch. “Nonexistence in Thomas Fermi-Dirac-von Weizsäcker Theory with Small Nuclear Charges.” <i>Mathematical Physics, Analysis and Geometry</i>, vol. 20, no. 2, 6, Springer, 2017, doi:<a href=\"https://doi.org/10.1007/s11040-017-9238-0\">10.1007/s11040-017-9238-0</a>.","ista":"Nam P, Van Den Bosch H. 2017. Nonexistence in Thomas Fermi-Dirac-von Weizsäcker theory with small nuclear charges. Mathematical Physics, Analysis and Geometry. 20(2), 6."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"full_name":"Nam, Phan","first_name":"Phan","id":"404092F4-F248-11E8-B48F-1D18A9856A87","last_name":"Nam"},{"last_name":"Van Den Bosch","full_name":"Van Den Bosch, Hanne","first_name":"Hanne"}],"oa":1,"oa_version":"Submitted Version","date_updated":"2023-09-20T11:53:35Z","department":[{"_id":"RoSe"}],"quality_controlled":"1","project":[{"_id":"25C878CE-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Structure of the Excitation Spectrum for Many-Body Quantum Systems","grant_number":"P27533_N27"}],"title":"Nonexistence in Thomas Fermi-Dirac-von Weizsäcker theory with small nuclear charges","date_published":"2017-06-01T00:00:00Z","date_created":"2018-12-11T11:50:02Z","publication":"Mathematical Physics, Analysis and Geometry","volume":20,"article_processing_charge":"No","main_file_link":[{"url":"https://arxiv.org/abs/1603.07368","open_access":"1"}],"year":"2017"},{"pubrep_id":"786","type":"journal_article","file":[{"file_id":"5133","date_created":"2018-12-12T10:15:15Z","access_level":"open_access","content_type":"application/pdf","date_updated":"2018-12-12T10:15:15Z","file_size":897050,"file_name":"IST-2017-786-v1+1_ncomms14114.pdf","creator":"system","relation":"main_file"}],"department":[{"_id":"KrCh"}],"oa_version":"Published Version","date_updated":"2023-09-20T11:55:31Z","author":[{"last_name":"Reiter","full_name":"Reiter, Johannes","first_name":"Johannes","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0170-7353"},{"last_name":"Makohon Moore","first_name":"Alvin","full_name":"Makohon Moore, Alvin"},{"last_name":"Gerold","full_name":"Gerold, Jeffrey","first_name":"Jeffrey"},{"full_name":"Božić, Ivana","first_name":"Ivana","last_name":"Božić"},{"orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee"},{"last_name":"Iacobuzio Donahue","full_name":"Iacobuzio Donahue, Christine","first_name":"Christine"},{"full_name":"Vogelstein, Bert","first_name":"Bert","last_name":"Vogelstein"},{"last_name":"Nowak","full_name":"Nowak, Martin","first_name":"Martin"}],"oa":1,"has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"mla":"Reiter, Johannes, et al. “Reconstructing Metastatic Seeding Patterns of Human Cancers.” <i>Nature Communications</i>, vol. 8, 14114, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/ncomms14114\">10.1038/ncomms14114</a>.","apa":"Reiter, J., Makohon Moore, A., Gerold, J., Božić, I., Chatterjee, K., Iacobuzio Donahue, C., … Nowak, M. (2017). Reconstructing metastatic seeding patterns of human cancers. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms14114\">https://doi.org/10.1038/ncomms14114</a>","ista":"Reiter J, Makohon Moore A, Gerold J, Božić I, Chatterjee K, Iacobuzio Donahue C, Vogelstein B, Nowak M. 2017. Reconstructing metastatic seeding patterns of human cancers. Nature Communications. 8, 14114.","ieee":"J. Reiter <i>et al.</i>, “Reconstructing metastatic seeding patterns of human cancers,” <i>Nature Communications</i>, vol. 8. Nature Publishing Group, 2017.","chicago":"Reiter, Johannes, Alvin Makohon Moore, Jeffrey Gerold, Ivana Božić, Krishnendu Chatterjee, Christine Iacobuzio Donahue, Bert Vogelstein, and Martin Nowak. “Reconstructing Metastatic Seeding Patterns of Human Cancers.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/ncomms14114\">https://doi.org/10.1038/ncomms14114</a>.","short":"J. Reiter, A. Makohon Moore, J. Gerold, I. Božić, K. Chatterjee, C. Iacobuzio Donahue, B. Vogelstein, M. Nowak, Nature Communications 8 (2017).","ama":"Reiter J, Makohon Moore A, Gerold J, et al. Reconstructing metastatic seeding patterns of human cancers. <i>Nature Communications</i>. 2017;8. doi:<a href=\"https://doi.org/10.1038/ncomms14114\">10.1038/ncomms14114</a>"},"_id":"1080","external_id":{"isi":["000393096600001"]},"scopus_import":"1","file_date_updated":"2018-12-12T10:15:15Z","date_created":"2018-12-11T11:50:02Z","ddc":["004","006"],"year":"2017","volume":8,"article_processing_charge":"No","publication":"Nature Communications","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2017-01-31T00:00:00Z","title":"Reconstructing metastatic seeding patterns of human cancers","project":[{"call_identifier":"FP7","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307"},{"grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"Game Theory","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"}],"quality_controlled":"1","month":"01","isi":1,"publication_status":"published","ec_funded":1,"day":"31","status":"public","publication_identifier":{"issn":["20411723"]},"publist_id":"6301","abstract":[{"lang":"eng","text":"Reconstructing the evolutionary history of metastases is critical for understanding their basic biological principles and has profound clinical implications. Genome-wide sequencing data has enabled modern phylogenomic methods to accurately dissect subclones and their phylogenies from noisy and impure bulk tumour samples at unprecedented depth. However, existing methods are not designed to infer metastatic seeding patterns. Here we develop a tool, called Treeomics, to reconstruct the phylogeny of metastases and map subclones to their anatomic locations. Treeomics infers comprehensive seeding patterns for pancreatic, ovarian, and prostate cancers. Moreover, Treeomics correctly disambiguates true seeding patterns from sequencing artifacts; 7% of variants were misclassified by conventional statistical methods. These artifacts can skew phylogenies by creating illusory tumour heterogeneity among distinct samples. In silico benchmarking on simulated tumour phylogenies across a wide range of sample purities (15–95%) and sequencing depths (25-800 × ) demonstrates the accuracy of Treeomics compared with existing methods."}],"doi":"10.1038/ncomms14114","intvolume":"         8","article_number":"14114","language":[{"iso":"eng"}],"publisher":"Nature Publishing Group"},{"oa_version":"None","date_updated":"2023-09-20T11:48:43Z","department":[{"_id":"CaGu"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ista":"Fang C, Nagy-Staron AA, Grafe M, Heermann R, Jung K, Gebhard S, Mascher T. 2017. Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. Molecular Microbiology. 104(1), 16–31.","apa":"Fang, C., Nagy-Staron, A. A., Grafe, M., Heermann, R., Jung, K., Gebhard, S., &#38; Mascher, T. (2017). Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. <i>Molecular Microbiology</i>. Wiley-Blackwell. <a href=\"https://doi.org/10.1111/mmi.13597\">https://doi.org/10.1111/mmi.13597</a>","mla":"Fang, Chong, et al. “Insulation and Wiring Specificity of BceR like Response Regulators and Their Target Promoters in Bacillus Subtilis.” <i>Molecular Microbiology</i>, vol. 104, no. 1, Wiley-Blackwell, 2017, pp. 16–31, doi:<a href=\"https://doi.org/10.1111/mmi.13597\">10.1111/mmi.13597</a>.","ama":"Fang C, Nagy-Staron AA, Grafe M, et al. Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis. <i>Molecular Microbiology</i>. 2017;104(1):16-31. doi:<a href=\"https://doi.org/10.1111/mmi.13597\">10.1111/mmi.13597</a>","short":"C. Fang, A.A. Nagy-Staron, M. Grafe, R. Heermann, K. Jung, S. Gebhard, T. Mascher, Molecular Microbiology 104 (2017) 16–31.","chicago":"Fang, Chong, Anna A Nagy-Staron, Martin Grafe, Ralf Heermann, Kirsten Jung, Susanne Gebhard, and Thorsten Mascher. “Insulation and Wiring Specificity of BceR like Response Regulators and Their Target Promoters in Bacillus Subtilis.” <i>Molecular Microbiology</i>. Wiley-Blackwell, 2017. <a href=\"https://doi.org/10.1111/mmi.13597\">https://doi.org/10.1111/mmi.13597</a>.","ieee":"C. Fang <i>et al.</i>, “Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis,” <i>Molecular Microbiology</i>, vol. 104, no. 1. Wiley-Blackwell, pp. 16–31, 2017."},"author":[{"full_name":"Fang, Chong","first_name":"Chong","last_name":"Fang"},{"orcid":"0000-0002-1391-8377","first_name":"Anna A","id":"3ABC5BA6-F248-11E8-B48F-1D18A9856A87","full_name":"Nagy-Staron, Anna A","last_name":"Nagy-Staron"},{"last_name":"Grafe","first_name":"Martin","full_name":"Grafe, Martin"},{"last_name":"Heermann","first_name":"Ralf","full_name":"Heermann, Ralf"},{"full_name":"Jung, Kirsten","first_name":"Kirsten","last_name":"Jung"},{"last_name":"Gebhard","full_name":"Gebhard, Susanne","first_name":"Susanne"},{"first_name":"Thorsten","full_name":"Mascher, Thorsten","last_name":"Mascher"}],"type":"journal_article","external_id":{"isi":["000398059200002"]},"scopus_import":"1","_id":"1084","year":"2017","publication":"Molecular Microbiology","volume":104,"article_processing_charge":"No","date_created":"2018-12-11T11:50:03Z","date_published":"2017-04-01T00:00:00Z","title":"Insulation and wiring specificity of BceR like response regulators and their target promoters in Bacillus subtilis","quality_controlled":"1","publication_status":"published","day":"01","isi":1,"month":"04","issue":"1","abstract":[{"text":"BceRS and PsdRS are paralogous two-component systems in Bacillus subtilis controlling the response to antimicrobial peptides. In the presence of extracellular bacitracin and nisin, respectively, the two response regulators (RRs) bind their target promoters, PbceA or PpsdA, resulting in a strong up-regulation of target gene expression and ultimately antibiotic resistance. Despite high sequence similarity between the RRs BceR and PsdR and their known binding sites, no cross-regulation has been observed between them. We therefore investigated the specificity determinants of PbceA and PpsdA that ensure the insulation of these two paralogous pathways at the RR–promoter interface. In vivo and in vitro analyses demonstrate that the regulatory regions within these two promoters contain three important elements: in addition to the known (main) binding site, we identified a linker region and a secondary binding site that are crucial for functionality. Initial binding to the high-affinity, low-specificity main binding site is a prerequisite for the subsequent highly specific binding of a second RR dimer to the low-affinity secondary binding site. In addition to this hierarchical cooperative binding, discrimination requires a competition of the two RRs for their respective binding site mediated by only slight differences in binding affinities.","lang":"eng"}],"publist_id":"6294","doi":"10.1111/mmi.13597","status":"public","publication_identifier":{"issn":[" 0950382X"]},"language":[{"iso":"eng"}],"intvolume":"       104","page":"16 - 31","publisher":"Wiley-Blackwell"},{"publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"article_number":"14251","intvolume":"         8","publist_id":"6292","doi":"10.1038/ncomms14251","abstract":[{"text":"Sex chromosomes evolve once recombination is halted between a homologous pair of chromosomes. The dominant model of sex chromosome evolution posits that recombination is suppressed between emerging X and Y chromosomes in order to resolve sexual conflict. Here we test this model using whole genome and transcriptome resequencing data in the guppy, a model for sexual selection with many Y-linked colour traits. We show that although the nascent Y chromosome encompasses nearly half of the linkage group, there has been no perceptible degradation of Y chromosome gene content or activity. Using replicate wild populations with differing levels of sexually antagonistic selection for colour, we also show that sexual selection leads to greater expansion of the non-recombining region and increased Y chromosome divergence. These results provide empirical support for longstanding models of sex chromosome catalysis, and suggest an important role for sexual selection and sexual conflict in genome evolution.","lang":"eng"}],"status":"public","publication_identifier":{"issn":["20411723"]},"publication_status":"published","day":"31","isi":1,"month":"01","title":"Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation","date_published":"2017-01-31T00:00:00Z","quality_controlled":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2017","publication":"Nature Communications","volume":8,"article_processing_charge":"No","ddc":["570","576"],"date_created":"2018-12-11T11:50:04Z","external_id":{"isi":["000392953700001"]},"file_date_updated":"2018-12-12T10:15:22Z","scopus_import":"1","_id":"1085","date_updated":"2023-09-20T11:48:16Z","oa_version":"Published Version","file":[{"creator":"system","relation":"main_file","content_type":"application/pdf","date_updated":"2018-12-12T10:15:22Z","file_size":955256,"file_name":"IST-2017-791-v1+1_ncomms14251.pdf","file_id":"5141","date_created":"2018-12-12T10:15:22Z","access_level":"open_access"}],"department":[{"_id":"BeVi"}],"has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"mla":"Wright, Alison, et al. “Convergent Recombination Suppression Suggests Role of Sexual Selection in Guppy Sex Chromosome Formation.” <i>Nature Communications</i>, vol. 8, 14251, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/ncomms14251\">10.1038/ncomms14251</a>.","apa":"Wright, A., Darolti, I., Bloch, N., Oostra, V., Sandkam, B., Buechel, S., … Mank, J. (2017). Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/ncomms14251\">https://doi.org/10.1038/ncomms14251</a>","ista":"Wright A, Darolti I, Bloch N, Oostra V, Sandkam B, Buechel S, Kolm N, Breden F, Vicoso B, Mank J. 2017. Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation. Nature Communications. 8, 14251.","chicago":"Wright, Alison, Iulia Darolti, Natasha Bloch, Vicencio Oostra, Benjamin Sandkam, Séverine Buechel, Niclas Kolm, Felix Breden, Beatriz Vicoso, and Judith Mank. “Convergent Recombination Suppression Suggests Role of Sexual Selection in Guppy Sex Chromosome Formation.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/ncomms14251\">https://doi.org/10.1038/ncomms14251</a>.","short":"A. Wright, I. Darolti, N. Bloch, V. Oostra, B. Sandkam, S. Buechel, N. Kolm, F. Breden, B. Vicoso, J. Mank, Nature Communications 8 (2017).","ama":"Wright A, Darolti I, Bloch N, et al. Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation. <i>Nature Communications</i>. 2017;8. doi:<a href=\"https://doi.org/10.1038/ncomms14251\">10.1038/ncomms14251</a>","ieee":"A. Wright <i>et al.</i>, “Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation,” <i>Nature Communications</i>, vol. 8. Nature Publishing Group, 2017."},"author":[{"last_name":"Wright","first_name":"Alison","full_name":"Wright, Alison"},{"full_name":"Darolti, Iulia","first_name":"Iulia","last_name":"Darolti"},{"last_name":"Bloch","full_name":"Bloch, Natasha","first_name":"Natasha"},{"last_name":"Oostra","full_name":"Oostra, Vicencio","first_name":"Vicencio"},{"first_name":"Benjamin","full_name":"Sandkam, Benjamin","last_name":"Sandkam"},{"first_name":"Séverine","full_name":"Buechel, Séverine","last_name":"Buechel"},{"full_name":"Kolm, Niclas","first_name":"Niclas","last_name":"Kolm"},{"last_name":"Breden","first_name":"Felix","full_name":"Breden, Felix"},{"last_name":"Vicoso","full_name":"Vicoso, Beatriz","first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306"},{"last_name":"Mank","first_name":"Judith","full_name":"Mank, Judith"}],"oa":1,"pubrep_id":"791","type":"journal_article"},{"publisher":"Cambridge University Press","language":[{"iso":"eng"}],"page":"1045 - 1059","intvolume":"       813","publist_id":"6290","doi":"10.1017/jfm.2017.14","abstract":[{"text":"Using extensive direct numerical simulations, the dynamics of laminar-turbulent fronts in pipe flow is investigated for Reynolds numbers between and 5500. We here investigate the physical distinction between the fronts of weak and strong slugs both by analysing the turbulent kinetic energy budget and by comparing the downstream front motion to the advection speed of bulk turbulent structures. Our study shows that weak downstream fronts travel slower than turbulent structures in the bulk and correspond to decaying turbulence at the front. At the downstream front speed becomes faster than the advection speed, marking the onset of strong fronts. In contrast to weak fronts, turbulent eddies are generated at strong fronts by feeding on the downstream laminar flow. Our study also suggests that temporal fluctuations of production and dissipation at the downstream laminar-turbulent front drive the dynamical switches between the two types of front observed up to.","lang":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"publication_identifier":{"issn":["00221120"]},"status":"public","ec_funded":1,"day":"25","publication_status":"published","month":"02","isi":1,"quality_controlled":"1","date_published":"2017-02-25T00:00:00Z","title":"Speed and structure of turbulent fronts in pipe flow","project":[{"grant_number":"306589","name":"Decoding the complexity of turbulence at its origin","call_identifier":"FP7","_id":"25152F3A-B435-11E9-9278-68D0E5697425"}],"volume":813,"article_processing_charge":"No","publication":"Journal of Fluid Mechanics","main_file_link":[{"url":"https://arxiv.org/abs/1603.04077","open_access":"1"}],"year":"2017","date_created":"2018-12-11T11:50:04Z","scopus_import":"1","external_id":{"isi":["000394376400044"]},"_id":"1087","author":[{"first_name":"Baofang","full_name":"Song, Baofang","last_name":"Song"},{"last_name":"Barkley","full_name":"Barkley, Dwight","first_name":"Dwight"},{"first_name":"Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87","full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","last_name":"Hof"},{"last_name":"Avila","first_name":"Marc","full_name":"Avila, Marc"}],"oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"apa":"Song, B., Barkley, D., Hof, B., &#38; Avila, M. (2017). Speed and structure of turbulent fronts in pipe flow. <i>Journal of Fluid Mechanics</i>. Cambridge University Press. <a href=\"https://doi.org/10.1017/jfm.2017.14\">https://doi.org/10.1017/jfm.2017.14</a>","mla":"Song, Baofang, et al. “Speed and Structure of Turbulent Fronts in Pipe Flow.” <i>Journal of Fluid Mechanics</i>, vol. 813, Cambridge University Press, 2017, pp. 1045–59, doi:<a href=\"https://doi.org/10.1017/jfm.2017.14\">10.1017/jfm.2017.14</a>.","ista":"Song B, Barkley D, Hof B, Avila M. 2017. Speed and structure of turbulent fronts in pipe flow. Journal of Fluid Mechanics. 813, 1045–1059.","ieee":"B. Song, D. Barkley, B. Hof, and M. Avila, “Speed and structure of turbulent fronts in pipe flow,” <i>Journal of Fluid Mechanics</i>, vol. 813. Cambridge University Press, pp. 1045–1059, 2017.","chicago":"Song, Baofang, Dwight Barkley, Björn Hof, and Marc Avila. “Speed and Structure of Turbulent Fronts in Pipe Flow.” <i>Journal of Fluid Mechanics</i>. Cambridge University Press, 2017. <a href=\"https://doi.org/10.1017/jfm.2017.14\">https://doi.org/10.1017/jfm.2017.14</a>.","ama":"Song B, Barkley D, Hof B, Avila M. Speed and structure of turbulent fronts in pipe flow. <i>Journal of Fluid Mechanics</i>. 2017;813:1045-1059. doi:<a href=\"https://doi.org/10.1017/jfm.2017.14\">10.1017/jfm.2017.14</a>","short":"B. Song, D. Barkley, B. Hof, M. Avila, Journal of Fluid Mechanics 813 (2017) 1045–1059."},"department":[{"_id":"BjHo"}],"date_updated":"2023-09-20T11:47:22Z","oa_version":"Submitted Version","type":"journal_article"},{"_id":"1089","external_id":{"isi":["000404395900008"]},"scopus_import":"1","type":"journal_article","date_updated":"2023-09-20T11:46:53Z","oa_version":"Submitted Version","department":[{"_id":"CaUh"}],"citation":{"ieee":"S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, and P. Zwiernik, “Total positivity in Markov structures,” <i>Annals of Statistics</i>, vol. 45, no. 3. Institute of Mathematical Statistics, pp. 1152–1184, 2017.","chicago":"Fallat, Shaun, Steffen Lauritzen, Kayvan Sadeghi, Caroline Uhler, Nanny Wermuth, and Piotr Zwiernik. “Total Positivity in Markov Structures.” <i>Annals of Statistics</i>. Institute of Mathematical Statistics, 2017. <a href=\"https://doi.org/10.1214/16-AOS1478\">https://doi.org/10.1214/16-AOS1478</a>.","short":"S. Fallat, S. Lauritzen, K. Sadeghi, C. Uhler, N. Wermuth, P. Zwiernik, Annals of Statistics 45 (2017) 1152–1184.","ama":"Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. Total positivity in Markov structures. <i>Annals of Statistics</i>. 2017;45(3):1152-1184. doi:<a href=\"https://doi.org/10.1214/16-AOS1478\">10.1214/16-AOS1478</a>","mla":"Fallat, Shaun, et al. “Total Positivity in Markov Structures.” <i>Annals of Statistics</i>, vol. 45, no. 3, Institute of Mathematical Statistics, 2017, pp. 1152–84, doi:<a href=\"https://doi.org/10.1214/16-AOS1478\">10.1214/16-AOS1478</a>.","apa":"Fallat, S., Lauritzen, S., Sadeghi, K., Uhler, C., Wermuth, N., &#38; Zwiernik, P. (2017). Total positivity in Markov structures. <i>Annals of Statistics</i>. Institute of Mathematical Statistics. <a href=\"https://doi.org/10.1214/16-AOS1478\">https://doi.org/10.1214/16-AOS1478</a>","ista":"Fallat S, Lauritzen S, Sadeghi K, Uhler C, Wermuth N, Zwiernik P. 2017. Total positivity in Markov structures. Annals of Statistics. 45(3), 1152–1184."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","author":[{"last_name":"Fallat","first_name":"Shaun","full_name":"Fallat, Shaun"},{"last_name":"Lauritzen","full_name":"Lauritzen, Steffen","first_name":"Steffen"},{"full_name":"Sadeghi, Kayvan","first_name":"Kayvan","last_name":"Sadeghi"},{"last_name":"Uhler","orcid":"0000-0002-7008-0216","full_name":"Uhler, Caroline","first_name":"Caroline","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Wermuth, Nanny","first_name":"Nanny","last_name":"Wermuth"},{"first_name":"Piotr","full_name":"Zwiernik, Piotr","last_name":"Zwiernik"}],"oa":1,"project":[{"_id":"2530CA10-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Gaussian Graphical Models: Theory and Applications","grant_number":"Y 903-N35"}],"title":"Total positivity in Markov structures","date_published":"2017-06-01T00:00:00Z","quality_controlled":"1","date_created":"2018-12-11T11:50:05Z","year":"2017","main_file_link":[{"url":"https://arxiv.org/abs/1510.01290","open_access":"1"}],"publication":"Annals of Statistics","article_processing_charge":"No","volume":45,"status":"public","publication_identifier":{"issn":["00905364"]},"issue":"3","abstract":[{"text":"We discuss properties of distributions that are multivariate totally positive of order two (MTP2) related to conditional independence. In particular, we show that any independence model generated by an MTP2 distribution is a compositional semigraphoid which is upward-stable and singleton-transitive. In addition, we prove that any MTP2 distribution satisfying an appropriate support condition is faithful to its concentration graph. Finally, we analyze factorization properties of MTP2 distributions and discuss ways of constructing MTP2 distributions; in particular we give conditions on the log-linear parameters of a discrete distribution which ensure MTP2 and characterize conditional Gaussian distributions which satisfy MTP2.","lang":"eng"}],"publist_id":"6288","doi":"10.1214/16-AOS1478","isi":1,"month":"06","publication_status":"published","day":"01","publisher":"Institute of Mathematical Statistics","intvolume":"        45","page":"1152 - 1184","language":[{"iso":"eng"}]},{"file_date_updated":"2018-12-12T10:16:06Z","scopus_import":"1","external_id":{"isi":["000417241200004"]},"_id":"1104","citation":{"ieee":"S. Deny <i>et al.</i>, “Multiplexed computations in retinal ganglion cells of a single type,” <i>Nature Communications</i>, vol. 8, no. 1. Nature Publishing Group, 2017.","chicago":"Deny, Stephane, Ulisse Ferrari, Emilie Mace, Pierre Yger, Romain Caplette, Serge Picaud, Gašper Tkačik, and Olivier Marre. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” <i>Nature Communications</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/s41467-017-02159-y\">https://doi.org/10.1038/s41467-017-02159-y</a>.","short":"S. Deny, U. Ferrari, E. Mace, P. Yger, R. Caplette, S. Picaud, G. Tkačik, O. Marre, Nature Communications 8 (2017).","ama":"Deny S, Ferrari U, Mace E, et al. Multiplexed computations in retinal ganglion cells of a single type. <i>Nature Communications</i>. 2017;8(1). doi:<a href=\"https://doi.org/10.1038/s41467-017-02159-y\">10.1038/s41467-017-02159-y</a>","mla":"Deny, Stephane, et al. “Multiplexed Computations in Retinal Ganglion Cells of a Single Type.” <i>Nature Communications</i>, vol. 8, no. 1, 1964, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/s41467-017-02159-y\">10.1038/s41467-017-02159-y</a>.","apa":"Deny, S., Ferrari, U., Mace, E., Yger, P., Caplette, R., Picaud, S., … Marre, O. (2017). Multiplexed computations in retinal ganglion cells of a single type. <i>Nature Communications</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/s41467-017-02159-y\">https://doi.org/10.1038/s41467-017-02159-y</a>","ista":"Deny S, Ferrari U, Mace E, Yger P, Caplette R, Picaud S, Tkačik G, Marre O. 2017. Multiplexed computations in retinal ganglion cells of a single type. Nature Communications. 8(1), 1964."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","has_accepted_license":"1","oa":1,"author":[{"last_name":"Deny","first_name":"Stephane","full_name":"Deny, Stephane"},{"last_name":"Ferrari","full_name":"Ferrari, Ulisse","first_name":"Ulisse"},{"last_name":"Mace","full_name":"Mace, Emilie","first_name":"Emilie"},{"last_name":"Yger","full_name":"Yger, Pierre","first_name":"Pierre"},{"full_name":"Caplette, Romain","first_name":"Romain","last_name":"Caplette"},{"full_name":"Picaud, Serge","first_name":"Serge","last_name":"Picaud"},{"first_name":"Gasper","full_name":"Tkacik, Gasper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","last_name":"Tkacik"},{"last_name":"Marre","full_name":"Marre, Olivier","first_name":"Olivier"}],"date_updated":"2023-09-20T11:41:19Z","oa_version":"Published Version","file":[{"access_level":"open_access","file_id":"5191","date_created":"2018-12-12T10:16:06Z","file_name":"IST-2018-921-v1+1_s41467-017-02159-y.pdf","content_type":"application/pdf","date_updated":"2018-12-12T10:16:06Z","file_size":2872887,"relation":"main_file","creator":"system"}],"department":[{"_id":"GaTk"}],"type":"journal_article","pubrep_id":"921","quality_controlled":"1","project":[{"call_identifier":"FP7","_id":"25CD3DD2-B435-11E9-9278-68D0E5697425","name":"Localization of ion channels and receptors by two and three-dimensional immunoelectron microscopic approaches","grant_number":"604102"},{"name":"Sensitivity to higher-order statistics in natural scenes","grant_number":"P 25651-N26","call_identifier":"FWF","_id":"254D1A94-B435-11E9-9278-68D0E5697425"}],"title":"Multiplexed computations in retinal ganglion cells of a single type","date_published":"2017-12-06T00:00:00Z","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"publication":"Nature Communications","volume":8,"article_processing_charge":"No","year":"2017","ddc":["571"],"date_created":"2018-12-11T11:50:10Z","abstract":[{"lang":"eng","text":"In the early visual system, cells of the same type perform the same computation in different places of the visual field. How these cells code together a complex visual scene is unclear. A common assumption is that cells of a single-type extract a single-stimulus feature to form a feature map, but this has rarely been observed directly. Using large-scale recordings in the rat retina, we show that a homogeneous population of fast OFF ganglion cells simultaneously encodes two radically different features of a visual scene. Cells close to a moving object code quasilinearly for its position, while distant cells remain largely invariant to the object's position and, instead, respond nonlinearly to changes in the object's speed. We develop a quantitative model that accounts for this effect and identify a disinhibitory circuit that mediates it. Ganglion cells of a single type thus do not code for one, but two features simultaneously. This richer, flexible neural map might also be present in other sensory systems."}],"publist_id":"6266","doi":"10.1038/s41467-017-02159-y","issue":"1","publication_identifier":{"issn":["20411723"]},"status":"public","day":"06","ec_funded":1,"publication_status":"published","isi":1,"month":"12","publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"article_number":"1964","intvolume":"         8"},{"abstract":[{"text":"In this work we study the learnability of stochastic processes with respect to the conditional risk, i.e. the existence of a learning algorithm that improves its next-step performance with the amount of observed data. We introduce a notion of pairwise discrepancy between conditional distributions at different times steps and show how certain properties of these discrepancies can be used to construct a successful learning algorithm. Our main results are two theorems that establish criteria for learnability for many classes of stochastic processes, including all special cases studied previously in the literature.","lang":"eng"}],"publist_id":"6261","status":"public","day":"01","ec_funded":1,"publication_status":"published","isi":1,"month":"04","alternative_title":["PMLR"],"publisher":"ML Research Press","language":[{"iso":"eng"}],"page":"213 - 222","intvolume":"        54","external_id":{"isi":["000509368500024"]},"_id":"1108","citation":{"ista":"Zimin A, Lampert C. 2017. Learning theory for conditional risk minimization. AISTATS: Artificial Intelligence and Statistics, PMLR, vol. 54, 213–222.","mla":"Zimin, Alexander, and Christoph Lampert. <i>Learning Theory for Conditional Risk Minimization</i>. Vol. 54, ML Research Press, 2017, pp. 213–22.","apa":"Zimin, A., &#38; Lampert, C. (2017). Learning theory for conditional risk minimization (Vol. 54, pp. 213–222). Presented at the AISTATS: Artificial Intelligence and Statistics, Fort Lauderdale, FL, United States: ML Research Press.","ieee":"A. Zimin and C. Lampert, “Learning theory for conditional risk minimization,” presented at the AISTATS: Artificial Intelligence and Statistics, Fort Lauderdale, FL, United States, 2017, vol. 54, pp. 213–222.","ama":"Zimin A, Lampert C. Learning theory for conditional risk minimization. In: Vol 54. ML Research Press; 2017:213-222.","short":"A. Zimin, C. Lampert, in:, ML Research Press, 2017, pp. 213–222.","chicago":"Zimin, Alexander, and Christoph Lampert. “Learning Theory for Conditional Risk Minimization,” 54:213–22. ML Research Press, 2017."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"author":[{"id":"37099E9C-F248-11E8-B48F-1D18A9856A87","first_name":"Alexander","full_name":"Zimin, Alexander","last_name":"Zimin"},{"last_name":"Lampert","orcid":"0000-0001-8622-7887","first_name":"Christoph","full_name":"Lampert, Christoph","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"}],"date_updated":"2023-10-17T10:01:12Z","oa_version":"Submitted Version","department":[{"_id":"ChLa"}],"type":"conference","quality_controlled":"1","project":[{"call_identifier":"FP7","_id":"2532554C-B435-11E9-9278-68D0E5697425","grant_number":"308036","name":"Lifelong Learning of Visual Scene Understanding"}],"date_published":"2017-04-01T00:00:00Z","title":"Learning theory for conditional risk minimization","conference":{"name":"AISTATS: Artificial Intelligence and Statistics","end_date":"2017-04-22","start_date":"2017-04-20","location":"Fort Lauderdale, FL, United States"},"volume":54,"article_processing_charge":"No","main_file_link":[{"open_access":"1","url":"http://proceedings.mlr.press/v54/zimin17a/zimin17a.pdf"}],"year":"2017","date_created":"2018-12-11T11:50:11Z"},{"language":[{"iso":"eng"}],"article_number":"203203","intvolume":"       118","publisher":"American Physical Society","day":"19","publication_status":"published","isi":1,"month":"05","publist_id":"6260","abstract":[{"text":"Rotation of molecules embedded in He nanodroplets is explored by a combination of fs laser-induced alignment experiments and angulon quasiparticle theory. We demonstrate that at low fluence of the fs alignment pulse, the molecule and its solvation shell can be set into coherent collective rotation lasting long enough to form revivals. With increasing fluence, however, the revivals disappear -- instead, rotational dynamics as rapid as for an isolated molecule is observed during the first few picoseconds. Classical calculations trace this phenomenon to transient decoupling of the molecule from its He shell. Our results open novel opportunities for studying non-equilibrium solute-solvent dynamics and quantum thermalization. ","lang":"eng"}],"doi":"10.1103/PhysRevLett.118.203203","issue":"20","status":"public","publication":"Physical Review Letters","article_processing_charge":"No","volume":118,"main_file_link":[{"url":"https://arxiv.org/abs/1702.01977","open_access":"1"}],"year":"2017","date_created":"2018-12-11T11:50:12Z","quality_controlled":"1","project":[{"grant_number":"P29902","name":"Quantum rotations in the presence of a many-body environment","call_identifier":"FWF","_id":"26031614-B435-11E9-9278-68D0E5697425"}],"date_published":"2017-05-19T00:00:00Z","title":"Laser-induced rotation of iodine molecules in helium nanodroplets: Revivals and breaking-free","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"short":"B. Shepperson, A. Søndergaard, L. Christiansen, J. Kaczmarczyk, R. Zillich, M. Lemeshko, H. Stapelfeldt, Physical Review Letters 118 (2017).","ama":"Shepperson B, Søndergaard A, Christiansen L, et al. Laser-induced rotation of iodine molecules in helium nanodroplets: Revivals and breaking-free. <i>Physical Review Letters</i>. 2017;118(20). doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.203203\">10.1103/PhysRevLett.118.203203</a>","chicago":"Shepperson, Benjamin, Anders Søndergaard, Lars Christiansen, Jan Kaczmarczyk, Robert Zillich, Mikhail Lemeshko, and Henrik Stapelfeldt. “Laser-Induced Rotation of Iodine Molecules in Helium Nanodroplets: Revivals and Breaking-Free.” <i>Physical Review Letters</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevLett.118.203203\">https://doi.org/10.1103/PhysRevLett.118.203203</a>.","ieee":"B. Shepperson <i>et al.</i>, “Laser-induced rotation of iodine molecules in helium nanodroplets: Revivals and breaking-free,” <i>Physical Review Letters</i>, vol. 118, no. 20. American Physical Society, 2017.","ista":"Shepperson B, Søndergaard A, Christiansen L, Kaczmarczyk J, Zillich R, Lemeshko M, Stapelfeldt H. 2017. Laser-induced rotation of iodine molecules in helium nanodroplets: Revivals and breaking-free. Physical Review Letters. 118(20), 203203.","apa":"Shepperson, B., Søndergaard, A., Christiansen, L., Kaczmarczyk, J., Zillich, R., Lemeshko, M., &#38; Stapelfeldt, H. (2017). Laser-induced rotation of iodine molecules in helium nanodroplets: Revivals and breaking-free. <i>Physical Review Letters</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevLett.118.203203\">https://doi.org/10.1103/PhysRevLett.118.203203</a>","mla":"Shepperson, Benjamin, et al. “Laser-Induced Rotation of Iodine Molecules in Helium Nanodroplets: Revivals and Breaking-Free.” <i>Physical Review Letters</i>, vol. 118, no. 20, 203203, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevLett.118.203203\">10.1103/PhysRevLett.118.203203</a>."},"oa":1,"author":[{"last_name":"Shepperson","first_name":"Benjamin","full_name":"Shepperson, Benjamin"},{"last_name":"Søndergaard","full_name":"Søndergaard, Anders","first_name":"Anders"},{"first_name":"Lars","full_name":"Christiansen, Lars","last_name":"Christiansen"},{"last_name":"Kaczmarczyk","full_name":"Kaczmarczyk, Jan","id":"46C405DE-F248-11E8-B48F-1D18A9856A87","first_name":"Jan","orcid":"0000-0002-1629-3675"},{"last_name":"Zillich","full_name":"Zillich, Robert","first_name":"Robert"},{"last_name":"Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Lemeshko, Mikhail"},{"last_name":"Stapelfeldt","full_name":"Stapelfeldt, Henrik","first_name":"Henrik"}],"oa_version":"Preprint","date_updated":"2023-09-20T11:36:17Z","department":[{"_id":"MiLe"}],"type":"journal_article","scopus_import":"1","external_id":{"isi":["000401664000005"]},"_id":"1109"},{"publisher":"Nature Publishing Group","language":[{"iso":"eng"}],"article_number":"41906","intvolume":"         7","doi":"10.1038/srep41906","publist_id":"6258","abstract":[{"text":"The phytohormone auxin is a major determinant and regulatory component important for plant development. Auxin transport between cells is mediated by a complex system of transporters such as AUX1/LAX, PIN, and ABCB proteins, and their localization and activity is thought to be influenced by phosphatases and kinases. Flavonols have been shown to alter auxin transport activity and changes in flavonol accumulation in the Arabidopsis thaliana rol1-2 mutant cause defects in auxin transport and seedling development. A new mutation in ROOTS CURL IN NPA 1 (RCN1), encoding a regulatory subunit of the phosphatase PP2A, was found to suppress the growth defects of rol1-2 without changing the flavonol content. rol1-2 rcn1-3 double mutants show wild type-like auxin transport activity while levels of free auxin are not affected by rcn1-3. In the rol1-2 mutant, PIN2 shows a flavonol-induced basal-to-apical shift in polar localization which is reversed in the rol1-2 rcn1-3 to basal localization. In vivo analysis of PINOID action, a kinase known to influence PIN protein localization in a PP2A-antagonistic manner, revealed a negative impact of flavonols on PINOID activity. Together, these data suggest that flavonols affect auxin transport by modifying the antagonistic kinase/phosphatase equilibrium.","lang":"eng"}],"status":"public","publication_identifier":{"issn":["20452322"]},"publication_status":"published","acknowledgement":"European Research Council (project ERC-2011-StG-20101109-PSDP), European Social Fund (CZ.1.07/2.3.00/20.0043) and the Czech Science Foundation (GA13-40637S) [JF].","day":"06","ec_funded":1,"isi":1,"month":"02","project":[{"_id":"25716A02-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Polarity and subcellular dynamics in plants","grant_number":"282300"}],"title":"Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity","date_published":"2017-02-06T00:00:00Z","quality_controlled":"1","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"year":"2017","publication":"Scientific Reports","article_processing_charge":"No","volume":7,"ddc":["581"],"date_created":"2018-12-11T11:50:12Z","external_id":{"isi":["000393367600001"]},"file_date_updated":"2018-12-12T10:18:09Z","scopus_import":"1","_id":"1110","oa_version":"Published Version","date_updated":"2025-05-07T11:12:29Z","file":[{"creator":"system","relation":"main_file","content_type":"application/pdf","date_updated":"2018-12-12T10:18:09Z","file_size":1654496,"file_name":"IST-2017-803-v1+1_srep41906.pdf","file_id":"5328","date_created":"2018-12-12T10:18:09Z","access_level":"open_access"}],"department":[{"_id":"JiFr"}],"citation":{"ista":"Kuhn B, Nodzyński T, Errafi S, Bucher R, Gupta S, Aryal B, Dobrev P, Bigler L, Geisler M, Zažímalová E, Friml J, Ringli C. 2017. Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. Scientific Reports. 7, 41906.","apa":"Kuhn, B., Nodzyński, T., Errafi, S., Bucher, R., Gupta, S., Aryal, B., … Ringli, C. (2017). Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. <i>Scientific Reports</i>. Nature Publishing Group. <a href=\"https://doi.org/10.1038/srep41906\">https://doi.org/10.1038/srep41906</a>","mla":"Kuhn, Benjamin, et al. “Flavonol-Induced Changes in PIN2 Polarity and Auxin Transport in the Arabidopsis Thaliana Rol1-2 Mutant Require Phosphatase Activity.” <i>Scientific Reports</i>, vol. 7, 41906, Nature Publishing Group, 2017, doi:<a href=\"https://doi.org/10.1038/srep41906\">10.1038/srep41906</a>.","ieee":"B. Kuhn <i>et al.</i>, “Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity,” <i>Scientific Reports</i>, vol. 7. Nature Publishing Group, 2017.","ama":"Kuhn B, Nodzyński T, Errafi S, et al. Flavonol-induced changes in PIN2 polarity and auxin transport in the Arabidopsis thaliana rol1-2 mutant require phosphatase activity. <i>Scientific Reports</i>. 2017;7. doi:<a href=\"https://doi.org/10.1038/srep41906\">10.1038/srep41906</a>","short":"B. Kuhn, T. Nodzyński, S. Errafi, R. Bucher, S. Gupta, B. Aryal, P. Dobrev, L. Bigler, M. Geisler, E. Zažímalová, J. Friml, C. Ringli, Scientific Reports 7 (2017).","chicago":"Kuhn, Benjamin, Tomasz Nodzyński, Sanae Errafi, Rahel Bucher, Shibu Gupta, Bibek Aryal, Petre Dobrev, et al. “Flavonol-Induced Changes in PIN2 Polarity and Auxin Transport in the Arabidopsis Thaliana Rol1-2 Mutant Require Phosphatase Activity.” <i>Scientific Reports</i>. Nature Publishing Group, 2017. <a href=\"https://doi.org/10.1038/srep41906\">https://doi.org/10.1038/srep41906</a>."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","has_accepted_license":"1","author":[{"last_name":"Kuhn","first_name":"Benjamin","full_name":"Kuhn, Benjamin"},{"last_name":"Nodzyński","first_name":"Tomasz","full_name":"Nodzyński, Tomasz"},{"last_name":"Errafi","first_name":"Sanae","full_name":"Errafi, Sanae"},{"last_name":"Bucher","full_name":"Bucher, Rahel","first_name":"Rahel"},{"last_name":"Gupta","first_name":"Shibu","full_name":"Gupta, Shibu"},{"first_name":"Bibek","full_name":"Aryal, Bibek","last_name":"Aryal"},{"first_name":"Petre","full_name":"Dobrev, Petre","last_name":"Dobrev"},{"first_name":"Laurent","full_name":"Bigler, Laurent","last_name":"Bigler"},{"last_name":"Geisler","full_name":"Geisler, Markus","first_name":"Markus"},{"last_name":"Zažímalová","full_name":"Zažímalová, Eva","first_name":"Eva"},{"first_name":"Jirí","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","last_name":"Friml"},{"first_name":"Christoph","full_name":"Ringli, Christoph","last_name":"Ringli"}],"oa":1,"pubrep_id":"803","type":"journal_article"},{"abstract":[{"lang":"eng","text":"Adaptation depends critically on the effects of new mutations and their dependency on the genetic background in which they occur. These two factors can be summarized by the fitness landscape. However, it would require testing all mutations in all backgrounds, making the definition and analysis of fitness landscapes mostly inaccessible. Instead of postulating a particular fitness landscape, we address this problem by considering general classes of landscapes and calculating an upper limit for the time it takes for a population to reach a fitness peak, circumventing the need to have full knowledge about the fitness landscape. We analyze populations in the weak-mutation regime and characterize the conditions that enable them to quickly reach the fitness peak as a function of the number of sites under selection. We show that for additive landscapes there is a critical selection strength enabling populations to reach high-fitness genotypes, regardless of the distribution of effects. This threshold scales with the number of sites under selection, effectively setting a limit to adaptation, and results from the inevitable increase in deleterious mutational pressure as the population adapts in a space of discrete genotypes. Furthermore, we show that for the class of all unimodal landscapes this condition is sufficient but not necessary for rapid adaptation, as in some highly epistatic landscapes the critical strength does not depend on the number of sites under selection; effectively removing this barrier to adaptation."}],"publist_id":"6256","doi":"10.1534/genetics.116.189340","issue":"2","publication_identifier":{"issn":["00166731"]},"pmid":1,"status":"public","ec_funded":1,"day":"01","publication_status":"published","month":"02","isi":1,"publisher":"Genetics Society of America","language":[{"iso":"eng"}],"page":"803 - 825","article_type":"original","intvolume":"       205","scopus_import":"1","external_id":{"isi":["000394144900025"],"pmid":["27881471"]},"_id":"1111","author":[{"last_name":"Heredia","first_name":"Jorge","full_name":"Heredia, Jorge"},{"full_name":"Trubenova, Barbora","first_name":"Barbora","id":"42302D54-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6873-2967","last_name":"Trubenova"},{"first_name":"Dirk","full_name":"Sudholt, Dirk","last_name":"Sudholt"},{"last_name":"Paixao","first_name":"Tiago","full_name":"Paixao, Tiago","id":"2C5658E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2361-3953"}],"oa":1,"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ieee":"J. Heredia, B. Trubenova, D. Sudholt, and T. Paixao, “Selection limits to adaptive walks on correlated landscapes,” <i>Genetics</i>, vol. 205, no. 2. Genetics Society of America, pp. 803–825, 2017.","chicago":"Heredia, Jorge, Barbora Trubenova, Dirk Sudholt, and Tiago Paixao. “Selection Limits to Adaptive Walks on Correlated Landscapes.” <i>Genetics</i>. Genetics Society of America, 2017. <a href=\"https://doi.org/10.1534/genetics.116.189340\">https://doi.org/10.1534/genetics.116.189340</a>.","short":"J. Heredia, B. Trubenova, D. Sudholt, T. Paixao, Genetics 205 (2017) 803–825.","ama":"Heredia J, Trubenova B, Sudholt D, Paixao T. Selection limits to adaptive walks on correlated landscapes. <i>Genetics</i>. 2017;205(2):803-825. doi:<a href=\"https://doi.org/10.1534/genetics.116.189340\">10.1534/genetics.116.189340</a>","mla":"Heredia, Jorge, et al. “Selection Limits to Adaptive Walks on Correlated Landscapes.” <i>Genetics</i>, vol. 205, no. 2, Genetics Society of America, 2017, pp. 803–25, doi:<a href=\"https://doi.org/10.1534/genetics.116.189340\">10.1534/genetics.116.189340</a>.","apa":"Heredia, J., Trubenova, B., Sudholt, D., &#38; Paixao, T. (2017). Selection limits to adaptive walks on correlated landscapes. <i>Genetics</i>. Genetics Society of America. <a href=\"https://doi.org/10.1534/genetics.116.189340\">https://doi.org/10.1534/genetics.116.189340</a>","ista":"Heredia J, Trubenova B, Sudholt D, Paixao T. 2017. Selection limits to adaptive walks on correlated landscapes. Genetics. 205(2), 803–825."},"department":[{"_id":"NiBa"}],"oa_version":"Published Version","date_updated":"2023-09-20T11:35:03Z","type":"journal_article","quality_controlled":"1","date_published":"2017-02-01T00:00:00Z","title":"Selection limits to adaptive walks on correlated landscapes","project":[{"_id":"25B1EC9E-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Speed of Adaptation in Population Genetics and Evolutionary Computation","grant_number":"618091"}],"volume":205,"article_processing_charge":"No","publication":"Genetics","year":"2017","main_file_link":[{"url":"https://doi.org/10.1534/genetics.116.189340","open_access":"1"}],"date_created":"2018-12-11T11:50:12Z"},{"date_created":"2018-12-11T11:50:12Z","page":"3 - 11","year":"2017","language":[{"iso":"eng"}],"publication":"Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms","conference":{"location":"Copenhagen, Denmark","start_date":"2017-01-12","end_date":"2017-01-15","name":"FOGA: Foundations of Genetic Algorithms"},"publisher":"ACM","date_published":"2017-01-12T00:00:00Z","title":"An application of stochastic differential equations to evolutionary algorithms","quality_controlled":"1","month":"01","type":"conference","department":[{"_id":"NiBa"}],"publication_status":"published","date_updated":"2021-01-12T06:48:22Z","oa_version":"None","author":[{"orcid":"0000-0003-2361-3953","full_name":"Paixao, Tiago","first_name":"Tiago","id":"2C5658E6-F248-11E8-B48F-1D18A9856A87","last_name":"Paixao"},{"last_name":"Pérez Heredia","full_name":"Pérez Heredia, Jorge","first_name":"Jorge"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Paixao, Tiago, and Jorge Pérez Heredia. “An Application of Stochastic Differential Equations to Evolutionary Algorithms.” In <i>Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms</i>, 3–11. ACM, 2017. <a href=\"https://doi.org/10.1145/3040718.3040729\">https://doi.org/10.1145/3040718.3040729</a>.","ama":"Paixao T, Pérez Heredia J. An application of stochastic differential equations to evolutionary algorithms. In: <i>Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms</i>. ACM; 2017:3-11. doi:<a href=\"https://doi.org/10.1145/3040718.3040729\">10.1145/3040718.3040729</a>","short":"T. Paixao, J. Pérez Heredia, in:, Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, ACM, 2017, pp. 3–11.","ieee":"T. Paixao and J. Pérez Heredia, “An application of stochastic differential equations to evolutionary algorithms,” in <i>Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms</i>, Copenhagen, Denmark, 2017, pp. 3–11.","apa":"Paixao, T., &#38; Pérez Heredia, J. (2017). An application of stochastic differential equations to evolutionary algorithms. In <i>Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms</i> (pp. 3–11). Copenhagen, Denmark: ACM. <a href=\"https://doi.org/10.1145/3040718.3040729\">https://doi.org/10.1145/3040718.3040729</a>","mla":"Paixao, Tiago, and Jorge Pérez Heredia. “An Application of Stochastic Differential Equations to Evolutionary Algorithms.” <i>Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms</i>, ACM, 2017, pp. 3–11, doi:<a href=\"https://doi.org/10.1145/3040718.3040729\">10.1145/3040718.3040729</a>.","ista":"Paixao T, Pérez Heredia J. 2017. An application of stochastic differential equations to evolutionary algorithms. Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms. FOGA: Foundations of Genetic Algorithms, 3–11."},"day":"12","_id":"1112","status":"public","publication_identifier":{"isbn":["978-145034651-1"]},"scopus_import":1,"abstract":[{"lang":"eng","text":"There has been renewed interest in modelling the behaviour of evolutionary algorithms by more traditional mathematical objects, such as ordinary differential equations or Markov chains. The advantage is that the analysis becomes greatly facilitated due to the existence of well established methods. However, this typically comes at the cost of disregarding information about the process. Here, we introduce the use of stochastic differential equations (SDEs) for the study of EAs. SDEs can produce simple analytical results for the dynamics of stochastic processes, unlike Markov chains which can produce rigorous but unwieldy expressions about the dynamics. On the other hand, unlike ordinary differential equations (ODEs), they do not discard information about the stochasticity of the process. We show that these are especially suitable for the analysis of fixed budget scenarios and present analogs of the additive and multiplicative drift theorems for SDEs. We exemplify the use of these methods for two model algorithms ((1+1) EA and RLS) on two canonical problems(OneMax and LeadingOnes)."}],"doi":"10.1145/3040718.3040729","publist_id":"6255"},{"year":"2017","article_processing_charge":"No","volume":21,"publication":"Journal of Graph Algorithms and Applications","date_created":"2018-12-11T11:50:13Z","ddc":["510"],"title":"Hanani-Tutte for radial planarity","date_published":"2017-01-01T00:00:00Z","project":[{"grant_number":"291734","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","department":[{"_id":"UlWa"}],"file":[{"relation":"main_file","creator":"dernst","access_level":"open_access","file_id":"6967","success":1,"date_created":"2019-10-24T10:54:37Z","file_name":"2017_JournalGraphAlgorithms_Fulek.pdf","date_updated":"2019-10-24T10:54:37Z","content_type":"application/pdf","file_size":573623}],"date_updated":"2023-02-23T10:05:57Z","oa_version":"Published Version","author":[{"orcid":"0000-0001-8485-1774","full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav","last_name":"Fulek"},{"full_name":"Pelsmajer, Michael","first_name":"Michael","last_name":"Pelsmajer"},{"first_name":"Marcus","full_name":"Schaefer, Marcus","last_name":"Schaefer"}],"oa":1,"citation":{"ista":"Fulek R, Pelsmajer M, Schaefer M. 2017. Hanani-Tutte for radial planarity. Journal of Graph Algorithms and Applications. 21(1), 135–154.","apa":"Fulek, R., Pelsmajer, M., &#38; Schaefer, M. (2017). Hanani-Tutte for radial planarity. <i>Journal of Graph Algorithms and Applications</i>. Brown University. <a href=\"https://doi.org/10.7155/jgaa.00408\">https://doi.org/10.7155/jgaa.00408</a>","mla":"Fulek, Radoslav, et al. “Hanani-Tutte for Radial Planarity.” <i>Journal of Graph Algorithms and Applications</i>, vol. 21, no. 1, Brown University, 2017, pp. 135–54, doi:<a href=\"https://doi.org/10.7155/jgaa.00408\">10.7155/jgaa.00408</a>.","ieee":"R. Fulek, M. Pelsmajer, and M. Schaefer, “Hanani-Tutte for radial planarity,” <i>Journal of Graph Algorithms and Applications</i>, vol. 21, no. 1. Brown University, pp. 135–154, 2017.","short":"R. Fulek, M. Pelsmajer, M. Schaefer, Journal of Graph Algorithms and Applications 21 (2017) 135–154.","ama":"Fulek R, Pelsmajer M, Schaefer M. Hanani-Tutte for radial planarity. <i>Journal of Graph Algorithms and Applications</i>. 2017;21(1):135-154. doi:<a href=\"https://doi.org/10.7155/jgaa.00408\">10.7155/jgaa.00408</a>","chicago":"Fulek, Radoslav, Michael Pelsmajer, and Marcus Schaefer. “Hanani-Tutte for Radial Planarity.” <i>Journal of Graph Algorithms and Applications</i>. Brown University, 2017. <a href=\"https://doi.org/10.7155/jgaa.00408\">https://doi.org/10.7155/jgaa.00408</a>."},"has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","type":"journal_article","external_id":{"arxiv":["1608.08662"]},"scopus_import":1,"file_date_updated":"2019-10-24T10:54:37Z","_id":"1113","arxiv":1,"language":[{"iso":"eng"}],"intvolume":"        21","page":"135 - 154","article_type":"original","publisher":"Brown University","publication_status":"published","ec_funded":1,"day":"01","related_material":{"record":[{"id":"1164","relation":"earlier_version","status":"public"},{"status":"public","id":"1595","relation":"earlier_version"}]},"month":"01","issue":"1","doi":"10.7155/jgaa.00408","publist_id":"6254","abstract":[{"lang":"eng","text":"A drawing of a graph G is radial if the vertices of G are placed on concentric circles C 1 , . . . , C k with common center c , and edges are drawn radially : every edge intersects every circle centered at c at most once. G is radial planar if it has a radial embedding, that is, a crossing-free radial drawing. If the vertices of G are ordered or partitioned into ordered levels (as they are for leveled graphs), we require that the assignment of vertices to circles corresponds to the given ordering or leveling. We show that a graph G is radial planar if G has a radial drawing in which every two edges cross an even number of times; the radial embedding has the same leveling as the radial drawing. In other words, we establish the weak variant of the Hanani-Tutte theorem for radial planarity. This generalizes a result by Pach and Toth."}],"status":"public"},{"intvolume":"         7","article_number":"011012","language":[{"iso":"eng"}],"publisher":"American Physical Society","month":"01","isi":1,"publication_status":"published","day":"31","status":"public","publication_identifier":{"issn":["21603308"]},"issue":"1","publist_id":"6252","abstract":[{"lang":"eng","text":"Nonequilibrium phase transitions exist in damped-driven open quantum systems when the continuous tuning of an external parameter leads to a transition between two robust steady states. In second-order transitions this change is abrupt at a critical point, whereas in first-order transitions the two phases can coexist in a critical hysteresis domain. Here, we report the observation of a first-order dissipative quantum phase transition in a driven circuit quantum electrodynamics system. It takes place when the photon blockade of the driven cavity-atom system is broken by increasing the drive power. The observed experimental signature is a bimodal phase space distribution with varying weights controlled by the drive strength. Our measurements show an improved stabilization of the classical attractors up to the millisecond range when the size of the quantum system is increased from one to three artificial atoms. The formation of such robust pointer states could be used for new quantum measurement schemes or to investigate multiphoton phases of finite-size, nonlinear, open quantum systems."}],"doi":"10.1103/PhysRevX.7.011012","date_created":"2018-12-11T11:50:13Z","ddc":["539"],"year":"2017","article_processing_charge":"Yes","volume":7,"publication":"Physical Review X","tmp":{"image":"/images/cc_by.png","short":"CC BY (4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"title":"Observation of the photon blockade breakdown phase transition","date_published":"2017-01-31T00:00:00Z","quality_controlled":"1","pubrep_id":"753","type":"journal_article","department":[{"_id":"JoFi"}],"file":[{"relation":"main_file","creator":"system","file_name":"IST-2017-753-v1+1_PhysRevX.7.011012.pdf","date_updated":"2018-12-12T10:12:52Z","content_type":"application/pdf","file_size":1172926,"access_level":"open_access","file_id":"4972","date_created":"2018-12-12T10:12:52Z"}],"oa_version":"Published Version","date_updated":"2023-09-20T11:33:07Z","oa":1,"author":[{"last_name":"Fink","first_name":"Johannes M","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M","orcid":"0000-0001-8112-028X"},{"first_name":"András","full_name":"Dombi, András","last_name":"Dombi"},{"last_name":"Vukics","first_name":"András","full_name":"Vukics, András"},{"last_name":"Wallraff","full_name":"Wallraff, Andreas","first_name":"Andreas"},{"last_name":"Domokos","first_name":"Peter","full_name":"Domokos, Peter"}],"citation":{"chicago":"Fink, Johannes M, András Dombi, András Vukics, Andreas Wallraff, and Peter Domokos. “Observation of the Photon Blockade Breakdown Phase Transition.” <i>Physical Review X</i>. American Physical Society, 2017. <a href=\"https://doi.org/10.1103/PhysRevX.7.011012\">https://doi.org/10.1103/PhysRevX.7.011012</a>.","short":"J.M. Fink, A. Dombi, A. Vukics, A. Wallraff, P. Domokos, Physical Review X 7 (2017).","ama":"Fink JM, Dombi A, Vukics A, Wallraff A, Domokos P. Observation of the photon blockade breakdown phase transition. <i>Physical Review X</i>. 2017;7(1). doi:<a href=\"https://doi.org/10.1103/PhysRevX.7.011012\">10.1103/PhysRevX.7.011012</a>","ieee":"J. M. Fink, A. Dombi, A. Vukics, A. Wallraff, and P. Domokos, “Observation of the photon blockade breakdown phase transition,” <i>Physical Review X</i>, vol. 7, no. 1. American Physical Society, 2017.","apa":"Fink, J. M., Dombi, A., Vukics, A., Wallraff, A., &#38; Domokos, P. (2017). Observation of the photon blockade breakdown phase transition. <i>Physical Review X</i>. American Physical Society. <a href=\"https://doi.org/10.1103/PhysRevX.7.011012\">https://doi.org/10.1103/PhysRevX.7.011012</a>","mla":"Fink, Johannes M., et al. “Observation of the Photon Blockade Breakdown Phase Transition.” <i>Physical Review X</i>, vol. 7, no. 1, 011012, American Physical Society, 2017, doi:<a href=\"https://doi.org/10.1103/PhysRevX.7.011012\">10.1103/PhysRevX.7.011012</a>.","ista":"Fink JM, Dombi A, Vukics A, Wallraff A, Domokos P. 2017. Observation of the photon blockade breakdown phase transition. Physical Review X. 7(1), 011012."},"has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"1114","external_id":{"isi":["000397450500001"]},"scopus_import":"1","file_date_updated":"2018-12-12T10:12:52Z"},{"month":"03","isi":1,"alternative_title":["LNCS"],"day":"31","publication_status":"published","publication_identifier":{"issn":["03029743"]},"status":"public","publist_id":"6246","doi":"10.1007/978-3-662-54580-5_10","abstract":[{"lang":"eng","text":"Time-triggered switched networks are a deterministic communication infrastructure used by real-time distributed embedded systems. Due to the criticality of the applications running over them, developers need to ensure that end-to-end communication is dependable and predictable. Traditional approaches assume static networks that are not flexible to changes caused by reconfigurations or, more importantly, faults, which are dealt with in the application using redundancy. We adopt the concept of handling faults in the switches from non-real-time networks while maintaining the required predictability. \r\n\r\nWe study a class of forwarding schemes that can handle various types of failures. We consider probabilistic failures. We study a class of forwarding schemes that can handle various types of failures. We consider probabilistic failures. For a given network with a forwarding scheme and a constant ℓ, we compute the {\\em score} of the scheme, namely the probability (induced by faults) that at least ℓ messages arrive on time. We reduce the scoring problem to a reachability problem on a Markov chain with a &quot;product-like&quot; structure. Its special structure allows us to reason about it symbolically, and reduce the scoring problem to #SAT. Our solution is generic and can be adapted to different networks and other contexts. Also, we show the computational complexity of the scoring problem is #P-complete, and we study methods to estimate the score. We evaluate the effectiveness of our techniques with an implementation. "}],"page":"169 - 187","intvolume":"     10206","language":[{"iso":"eng"}],"publisher":"Springer","type":"conference","pubrep_id":"758","oa":1,"author":[{"last_name":"Avni","full_name":"Avni, Guy","first_name":"Guy","id":"463C8BC2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5588-8287"},{"first_name":"Shubham","full_name":"Goel, Shubham","last_name":"Goel"},{"orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A","last_name":"Henzinger"},{"full_name":"Rodríguez Navas, Guillermo","first_name":"Guillermo","last_name":"Rodríguez Navas"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","has_accepted_license":"1","citation":{"chicago":"Avni, Guy, Shubham Goel, Thomas A Henzinger, and Guillermo Rodríguez Navas. “Computing Scores of Forwarding Schemes in Switched Networks with Probabilistic Faults,” 10206:169–87. Springer, 2017. <a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">https://doi.org/10.1007/978-3-662-54580-5_10</a>.","ama":"Avni G, Goel S, Henzinger TA, Rodríguez Navas G. Computing scores of forwarding schemes in switched networks with probabilistic faults. In: Vol 10206. Springer; 2017:169-187. doi:<a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">10.1007/978-3-662-54580-5_10</a>","short":"G. Avni, S. Goel, T.A. Henzinger, G. Rodríguez Navas, in:, Springer, 2017, pp. 169–187.","ieee":"G. Avni, S. Goel, T. A. Henzinger, and G. Rodríguez Navas, “Computing scores of forwarding schemes in switched networks with probabilistic faults,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Uppsala, Sweden, 2017, vol. 10206, pp. 169–187.","mla":"Avni, Guy, et al. <i>Computing Scores of Forwarding Schemes in Switched Networks with Probabilistic Faults</i>. Vol. 10206, Springer, 2017, pp. 169–87, doi:<a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">10.1007/978-3-662-54580-5_10</a>.","apa":"Avni, G., Goel, S., Henzinger, T. A., &#38; Rodríguez Navas, G. (2017). Computing scores of forwarding schemes in switched networks with probabilistic faults (Vol. 10206, pp. 169–187). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Uppsala, Sweden: Springer. <a href=\"https://doi.org/10.1007/978-3-662-54580-5_10\">https://doi.org/10.1007/978-3-662-54580-5_10</a>","ista":"Avni G, Goel S, Henzinger TA, Rodríguez Navas G. 2017. Computing scores of forwarding schemes in switched networks with probabilistic faults. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 10206, 169–187."},"department":[{"_id":"ToHe"}],"file":[{"file_name":"IST-2017-758-v1+1_tacas-cr.pdf","file_size":321800,"date_updated":"2018-12-12T10:08:37Z","content_type":"application/pdf","access_level":"open_access","date_created":"2018-12-12T10:08:37Z","file_id":"4698","relation":"main_file","creator":"system"}],"oa_version":"Submitted Version","date_updated":"2023-09-20T11:32:43Z","_id":"1116","scopus_import":"1","file_date_updated":"2018-12-12T10:08:37Z","external_id":{"isi":["000440733400010"]},"date_created":"2018-12-11T11:50:14Z","ddc":["000"],"volume":10206,"article_processing_charge":"No","year":"2017","conference":{"name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems","end_date":"2017-04-29","start_date":"2017-04-22","location":"Uppsala, Sweden"},"quality_controlled":"1","title":"Computing scores of forwarding schemes in switched networks with probabilistic faults","date_published":"2017-03-31T00:00:00Z","project":[{"grant_number":"S11402-N23","name":"Moderne Concurrency Paradigms","_id":"25F5A88A-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"The Wittgenstein Prize","grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}]}]