[{"degree_awarded":"PhD","doi":"10.15479/AT:ISTA:7196","day":"12","abstract":[{"lang":"eng","text":"In this thesis we study certain mathematical aspects of evolution. The two primary forces that drive an evolutionary process are mutation and selection. Mutation generates new variants in a population. Selection chooses among the variants depending on the reproductive rates of individuals. Evolutionary processes are intrinsically random – a new mutation that is initially present in the population at low frequency can go extinct, even if it confers a reproductive advantage. The overall rate of evolution is largely determined by two quantities: the probability that an invading advantageous mutation spreads through the population (called fixation probability) and the time until it does so (called fixation time). Both those quantities crucially depend not only on the strength of the invading mutation but also on the population structure. In this thesis, we aim to understand how the underlying population structure affects the overall rate of evolution. Specifically, we study population structures that increase the fixation probability of advantageous mutants (called amplifiers of selection). Broadly speaking, our results are of three different types: We present various strong amplifiers, we identify regimes under which only limited amplification is feasible, and we propose population structures that provide different tradeoffs between high fixation probability and short fixation time."}],"date_updated":"2023-10-17T12:29:46Z","citation":{"apa":"Tkadlec, J. (2020). <i>A role of graphs in evolutionary processes</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7196\">https://doi.org/10.15479/AT:ISTA:7196</a>","ama":"Tkadlec J. A role of graphs in evolutionary processes. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7196\">10.15479/AT:ISTA:7196</a>","chicago":"Tkadlec, Josef. “A Role of Graphs in Evolutionary Processes.” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7196\">https://doi.org/10.15479/AT:ISTA:7196</a>.","ieee":"J. Tkadlec, “A role of graphs in evolutionary processes,” Institute of Science and Technology Austria, 2020.","short":"J. Tkadlec, A Role of Graphs in Evolutionary Processes, Institute of Science and Technology Austria, 2020.","mla":"Tkadlec, Josef. <i>A Role of Graphs in Evolutionary Processes</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7196\">10.15479/AT:ISTA:7196</a>.","ista":"Tkadlec J. 2020. A role of graphs in evolutionary processes. Institute of Science and Technology Austria."},"year":"2020","ddc":["519"],"publication_status":"published","date_created":"2019-12-20T12:26:36Z","department":[{"_id":"KrCh"},{"_id":"GradSch"}],"article_processing_charge":"No","alternative_title":["ISTA Thesis"],"title":"A role of graphs in evolutionary processes","_id":"7196","author":[{"full_name":"Tkadlec, Josef","orcid":"0000-0002-1097-9684","last_name":"Tkadlec","first_name":"Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Institute of Science and Technology Austria","page":"144","file_date_updated":"2020-07-14T12:47:52Z","publication_identifier":{"eissn":["2663-337X"]},"supervisor":[{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","last_name":"Chatterjee","first_name":"Krishnendu"}],"oa":1,"date_published":"2020-01-12T00:00:00Z","type":"dissertation","file":[{"creator":"jtkadlec","file_id":"7255","relation":"source_file","access_level":"closed","file_name":"thesis.zip","content_type":"application/zip","date_updated":"2020-07-14T12:47:52Z","checksum":"451f8e64b0eb26bf297644ac72bfcbe9","file_size":21100497,"date_created":"2020-01-12T11:49:49Z"},{"relation":"main_file","access_level":"open_access","file_id":"7367","creator":"dernst","date_created":"2020-01-28T07:32:42Z","checksum":"d8c44cbc4f939c49a8efc9d4b8bb3985","file_size":11670983,"date_updated":"2020-07-14T12:47:52Z","file_name":"2020_Tkadlec_Thesis.pdf","content_type":"application/pdf"}],"related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"7210"},{"relation":"dissertation_contains","id":"5751","status":"public"},{"id":"7212","relation":"dissertation_contains","status":"public"}]},"status":"public","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Published Version","month":"01","has_accepted_license":"1","language":[{"iso":"eng"}]},{"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"file_size":3586924,"checksum":"016eeab5860860af038e2da95ffe75c3","date_created":"2020-02-24T14:29:54Z","content_type":"application/pdf","file_name":"2020_AdvScience_Li.pdf","date_updated":"2020-07-14T12:47:53Z","relation":"main_file","access_level":"open_access","creator":"dernst","file_id":"7519"}],"oa":1,"publication_identifier":{"eissn":["2198-3844"]},"date_published":"2020-02-05T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"language":[{"iso":"eng"}],"month":"02","article_number":"1901455","oa_version":"Published Version","publication":"Advanced Science","has_accepted_license":"1","ddc":["580"],"volume":7,"abstract":[{"lang":"eng","text":"Plant root architecture dynamically adapts to various environmental conditions, such as salt‐containing soil. The phytohormone abscisic acid (ABA) is involved among others also in these developmental adaptations, but the underlying molecular mechanism remains elusive. Here, a novel branch of the ABA signaling pathway in Arabidopsis involving PYR/PYL/RCAR (abbreviated as PYLs) receptor‐protein phosphatase 2A (PP2A) complex that acts in parallel to the canonical PYLs‐protein phosphatase 2C (PP2C) mechanism is identified. The PYLs‐PP2A signaling modulates root gravitropism and lateral root formation through regulating phytohormone auxin transport. In optimal conditions, PYLs ABA receptor interacts with the catalytic subunits of PP2A, increasing their phosphatase activity and thus counteracting PINOID (PID) kinase‐mediated phosphorylation of PIN‐FORMED (PIN) auxin transporters. By contrast, in salt and osmotic stress conditions, ABA binds to PYLs, inhibiting the PP2A activity, which leads to increased PIN phosphorylation and consequently modulated directional auxin transport leading to adapted root architecture. This work reveals an adaptive mechanism that may flexibly adjust plant root growth to withstand saline and osmotic stresses. It occurs via the cross‐talk between the stress hormone ABA and the versatile developmental regulator auxin."}],"doi":"10.1002/advs.201901455","day":"05","isi":1,"external_id":{"isi":["000501912800001"],"pmid":["32042554"]},"date_updated":"2023-08-17T14:13:17Z","citation":{"ama":"Li Y, Wang Y, Tan S, et al. Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. <i>Advanced Science</i>. 2020;7(3). doi:<a href=\"https://doi.org/10.1002/advs.201901455\">10.1002/advs.201901455</a>","apa":"Li, Y., Wang, Y., Tan, S., Li, Z., Yuan, Z., Glanc, M., … Zhang, J. (2020). Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. <i>Advanced Science</i>. Wiley. <a href=\"https://doi.org/10.1002/advs.201901455\">https://doi.org/10.1002/advs.201901455</a>","ieee":"Y. Li <i>et al.</i>, “Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex,” <i>Advanced Science</i>, vol. 7, no. 3. Wiley, 2020.","chicago":"Li, Yang, Yaping Wang, Shutang Tan, Zhen Li, Zhi Yuan, Matous Glanc, David Domjan, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A Protein Phosphatase Complex.” <i>Advanced Science</i>. Wiley, 2020. <a href=\"https://doi.org/10.1002/advs.201901455\">https://doi.org/10.1002/advs.201901455</a>.","short":"Y. Li, Y. Wang, S. Tan, Z. Li, Z. Yuan, M. Glanc, D. Domjan, K. Wang, W. Xuan, Y. Guo, Z. Gong, J. Friml, J. Zhang, Advanced Science 7 (2020).","mla":"Li, Yang, et al. “Root Growth Adaptation Is Mediated by PYLs ABA Receptor-PP2A Protein Phosphatase Complex.” <i>Advanced Science</i>, vol. 7, no. 3, 1901455, Wiley, 2020, doi:<a href=\"https://doi.org/10.1002/advs.201901455\">10.1002/advs.201901455</a>.","ista":"Li Y, Wang Y, Tan S, Li Z, Yuan Z, Glanc M, Domjan D, Wang K, Xuan W, Guo Y, Gong Z, Friml J, Zhang J. 2020. Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex. Advanced Science. 7(3), 1901455."},"year":"2020","article_type":"original","publisher":"Wiley","file_date_updated":"2020-07-14T12:47:53Z","quality_controlled":"1","title":"Root growth adaptation is mediated by PYLs ABA receptor-PP2A protein phosphatase complex","intvolume":"         7","publication_status":"published","department":[{"_id":"JiFr"}],"date_created":"2019-12-22T23:00:43Z","article_processing_charge":"No","author":[{"full_name":"Li, Yang","last_name":"Li","first_name":"Yang"},{"full_name":"Wang, Yaping","last_name":"Wang","first_name":"Yaping"},{"orcid":"0000-0002-0471-8285","full_name":"Tan, Shutang","first_name":"Shutang","last_name":"Tan","id":"2DE75584-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Zhen","last_name":"Li","full_name":"Li, Zhen"},{"full_name":"Yuan, Zhi","last_name":"Yuan","first_name":"Zhi"},{"id":"1AE1EA24-02D0-11E9-9BAA-DAF4881429F2","full_name":"Glanc, Matous","orcid":"0000-0003-0619-7783","last_name":"Glanc","first_name":"Matous"},{"last_name":"Domjan","first_name":"David","full_name":"Domjan, David","orcid":"0000-0003-2267-106X","id":"C684CD7A-257E-11EA-9B6F-D8588B4F947F"},{"full_name":"Wang, Kai","last_name":"Wang","first_name":"Kai"},{"last_name":"Xuan","first_name":"Wei","full_name":"Xuan, Wei"},{"last_name":"Guo","first_name":"Yan","full_name":"Guo, Yan"},{"first_name":"Zhizhong","last_name":"Gong","full_name":"Gong, Zhizhong"},{"id":"4159519E-F248-11E8-B48F-1D18A9856A87","full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","last_name":"Friml","first_name":"Jiří"},{"full_name":"Zhang, Jing","first_name":"Jing","last_name":"Zhang"}],"issue":"3","_id":"7204","pmid":1,"scopus_import":"1"},{"status":"public","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"record":[{"status":"public","relation":"research_data","id":"13067"}]},"file":[{"success":1,"access_level":"open_access","relation":"main_file","creator":"dernst","file_id":"8553","checksum":"7534ff0839709c0c5265c12d29432f03","file_size":885611,"date_created":"2020-09-22T09:42:18Z","file_name":"2020_EvolBiology_Johannesson.pdf","content_type":"application/pdf","date_updated":"2020-09-22T09:42:18Z"}],"type":"journal_article","date_published":"2020-03-01T00:00:00Z","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"publication_identifier":{"eissn":["14209101"],"issn":["1010061X"]},"language":[{"iso":"eng"}],"has_accepted_license":"1","publication":"Journal of Evolutionary Biology","month":"03","oa_version":"Published Version","ddc":["570"],"volume":33,"external_id":{"isi":["000500954800001"],"pmid":["31724256"]},"isi":1,"citation":{"ieee":"K. Johannesson, Z. Zagrodzka, R. Faria, A. M. Westram, and R. K. Butlin, “Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?,” <i>Journal of Evolutionary Biology</i>, vol. 33, no. 3. Wiley, pp. 342–351, 2020.","chicago":"Johannesson, Kerstin, Zuzanna Zagrodzka, Rui Faria, Anja M Westram, and Roger K. Butlin. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between Littorina Ecotypes?” <i>Journal of Evolutionary Biology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/jeb.13570\">https://doi.org/10.1111/jeb.13570</a>.","ama":"Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? <i>Journal of Evolutionary Biology</i>. 2020;33(3):342-351. doi:<a href=\"https://doi.org/10.1111/jeb.13570\">10.1111/jeb.13570</a>","apa":"Johannesson, K., Zagrodzka, Z., Faria, R., Westram, A. M., &#38; Butlin, R. K. (2020). Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? <i>Journal of Evolutionary Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/jeb.13570\">https://doi.org/10.1111/jeb.13570</a>","ista":"Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. 2020. Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of Evolutionary Biology. 33(3), 342–351.","mla":"Johannesson, Kerstin, et al. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between Littorina Ecotypes?” <i>Journal of Evolutionary Biology</i>, vol. 33, no. 3, Wiley, 2020, pp. 342–51, doi:<a href=\"https://doi.org/10.1111/jeb.13570\">10.1111/jeb.13570</a>.","short":"K. Johannesson, Z. Zagrodzka, R. Faria, A.M. Westram, R.K. Butlin, Journal of Evolutionary Biology 33 (2020) 342–351."},"year":"2020","date_updated":"2023-09-06T14:48:57Z","abstract":[{"lang":"eng","text":"Genetic incompatibilities contribute to reproductive isolation between many diverging populations, but it is still unclear to what extent they play a role if divergence happens with gene flow. In contact zones between the \"Crab\" and \"Wave\" ecotypes of the snail Littorina saxatilis, divergent selection forms strong barriers to gene flow, while the role of post‐zygotic barriers due to selection against hybrids remains unclear. High embryo abortion rates in this species could indicate the presence of such barriers. Post‐zygotic barriers might include genetic incompatibilities (e.g. Dobzhansky–Muller incompatibilities) but also maladaptation, both expected to be most pronounced in contact zones. In addition, embryo abortion might reflect physiological stress on females and embryos independent of any genetic stress. We examined all embryos of >500 females sampled outside and inside contact zones of three populations in Sweden. Females' clutch size ranged from 0 to 1,011 embryos (mean 130 ± 123), and abortion rates varied between 0% and 100% (mean 12%). We described female genotypes by using a hybrid index based on hundreds of SNPs differentiated between ecotypes with which we characterized female genotypes. We also calculated female SNP heterozygosity and inversion karyotype. Clutch size did not vary with female hybrid index, and abortion rates were only weakly related to hybrid index in two sites but not at all in a third site. No additional variation in abortion rate was explained by female SNP heterozygosity, but increased female inversion heterozygosity added slightly to increased abortion. Our results show only weak and probably biologically insignificant post‐zygotic barriers contributing to ecotype divergence, and the high and variable abortion rates were marginally, if at all, explained by hybrid index of females."}],"day":"01","doi":"10.1111/jeb.13570","file_date_updated":"2020-09-22T09:42:18Z","quality_controlled":"1","page":"342-351","article_type":"original","publisher":"Wiley","issue":"3","author":[{"full_name":"Johannesson, Kerstin","first_name":"Kerstin","last_name":"Johannesson"},{"full_name":"Zagrodzka, Zuzanna","last_name":"Zagrodzka","first_name":"Zuzanna"},{"full_name":"Faria, Rui","last_name":"Faria","first_name":"Rui"},{"last_name":"Westram","first_name":"Anja M","full_name":"Westram, Anja M","orcid":"0000-0003-1050-4969","id":"3C147470-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Roger K.","last_name":"Butlin","full_name":"Butlin, Roger K."}],"scopus_import":"1","_id":"7205","pmid":1,"intvolume":"        33","title":"Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?","date_created":"2019-12-22T23:00:43Z","article_processing_charge":"No","department":[{"_id":"NiBa"}],"publication_status":"published"},{"publication_identifier":{"issn":["10156305"],"eissn":["17503639"]},"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"type":"journal_article","date_published":"2020-05-01T00:00:00Z","file":[{"file_id":"8554","creator":"dernst","success":1,"relation":"main_file","access_level":"open_access","date_updated":"2020-09-22T09:47:19Z","file_name":"2020_BrainPathology_MartinBelmonte.pdf","content_type":"application/pdf","date_created":"2020-09-22T09:47:19Z","file_size":4220935,"checksum":"549cc1b18f638a21d17a939ba5563fa9"}],"status":"public","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","project":[{"grant_number":"720270","name":"Human Brain Project Specific Grant Agreement 1 (HBP SGA 1)","call_identifier":"H2020","_id":"25CBA828-B435-11E9-9278-68D0E5697425"},{"grant_number":"785907","name":"Human Brain Project Specific Grant Agreement 2 (HBP SGA 2)","_id":"26436750-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"oa_version":"Published Version","month":"05","has_accepted_license":"1","publication":"Brain Pathology","language":[{"iso":"eng"}],"day":"01","doi":"10.1111/bpa.12802","abstract":[{"text":"The hippocampus plays key roles in learning and memory and is a main target of Alzheimer's disease (AD), which causes progressive memory impairments. Despite numerous investigations about the processes required for the normal hippocampal functions, the neurotransmitter receptors involved in the synaptic deficits by which AD disables the hippocampus are not yet characterized. By combining histoblots, western blots, immunohistochemistry and high‐resolution immunoelectron microscopic methods for GABAB receptors, this study provides a quantitative description of the expression and the subcellular localization of GABAB1 in the hippocampus in a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots showed that the total amount of protein and the laminar expression pattern of GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast, immunoelectron microscopic techniques showed that the subcellular localization of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age, was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal cells at 6 months of age and significantly reduced at the membrane surface of CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1 was paralleled by a significant increase of the subunit at the intracellular sites. We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated synaptic transmission taking place in AD.","lang":"eng"}],"year":"2020","citation":{"short":"A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto, Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575.","mla":"Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA&#62;B&#60; Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>Brain Pathology</i>, vol. 30, no. 3, Wiley, 2020, pp. 554–75, doi:<a href=\"https://doi.org/10.1111/bpa.12802\">10.1111/bpa.12802</a>.","ista":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y, Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology. 30(3), 554–575.","apa":"Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. Wiley. <a href=\"https://doi.org/10.1111/bpa.12802\">https://doi.org/10.1111/bpa.12802</a>","ama":"Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model of Alzheimer’s disease. <i>Brain Pathology</i>. 2020;30(3):554-575. doi:<a href=\"https://doi.org/10.1111/bpa.12802\">10.1111/bpa.12802</a>","chicago":"Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al. “Reduction in the Neuronal Surface of Post and Presynaptic GABA&#62;B&#60; Receptors in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” <i>Brain Pathology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/bpa.12802\">https://doi.org/10.1111/bpa.12802</a>.","ieee":"A. Martín-Belmonte <i>et al.</i>, “Reduction in the neuronal surface of post and presynaptic GABA&#62;B&#60; receptors in the hippocampus in a mouse model of Alzheimer’s disease,” <i>Brain Pathology</i>, vol. 30, no. 3. Wiley, pp. 554–575, 2020."},"date_updated":"2023-09-06T14:48:01Z","external_id":{"pmid":["31729777"],"isi":["000502270900001"]},"isi":1,"volume":30,"ddc":["570"],"department":[{"_id":"RySh"}],"date_created":"2019-12-22T23:00:43Z","article_processing_charge":"No","publication_status":"published","intvolume":"        30","title":"Reduction in the neuronal surface of post and presynaptic GABA>B< receptors in the hippocampus in a mouse model of Alzheimer's disease","scopus_import":"1","pmid":1,"_id":"7207","issue":"3","author":[{"full_name":"Martín-Belmonte, Alejandro","last_name":"Martín-Belmonte","first_name":"Alejandro"},{"last_name":"Aguado","first_name":"Carolina","full_name":"Aguado, Carolina"},{"first_name":"Rocío","last_name":"Alfaro-Ruíz","full_name":"Alfaro-Ruíz, Rocío"},{"first_name":"Ana Esther","last_name":"Moreno-Martínez","full_name":"Moreno-Martínez, Ana Esther"},{"last_name":"De La Ossa","first_name":"Luis","full_name":"De La Ossa, Luis"},{"full_name":"Martínez-Hernández, José","last_name":"Martínez-Hernández","first_name":"José"},{"full_name":"Buisson, Alain","last_name":"Buisson","first_name":"Alain"},{"full_name":"Früh, Simon","last_name":"Früh","first_name":"Simon"},{"last_name":"Bettler","first_name":"Bernhard","full_name":"Bettler, Bernhard"},{"first_name":"Ryuichi","last_name":"Shigemoto","orcid":"0000-0001-8761-9444","full_name":"Shigemoto, Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Fukazawa","first_name":"Yugo","full_name":"Fukazawa, Yugo"},{"full_name":"Luján, Rafael","first_name":"Rafael","last_name":"Luján"}],"publisher":"Wiley","article_type":"original","ec_funded":1,"quality_controlled":"1","page":"554-575","file_date_updated":"2020-09-22T09:47:19Z"},{"day":"17","arxiv":1,"doi":"10.1371/journal.pcbi.1007494","abstract":[{"lang":"eng","text":"The fixation probability of a single mutant invading a population of residents is among the most widely-studied quantities in evolutionary dynamics. Amplifiers of natural selection are population structures that increase the fixation probability of advantageous mutants, compared to well-mixed populations. Extensive studies have shown that many amplifiers exist for the Birth-death Moran process, some of them substantially increasing the fixation probability or even guaranteeing fixation in the limit of large population size. On the other hand, no amplifiers are known for the death-Birth Moran process, and computer-assisted exhaustive searches have failed to discover amplification. In this work we resolve this disparity, by showing that any amplification under death-Birth updating is necessarily bounded and transient. Our boundedness result states that even if a population structure does amplify selection, the resulting fixation probability is close to that of the well-mixed population. Our transience result states that for any population structure there exists a threshold r⋆ such that the population structure ceases to amplify selection if the mutant fitness advantage r is larger than r⋆. Finally, we also extend the above results to δ-death-Birth updating, which is a combination of Birth-death and death-Birth updating. On the positive side, we identify population structures that maintain amplification for a wide range of values r and δ. These results demonstrate that amplification of natural selection depends on the specific mechanisms of the evolutionary process."}],"year":"2020","citation":{"ista":"Tkadlec J, Pavlogiannis A, Chatterjee K, Nowak MA. 2020. Limits on amplifiers of natural selection under death-Birth updating. PLoS computational biology. 16, e1007494.","short":"J. Tkadlec, A. Pavlogiannis, K. Chatterjee, M.A. Nowak, PLoS Computational Biology 16 (2020).","mla":"Tkadlec, Josef, et al. “Limits on Amplifiers of Natural Selection under Death-Birth Updating.” <i>PLoS Computational Biology</i>, vol. 16, e1007494, Public Library of Science, 2020, doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1007494\">10.1371/journal.pcbi.1007494</a>.","chicago":"Tkadlec, Josef, Andreas Pavlogiannis, Krishnendu Chatterjee, and Martin A. Nowak. “Limits on Amplifiers of Natural Selection under Death-Birth Updating.” <i>PLoS Computational Biology</i>. Public Library of Science, 2020. <a href=\"https://doi.org/10.1371/journal.pcbi.1007494\">https://doi.org/10.1371/journal.pcbi.1007494</a>.","ieee":"J. Tkadlec, A. Pavlogiannis, K. Chatterjee, and M. A. Nowak, “Limits on amplifiers of natural selection under death-Birth updating,” <i>PLoS computational biology</i>, vol. 16. Public Library of Science, 2020.","apa":"Tkadlec, J., Pavlogiannis, A., Chatterjee, K., &#38; Nowak, M. A. (2020). Limits on amplifiers of natural selection under death-Birth updating. <i>PLoS Computational Biology</i>. Public Library of Science. <a href=\"https://doi.org/10.1371/journal.pcbi.1007494\">https://doi.org/10.1371/journal.pcbi.1007494</a>","ama":"Tkadlec J, Pavlogiannis A, Chatterjee K, Nowak MA. Limits on amplifiers of natural selection under death-Birth updating. <i>PLoS computational biology</i>. 2020;16. doi:<a href=\"https://doi.org/10.1371/journal.pcbi.1007494\">10.1371/journal.pcbi.1007494</a>"},"date_updated":"2023-10-17T12:29:47Z","external_id":{"isi":["000510916500025"],"arxiv":["1906.02785"]},"isi":1,"volume":16,"ddc":["000"],"date_created":"2019-12-23T13:45:11Z","department":[{"_id":"KrCh"}],"article_processing_charge":"No","publication_status":"published","intvolume":"        16","title":"Limits on amplifiers of natural selection under death-Birth updating","scopus_import":"1","_id":"7212","author":[{"first_name":"Josef","last_name":"Tkadlec","orcid":"0000-0002-1097-9684","full_name":"Tkadlec, Josef","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Pavlogiannis, Andreas","orcid":"0000-0002-8943-0722","last_name":"Pavlogiannis","first_name":"Andreas","id":"49704004-F248-11E8-B48F-1D18A9856A87"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu","first_name":"Krishnendu","last_name":"Chatterjee"},{"first_name":"Martin A.","last_name":"Nowak","full_name":"Nowak, Martin A."}],"publisher":"Public Library of Science","article_type":"original","quality_controlled":"1","ec_funded":1,"file_date_updated":"2020-07-14T12:47:53Z","publication_identifier":{"eissn":["15537358"]},"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"type":"journal_article","date_published":"2020-01-17T00:00:00Z","file":[{"file_name":"2020_PlosCompBio_Tkadlec.pdf","content_type":"application/pdf","date_updated":"2020-07-14T12:47:53Z","file_size":1817531,"checksum":"ce32ee2d2f53aed832f78bbd47e882df","date_created":"2020-02-03T07:32:42Z","creator":"dernst","file_id":"7441","access_level":"open_access","relation":"main_file"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","related_material":{"record":[{"relation":"part_of_dissertation","id":"7196","status":"public"}]},"status":"public","project":[{"name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"},{"grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","_id":"2584A770-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"Game Theory","grant_number":"S11407","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425"}],"oa_version":"Published Version","article_number":"e1007494","month":"01","has_accepted_license":"1","publication":"PLoS computational biology","language":[{"iso":"eng"}]},{"publication":"Complex Networks and their applications VIII","has_accepted_license":"1","month":"01","oa_version":"Submitted Version","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"language":[{"iso":"eng"}],"conference":{"start_date":"2019-12-10","name":"COMPLEX: International Conference on Complex Networks and their Applications","end_date":"2019-12-12","location":"Lisbon, Portugal"},"date_published":"2020-01-01T00:00:00Z","type":"conference","oa":1,"publication_identifier":{"isbn":["9783030366865"],"eissn":["18609503"],"issn":["1860949X"]},"status":"public","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2020-10-08T08:16:48Z","file_name":"main.pdf","content_type":"application/pdf","date_created":"2020-10-08T08:16:48Z","file_size":310598,"checksum":"8951f094c8c7dae9ff8db885199bc296","file_id":"8625","creator":"bchatter","relation":"main_file","success":1,"access_level":"open_access"}],"author":[{"full_name":"Bhatia, Sumit","last_name":"Bhatia","first_name":"Sumit"},{"id":"3C41A08A-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Bapi","full_name":"Chatterjee, Bapi","orcid":"0000-0002-2742-4028"},{"first_name":"Deepak","last_name":"Nathani","full_name":"Nathani, Deepak"},{"last_name":"Kaul","first_name":"Manohar","full_name":"Kaul, Manohar"}],"_id":"7213","scopus_import":"1","title":"A persistent homology perspective to the link prediction problem","alternative_title":["SCI"],"intvolume":"       881","publication_status":"published","department":[{"_id":"DaAl"}],"date_created":"2019-12-29T23:00:45Z","article_processing_charge":"No","file_date_updated":"2020-10-08T08:16:48Z","page":"27-39","quality_controlled":"1","ec_funded":1,"publisher":"Springer Nature","isi":1,"external_id":{"isi":["000843927300003"]},"date_updated":"2024-02-22T13:16:06Z","citation":{"short":"S. Bhatia, B. Chatterjee, D. Nathani, M. Kaul, in:, Complex Networks and Their Applications VIII, Springer Nature, 2020, pp. 27–39.","mla":"Bhatia, Sumit, et al. “A Persistent Homology Perspective to the Link Prediction Problem.” <i>Complex Networks and Their Applications VIII</i>, vol. 881, Springer Nature, 2020, pp. 27–39, doi:<a href=\"https://doi.org/10.1007/978-3-030-36687-2_3\">10.1007/978-3-030-36687-2_3</a>.","ista":"Bhatia S, Chatterjee B, Nathani D, Kaul M. 2020. A persistent homology perspective to the link prediction problem. Complex Networks and their applications VIII. COMPLEX: International Conference on Complex Networks and their Applications, SCI, vol. 881, 27–39.","apa":"Bhatia, S., Chatterjee, B., Nathani, D., &#38; Kaul, M. (2020). A persistent homology perspective to the link prediction problem. In <i>Complex Networks and their applications VIII</i> (Vol. 881, pp. 27–39). Lisbon, Portugal: Springer Nature. <a href=\"https://doi.org/10.1007/978-3-030-36687-2_3\">https://doi.org/10.1007/978-3-030-36687-2_3</a>","ama":"Bhatia S, Chatterjee B, Nathani D, Kaul M. A persistent homology perspective to the link prediction problem. In: <i>Complex Networks and Their Applications VIII</i>. Vol 881. Springer Nature; 2020:27-39. doi:<a href=\"https://doi.org/10.1007/978-3-030-36687-2_3\">10.1007/978-3-030-36687-2_3</a>","chicago":"Bhatia, Sumit, Bapi Chatterjee, Deepak Nathani, and Manohar Kaul. “A Persistent Homology Perspective to the Link Prediction Problem.” In <i>Complex Networks and Their Applications VIII</i>, 881:27–39. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/978-3-030-36687-2_3\">https://doi.org/10.1007/978-3-030-36687-2_3</a>.","ieee":"S. Bhatia, B. Chatterjee, D. Nathani, and M. Kaul, “A persistent homology perspective to the link prediction problem,” in <i>Complex Networks and their applications VIII</i>, Lisbon, Portugal, 2020, vol. 881, pp. 27–39."},"year":"2020","abstract":[{"lang":"eng","text":"Persistent homology is a powerful tool in Topological Data Analysis (TDA) to capture the topological properties of data succinctly at different spatial resolutions. For graphical data, the shape, and structure of the neighborhood of individual data items (nodes) are an essential means of characterizing their properties. We propose the use of persistent homology methods to capture structural and topological properties of graphs and use it to address the problem of link prediction. We achieve encouraging results on nine different real-world datasets that attest to the potential of persistent homology-based methods for network analysis."}],"doi":"10.1007/978-3-030-36687-2_3","day":"01","ddc":["004"],"volume":881},{"month":"08","oa_version":"None","publication":"International Journal of Oral and Maxillofacial Surgery","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1399-0020"],"issn":["0901-5027"]},"date_published":"2020-08-01T00:00:00Z","type":"journal_article","status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","title":"Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method","intvolume":"        49","publication_status":"published","article_processing_charge":"No","department":[{"_id":"BeBi"}],"date_created":"2019-12-29T23:00:47Z","author":[{"full_name":"Dodier, Philippe","first_name":"Philippe","last_name":"Dodier"},{"full_name":"Winter, Fabian","first_name":"Fabian","last_name":"Winter"},{"id":"4718F954-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1546-3265","full_name":"Auzinger, Thomas","first_name":"Thomas","last_name":"Auzinger"},{"first_name":"Gabriel","last_name":"Mistelbauer","full_name":"Mistelbauer, Gabriel"},{"full_name":"Frischer, Josa M.","last_name":"Frischer","first_name":"Josa M."},{"full_name":"Wang, Wei Te","first_name":"Wei Te","last_name":"Wang"},{"last_name":"Mallouhi","first_name":"Ammar","full_name":"Mallouhi, Ammar"},{"full_name":"Marik, Wolfgang","first_name":"Wolfgang","last_name":"Marik"},{"full_name":"Wolfsberger, Stefan","first_name":"Stefan","last_name":"Wolfsberger"},{"full_name":"Reissig, Lukas","first_name":"Lukas","last_name":"Reissig"},{"first_name":"Firas","last_name":"Hammadi","full_name":"Hammadi, Firas"},{"first_name":"Christian","last_name":"Matula","full_name":"Matula, Christian"},{"full_name":"Baumann, Arnulf","first_name":"Arnulf","last_name":"Baumann"},{"last_name":"Bavinzski","first_name":"Gerhard","full_name":"Bavinzski, Gerhard"}],"issue":"8","_id":"7218","pmid":1,"scopus_import":"1","article_type":"original","publisher":"Elsevier","page":"P1007-1015","quality_controlled":"1","abstract":[{"text":"The combined resection of skull-infiltrating tumours and immediate cranioplastic reconstruction predominantly relies on freehand-moulded solutions. Techniques that enable this procedure to be performed easily in routine clinical practice would be useful. A cadaveric study was developed in which a new software tool was used to perform single-stage reconstructions with prefabricated implants after the resection of skull-infiltrating pathologies. A novel 3D visualization and interaction framework was developed to create 10 virtual craniotomies in five cadaveric specimens. Polyether ether ketone (PEEK) implants were manufactured according to the bone defects. The image-guided craniotomy was reconstructed with PEEK and compared to polymethyl methacrylate (PMMA). Navigational accuracy and surgical precision were assessed. The PEEK workflow resulted in up to 10-fold shorter reconstruction times than the standard technique. Surgical precision was reflected by the mean 1.1 ± 0.29 mm distance between the virtual and real craniotomy, with submillimetre precision in 50%. Assessment of the global offset between virtual and actual craniotomy revealed an average shift of 4.5 ± 3.6 mm. The results validated the ‘elective single-stage cranioplasty’ technique as a state-of-the-art virtual planning method and surgical workflow. This patient-tailored workflow could significantly reduce surgical times compared to the traditional, intraoperative acrylic moulding method and may be an option for the reconstruction of bone defects in the craniofacial region.","lang":"eng"}],"doi":"10.1016/j.ijom.2019.11.011","day":"01","isi":1,"external_id":{"isi":["000556819800005"],"pmid":["31866145"]},"date_updated":"2023-08-17T14:15:22Z","citation":{"mla":"Dodier, Philippe, et al. “Single-Stage Bone Resection and Cranioplastic Reconstruction: Comparison of a Novel Software-Derived PEEK Workflow with the Standard Reconstructive Method.” <i>International Journal of Oral and Maxillofacial Surgery</i>, vol. 49, no. 8, Elsevier, 2020, pp. P1007-1015, doi:<a href=\"https://doi.org/10.1016/j.ijom.2019.11.011\">10.1016/j.ijom.2019.11.011</a>.","short":"P. Dodier, F. Winter, T. Auzinger, G. Mistelbauer, J.M. Frischer, W.T. Wang, A. Mallouhi, W. Marik, S. Wolfsberger, L. Reissig, F. Hammadi, C. Matula, A. Baumann, G. Bavinzski, International Journal of Oral and Maxillofacial Surgery 49 (2020) P1007-1015.","ista":"Dodier P, Winter F, Auzinger T, Mistelbauer G, Frischer JM, Wang WT, Mallouhi A, Marik W, Wolfsberger S, Reissig L, Hammadi F, Matula C, Baumann A, Bavinzski G. 2020. Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. International Journal of Oral and Maxillofacial Surgery. 49(8), P1007-1015.","apa":"Dodier, P., Winter, F., Auzinger, T., Mistelbauer, G., Frischer, J. M., Wang, W. T., … Bavinzski, G. (2020). Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. <i>International Journal of Oral and Maxillofacial Surgery</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.ijom.2019.11.011\">https://doi.org/10.1016/j.ijom.2019.11.011</a>","ama":"Dodier P, Winter F, Auzinger T, et al. Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method. <i>International Journal of Oral and Maxillofacial Surgery</i>. 2020;49(8):P1007-1015. doi:<a href=\"https://doi.org/10.1016/j.ijom.2019.11.011\">10.1016/j.ijom.2019.11.011</a>","ieee":"P. Dodier <i>et al.</i>, “Single-stage bone resection and cranioplastic reconstruction: Comparison of a novel software-derived PEEK workflow with the standard reconstructive method,” <i>International Journal of Oral and Maxillofacial Surgery</i>, vol. 49, no. 8. Elsevier, pp. P1007-1015, 2020.","chicago":"Dodier, Philippe, Fabian Winter, Thomas Auzinger, Gabriel Mistelbauer, Josa M. Frischer, Wei Te Wang, Ammar Mallouhi, et al. “Single-Stage Bone Resection and Cranioplastic Reconstruction: Comparison of a Novel Software-Derived PEEK Workflow with the Standard Reconstructive Method.” <i>International Journal of Oral and Maxillofacial Surgery</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.ijom.2019.11.011\">https://doi.org/10.1016/j.ijom.2019.11.011</a>."},"year":"2020","volume":49},{"publication":"Trends in Plant Science","oa_version":"None","month":"02","language":[{"iso":"eng"}],"type":"journal_article","date_published":"2020-02-01T00:00:00Z","publication_identifier":{"issn":["13601385"]},"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","_id":"7219","pmid":1,"issue":"2","author":[{"last_name":"Xiao","first_name":"Guanghui","full_name":"Xiao, Guanghui"},{"id":"3B6137F2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2627-6956","full_name":"Zhang, Yuzhou","first_name":"Yuzhou","last_name":"Zhang"}],"date_created":"2019-12-29T23:00:48Z","article_processing_charge":"No","department":[{"_id":"JiFr"}],"publication_status":"published","intvolume":"        25","title":"Adaptive growth: Shaping auxin-mediated root system architecture","quality_controlled":"1","page":"P121-123","publisher":"Elsevier","article_type":"original","year":"2020","citation":{"ama":"Xiao G, Zhang Y. Adaptive growth: Shaping auxin-mediated root system architecture. <i>Trends in Plant Science</i>. 2020;25(2):P121-123. doi:<a href=\"https://doi.org/10.1016/j.tplants.2019.12.001\">10.1016/j.tplants.2019.12.001</a>","apa":"Xiao, G., &#38; Zhang, Y. (2020). Adaptive growth: Shaping auxin-mediated root system architecture. <i>Trends in Plant Science</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.tplants.2019.12.001\">https://doi.org/10.1016/j.tplants.2019.12.001</a>","ieee":"G. Xiao and Y. Zhang, “Adaptive growth: Shaping auxin-mediated root system architecture,” <i>Trends in Plant Science</i>, vol. 25, no. 2. Elsevier, pp. P121-123, 2020.","chicago":"Xiao, Guanghui, and Yuzhou Zhang. “Adaptive Growth: Shaping Auxin-Mediated Root System Architecture.” <i>Trends in Plant Science</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.tplants.2019.12.001\">https://doi.org/10.1016/j.tplants.2019.12.001</a>.","short":"G. Xiao, Y. Zhang, Trends in Plant Science 25 (2020) P121-123.","mla":"Xiao, Guanghui, and Yuzhou Zhang. “Adaptive Growth: Shaping Auxin-Mediated Root System Architecture.” <i>Trends in Plant Science</i>, vol. 25, no. 2, Elsevier, 2020, pp. P121-123, doi:<a href=\"https://doi.org/10.1016/j.tplants.2019.12.001\">10.1016/j.tplants.2019.12.001</a>.","ista":"Xiao G, Zhang Y. 2020. Adaptive growth: Shaping auxin-mediated root system architecture. Trends in Plant Science. 25(2), P121-123."},"date_updated":"2023-08-17T14:14:50Z","external_id":{"isi":["000508637500001"],"pmid":["31843370"]},"isi":1,"day":"01","doi":"10.1016/j.tplants.2019.12.001","abstract":[{"text":"Root system architecture (RSA), governed by the phytohormone auxin, endows plants with an adaptive advantage in particular environments. Using geographically representative arabidopsis (Arabidopsis thaliana) accessions as a resource for GWA mapping, Waidmann et al. and Ogura et al. recently identified two novel components involved in modulating auxin-mediated RSA and conferring plant fitness in particular habitats.","lang":"eng"}],"volume":25},{"language":[{"iso":"eng"}],"publication":"World Neurosurgery","month":"02","oa_version":"None","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","type":"journal_article","date_published":"2020-02-01T00:00:00Z","publication_identifier":{"eissn":["1878-8769"],"issn":["1878-8750"]},"quality_controlled":"1","page":"e892-e902","article_type":"original","publisher":"Elsevier","issue":"2","author":[{"full_name":"Dodier, Philippe","last_name":"Dodier","first_name":"Philippe"},{"id":"4718F954-F248-11E8-B48F-1D18A9856A87","full_name":"Auzinger, Thomas","orcid":"0000-0002-1546-3265","last_name":"Auzinger","first_name":"Thomas"},{"full_name":"Mistelbauer, Gabriel","first_name":"Gabriel","last_name":"Mistelbauer"},{"last_name":"Wang","first_name":"Wei Te","full_name":"Wang, Wei Te"},{"full_name":"Ferraz-Leite, Heber","first_name":"Heber","last_name":"Ferraz-Leite"},{"last_name":"Gruber","first_name":"Andreas","full_name":"Gruber, Andreas"},{"first_name":"Wolfgang","last_name":"Marik","full_name":"Marik, Wolfgang"},{"first_name":"Fabian","last_name":"Winter","full_name":"Winter, Fabian"},{"full_name":"Fischer, Gerrit","first_name":"Gerrit","last_name":"Fischer"},{"first_name":"Josa M.","last_name":"Frischer","full_name":"Frischer, Josa M."},{"full_name":"Bavinzski, Gerhard","first_name":"Gerhard","last_name":"Bavinzski"}],"scopus_import":"1","_id":"7220","pmid":1,"intvolume":"       134","title":"Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography","article_processing_charge":"No","date_created":"2019-12-29T23:00:48Z","department":[{"_id":"BeBi"}],"publication_status":"published","volume":134,"external_id":{"isi":["000512878200104"],"pmid":["31733380"]},"isi":1,"year":"2020","citation":{"ieee":"P. Dodier <i>et al.</i>, “Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography,” <i>World Neurosurgery</i>, vol. 134, no. 2. Elsevier, pp. e892–e902, 2020.","chicago":"Dodier, Philippe, Thomas Auzinger, Gabriel Mistelbauer, Wei Te Wang, Heber Ferraz-Leite, Andreas Gruber, Wolfgang Marik, et al. “Novel Software-Derived Workflow in Extracranial–Intracranial Bypass Surgery Validated by Transdural Indocyanine Green Videoangiography.” <i>World Neurosurgery</i>. Elsevier, 2020. <a href=\"https://doi.org/10.1016/j.wneu.2019.11.038\">https://doi.org/10.1016/j.wneu.2019.11.038</a>.","apa":"Dodier, P., Auzinger, T., Mistelbauer, G., Wang, W. T., Ferraz-Leite, H., Gruber, A., … Bavinzski, G. (2020). Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. <i>World Neurosurgery</i>. Elsevier. <a href=\"https://doi.org/10.1016/j.wneu.2019.11.038\">https://doi.org/10.1016/j.wneu.2019.11.038</a>","ama":"Dodier P, Auzinger T, Mistelbauer G, et al. Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. <i>World Neurosurgery</i>. 2020;134(2):e892-e902. doi:<a href=\"https://doi.org/10.1016/j.wneu.2019.11.038\">10.1016/j.wneu.2019.11.038</a>","ista":"Dodier P, Auzinger T, Mistelbauer G, Wang WT, Ferraz-Leite H, Gruber A, Marik W, Winter F, Fischer G, Frischer JM, Bavinzski G. 2020. Novel software-derived workflow in extracranial–intracranial bypass surgery validated by transdural indocyanine green videoangiography. World Neurosurgery. 134(2), e892–e902.","short":"P. Dodier, T. Auzinger, G. Mistelbauer, W.T. Wang, H. Ferraz-Leite, A. Gruber, W. Marik, F. Winter, G. Fischer, J.M. Frischer, G. Bavinzski, World Neurosurgery 134 (2020) e892–e902.","mla":"Dodier, Philippe, et al. “Novel Software-Derived Workflow in Extracranial–Intracranial Bypass Surgery Validated by Transdural Indocyanine Green Videoangiography.” <i>World Neurosurgery</i>, vol. 134, no. 2, Elsevier, 2020, pp. e892–902, doi:<a href=\"https://doi.org/10.1016/j.wneu.2019.11.038\">10.1016/j.wneu.2019.11.038</a>."},"date_updated":"2023-08-17T14:14:23Z","abstract":[{"lang":"eng","text":"BACKGROUND:The introduction of image-guided methods to bypass surgery has resulted in optimized preoperative identification of the recipients and excellent patency rates. However, the recently presented methods have also been resource-consuming. In the present study, we have reported a cost-efficient planning workflow for extracranial-intracranial (EC-IC) revascularization combined with transdural indocyanine green videoangiography (tICG-VA). METHODS:We performed a retrospective review at a single tertiary referral center from 2011 to 2018. A novel software-derived workflow was applied for 25 of 92 bypass procedures during the study period. The precision and accuracy were assessed using tICG-VA identification of the cortical recipients and a comparison of the virtual and actual data. The data from a control group of 25 traditionally planned procedures were also matched. RESULTS:The intraoperative transfer time of the calculated coordinates averaged 0.8 minute (range, 0.4-1.9 minutes). The definitive recipients matched the targeted branches in 80%, and a neighboring branch was used in 16%. Our workflow led to a significant craniotomy size reduction in the study group compared with that in the control group (P = 0.005). tICG-VA was successfully applied in 19 cases. An average of 2 potential recipient arteries were identified transdurally, resulting in tailored durotomy and 3 craniotomy adjustments. Follow-up patency results were available for 49 bypass surgeries, comprising 54 grafts. The overall patency rate was 91% at a median follow-up period of 26 months. No significant difference was found in the patency rate between the study and control groups (P = 0.317). CONCLUSIONS:Our clinical results have validated the presented planning and surgical workflow and support the routine implementation of tICG-VA for recipient identification before durotomy."}],"day":"01","doi":"10.1016/j.wneu.2019.11.038"},{"ddc":["000"],"volume":23,"isi":1,"external_id":{"isi":["000503625200001"]},"date_updated":"2023-09-05T16:04:30Z","citation":{"short":"J. Rybicki, N. Abrego, O. Ovaskainen, Ecology Letters 23 (2020) 506–517.","mla":"Rybicki, Joel, et al. “Habitat Fragmentation and Species Diversity in Competitive Communities.” <i>Ecology Letters</i>, vol. 23, no. 3, Wiley, 2020, pp. 506–17, doi:<a href=\"https://doi.org/10.1111/ele.13450\">10.1111/ele.13450</a>.","ista":"Rybicki J, Abrego N, Ovaskainen O. 2020. Habitat fragmentation and species diversity in competitive communities. Ecology Letters. 23(3), 506–517.","apa":"Rybicki, J., Abrego, N., &#38; Ovaskainen, O. (2020). Habitat fragmentation and species diversity in competitive communities. <i>Ecology Letters</i>. Wiley. <a href=\"https://doi.org/10.1111/ele.13450\">https://doi.org/10.1111/ele.13450</a>","ama":"Rybicki J, Abrego N, Ovaskainen O. Habitat fragmentation and species diversity in competitive communities. <i>Ecology Letters</i>. 2020;23(3):506-517. doi:<a href=\"https://doi.org/10.1111/ele.13450\">10.1111/ele.13450</a>","chicago":"Rybicki, Joel, Nerea Abrego, and Otso Ovaskainen. “Habitat Fragmentation and Species Diversity in Competitive Communities.” <i>Ecology Letters</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/ele.13450\">https://doi.org/10.1111/ele.13450</a>.","ieee":"J. Rybicki, N. Abrego, and O. Ovaskainen, “Habitat fragmentation and species diversity in competitive communities,” <i>Ecology Letters</i>, vol. 23, no. 3. Wiley, pp. 506–517, 2020."},"year":"2020","abstract":[{"lang":"eng","text":"Habitat loss is one of the key drivers of the ongoing decline of biodiversity. However, ecologists still argue about how fragmentation of habitat (independent of habitat loss) affects species richness. The recently proposed habitat amount hypothesis posits that species richness only depends on the total amount of habitat in a local landscape. In contrast, empirical studies report contrasting patterns: some find positive and others negative effects of fragmentation per se on species richness. To explain this apparent disparity, we devise a stochastic, spatially explicit model of competitive species communities in heterogeneous habitats. The model shows that habitat loss and fragmentation have complex effects on species diversity in competitive communities. When the total amount of habitat is large, fragmentation per se tends to increase species diversity, but if the total amount of habitat is small, the situation is reversed: fragmentation per se decreases species diversity."}],"doi":"10.1111/ele.13450","day":"01","file_date_updated":"2020-07-14T12:47:54Z","page":"506-517","quality_controlled":"1","ec_funded":1,"article_type":"original","publisher":"Wiley","author":[{"first_name":"Joel","last_name":"Rybicki","orcid":"0000-0002-6432-6646","full_name":"Rybicki, Joel","id":"334EFD2E-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Nerea","last_name":"Abrego","full_name":"Abrego, Nerea"},{"last_name":"Ovaskainen","first_name":"Otso","full_name":"Ovaskainen, Otso"}],"issue":"3","_id":"7224","scopus_import":"1","title":"Habitat fragmentation and species diversity in competitive communities","intvolume":"        23","publication_status":"published","department":[{"_id":"DaAl"}],"date_created":"2020-01-04T11:04:30Z","article_processing_charge":"Yes (via OA deal)","status":"public","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","file":[{"date_updated":"2020-07-14T12:47:54Z","file_name":"2020_EcologyLetters_Rybicki.pdf","content_type":"application/pdf","date_created":"2020-02-14T12:02:50Z","file_size":3005474,"checksum":"372f67f2744f4b6049e9778364766c22","file_id":"7486","creator":"dernst","access_level":"open_access","relation":"main_file"}],"date_published":"2020-03-01T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"publication_identifier":{"issn":["1461-023X"],"eissn":["1461-0248"]},"language":[{"iso":"eng"}],"publication":"Ecology Letters","has_accepted_license":"1","month":"03","oa_version":"Published Version","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"call_identifier":"H2020","_id":"26A5D39A-B435-11E9-9278-68D0E5697425","name":"Coordination in constrained and natural distributed systems","grant_number":"840605"}]},{"language":[{"iso":"eng"}],"oa_version":"None","project":[{"_id":"260F1432-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"742573","name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation"},{"name":"Control of embryonic cleavage pattern","grant_number":"I03601","call_identifier":"FWF","_id":"2646861A-B435-11E9-9278-68D0E5697425"},{"grant_number":"I03196","name":"Control of epithelial cell layer spreading in zebrafish","_id":"2608FC64-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"name":"Coordination of mesendoderm fate specification and internalization during zebrafish gastrulation","grant_number":"LT000429","_id":"266BC5CE-B435-11E9-9278-68D0E5697425"},{"name":"Coordination of mesendoderm cell fate specification and internalization during zebrafish gastrulation","grant_number":"ALTF 850-2017","_id":"26520D1E-B435-11E9-9278-68D0E5697425"}],"month":"06","publication":"Gastrulation: From Embryonic Pattern to Form","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","publication_identifier":{"issn":["00702153"]},"date_published":"2020-06-01T00:00:00Z","type":"book_chapter","publisher":"Elsevier","page":"343-375","ec_funded":1,"quality_controlled":"1","publication_status":"published","article_processing_charge":"No","date_created":"2020-01-05T23:00:46Z","department":[{"_id":"CaHe"}],"alternative_title":["Current Topics in Developmental Biology"],"title":"Zebrafish gastrulation: Putting fate in motion","intvolume":"       136","_id":"7227","pmid":1,"scopus_import":"1","author":[{"last_name":"Nunes Pinheiro","first_name":"Diana C","full_name":"Nunes Pinheiro, Diana C","orcid":"0000-0003-4333-7503","id":"2E839F16-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Carl-Philipp J","last_name":"Heisenberg","orcid":"0000-0002-0912-4566","full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87"}],"volume":136,"acknowledgement":"We thank Alexandra Schauer, Nicoletta Petridou and Feyza Nur Arslan for comments on the manuscript. Research in the Heisenberg laboratory is supported by an ERC Advanced Grant (MECSPEC 742573), ANR/FWF (I03601) and FWF/DFG (I03196) International Cooperation Grants. D. Pinheiro acknowledges a fellowship from EMBO ALTF (850-2017) and is currently supported by HFSP LTF (LT000429/2018-L2).","doi":"10.1016/bs.ctdb.2019.10.009","day":"01","abstract":[{"lang":"eng","text":"Gastrulation entails specification and formation of three embryonic germ layers—ectoderm, mesoderm and endoderm—thereby establishing the basis for the future body plan. In zebrafish embryos, germ layer specification occurs during blastula and early gastrula stages (Ho & Kimmel, 1993), a period when the main morphogenetic movements underlying gastrulation are initiated. Hence, the signals driving progenitor cell fate specification, such as Nodal ligands from the TGF-β family, also play key roles in regulating germ layer progenitor cell segregation (Carmany-Rampey & Schier, 2001; David & Rosa, 2001; Feldman et al., 2000; Gritsman et al., 1999; Keller et al., 2008). In this review, we summarize and discuss the main signaling pathways involved in germ layer progenitor cell fate specification and segregation, specifically focusing on recent advances in understanding the interplay between mesoderm and endoderm specification and the internalization movements at the onset of zebrafish gastrulation."}],"date_updated":"2023-09-06T14:54:36Z","citation":{"mla":"Nunes Pinheiro, Diana C., and Carl-Philipp J. Heisenberg. “Zebrafish Gastrulation: Putting Fate in Motion.” <i>Gastrulation: From Embryonic Pattern to Form</i>, vol. 136, Elsevier, 2020, pp. 343–75, doi:<a href=\"https://doi.org/10.1016/bs.ctdb.2019.10.009\">10.1016/bs.ctdb.2019.10.009</a>.","short":"D.C. Nunes Pinheiro, C.-P.J. Heisenberg, in:, Gastrulation: From Embryonic Pattern to Form, Elsevier, 2020, pp. 343–375.","ista":"Nunes Pinheiro DC, Heisenberg C-PJ. 2020.Zebrafish gastrulation: Putting fate in motion. In: Gastrulation: From Embryonic Pattern to Form. Current Topics in Developmental Biology, vol. 136, 343–375.","ama":"Nunes Pinheiro DC, Heisenberg C-PJ. Zebrafish gastrulation: Putting fate in motion. In: <i>Gastrulation: From Embryonic Pattern to Form</i>. Vol 136. Elsevier; 2020:343-375. doi:<a href=\"https://doi.org/10.1016/bs.ctdb.2019.10.009\">10.1016/bs.ctdb.2019.10.009</a>","apa":"Nunes Pinheiro, D. C., &#38; Heisenberg, C.-P. J. (2020). Zebrafish gastrulation: Putting fate in motion. In <i>Gastrulation: From Embryonic Pattern to Form</i> (Vol. 136, pp. 343–375). Elsevier. <a href=\"https://doi.org/10.1016/bs.ctdb.2019.10.009\">https://doi.org/10.1016/bs.ctdb.2019.10.009</a>","ieee":"D. C. Nunes Pinheiro and C.-P. J. Heisenberg, “Zebrafish gastrulation: Putting fate in motion,” in <i>Gastrulation: From Embryonic Pattern to Form</i>, vol. 136, Elsevier, 2020, pp. 343–375.","chicago":"Nunes Pinheiro, Diana C, and Carl-Philipp J Heisenberg. “Zebrafish Gastrulation: Putting Fate in Motion.” In <i>Gastrulation: From Embryonic Pattern to Form</i>, 136:343–75. Elsevier, 2020. <a href=\"https://doi.org/10.1016/bs.ctdb.2019.10.009\">https://doi.org/10.1016/bs.ctdb.2019.10.009</a>."},"year":"2020","isi":1,"external_id":{"isi":["000611830600013"],"pmid":["31959295"]}},{"language":[{"iso":"eng"}],"publication":"Immunology and Cell Biology","has_accepted_license":"1","month":"02","oa_version":"Published Version","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","file":[{"success":1,"access_level":"open_access","relation":"main_file","creator":"dernst","file_id":"8775","file_size":8569945,"checksum":"c389477b4b52172ef76afff8a06c6775","date_created":"2020-11-19T11:22:33Z","content_type":"application/pdf","file_name":"2020_ImmunologyCellBio_Obeidy.pdf","date_updated":"2020-11-19T11:22:33Z"}],"date_published":"2020-02-01T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"publication_identifier":{"issn":["08189641"],"eissn":["14401711"]},"file_date_updated":"2020-11-19T11:22:33Z","page":"93-113","quality_controlled":"1","article_type":"original","publisher":"Wiley","author":[{"first_name":"Peyman","last_name":"Obeidy","full_name":"Obeidy, Peyman"},{"first_name":"Lining A.","last_name":"Ju","full_name":"Ju, Lining A."},{"first_name":"Stefan H.","last_name":"Oehlers","full_name":"Oehlers, Stefan H."},{"full_name":"Zulkhernain, Nursafwana S.","last_name":"Zulkhernain","first_name":"Nursafwana S."},{"full_name":"Lee, Quintin","first_name":"Quintin","last_name":"Lee"},{"first_name":"Jorge L.","last_name":"Galeano Niño","full_name":"Galeano Niño, Jorge L."},{"full_name":"Kwan, Rain Y.Q.","first_name":"Rain Y.Q.","last_name":"Kwan"},{"last_name":"Tikoo","first_name":"Shweta","full_name":"Tikoo, Shweta"},{"last_name":"Cavanagh","first_name":"Lois L.","full_name":"Cavanagh, Lois L."},{"full_name":"Mrass, Paulus","last_name":"Mrass","first_name":"Paulus"},{"last_name":"Cook","first_name":"Adam J.L.","full_name":"Cook, Adam J.L."},{"first_name":"Shaun P.","last_name":"Jackson","full_name":"Jackson, Shaun P."},{"full_name":"Biro, Maté","last_name":"Biro","first_name":"Maté"},{"full_name":"Roediger, Ben","last_name":"Roediger","first_name":"Ben"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","full_name":"Sixt, Michael K","first_name":"Michael K","last_name":"Sixt"},{"first_name":"Wolfgang","last_name":"Weninger","full_name":"Weninger, Wolfgang"}],"issue":"2","pmid":1,"_id":"7234","scopus_import":"1","title":"Partial loss of actin nucleator actin-related protein 2/3 activity triggers blebbing in primary T lymphocytes","intvolume":"        98","publication_status":"published","date_created":"2020-01-05T23:00:48Z","department":[{"_id":"MiSi"}],"article_processing_charge":"No","ddc":["570"],"volume":98,"isi":1,"external_id":{"isi":["000503885600001"],"pmid":["31698518"]},"date_updated":"2023-08-17T14:21:12Z","citation":{"short":"P. Obeidy, L.A. Ju, S.H. Oehlers, N.S. Zulkhernain, Q. Lee, J.L. Galeano Niño, R.Y.Q. Kwan, S. Tikoo, L.L. Cavanagh, P. Mrass, A.J.L. Cook, S.P. Jackson, M. Biro, B. Roediger, M.K. Sixt, W. Weninger, Immunology and Cell Biology 98 (2020) 93–113.","mla":"Obeidy, Peyman, et al. “Partial Loss of Actin Nucleator Actin-Related Protein 2/3 Activity Triggers Blebbing in Primary T Lymphocytes.” <i>Immunology and Cell Biology</i>, vol. 98, no. 2, Wiley, 2020, pp. 93–113, doi:<a href=\"https://doi.org/10.1111/imcb.12304\">10.1111/imcb.12304</a>.","ista":"Obeidy P, Ju LA, Oehlers SH, Zulkhernain NS, Lee Q, Galeano Niño JL, Kwan RYQ, Tikoo S, Cavanagh LL, Mrass P, Cook AJL, Jackson SP, Biro M, Roediger B, Sixt MK, Weninger W. 2020. Partial loss of actin nucleator actin-related protein 2/3 activity triggers blebbing in primary T lymphocytes. Immunology and Cell Biology. 98(2), 93–113.","apa":"Obeidy, P., Ju, L. A., Oehlers, S. H., Zulkhernain, N. S., Lee, Q., Galeano Niño, J. L., … Weninger, W. (2020). Partial loss of actin nucleator actin-related protein 2/3 activity triggers blebbing in primary T lymphocytes. <i>Immunology and Cell Biology</i>. Wiley. <a href=\"https://doi.org/10.1111/imcb.12304\">https://doi.org/10.1111/imcb.12304</a>","ama":"Obeidy P, Ju LA, Oehlers SH, et al. Partial loss of actin nucleator actin-related protein 2/3 activity triggers blebbing in primary T lymphocytes. <i>Immunology and Cell Biology</i>. 2020;98(2):93-113. doi:<a href=\"https://doi.org/10.1111/imcb.12304\">10.1111/imcb.12304</a>","chicago":"Obeidy, Peyman, Lining A. Ju, Stefan H. Oehlers, Nursafwana S. Zulkhernain, Quintin Lee, Jorge L. Galeano Niño, Rain Y.Q. Kwan, et al. “Partial Loss of Actin Nucleator Actin-Related Protein 2/3 Activity Triggers Blebbing in Primary T Lymphocytes.” <i>Immunology and Cell Biology</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/imcb.12304\">https://doi.org/10.1111/imcb.12304</a>.","ieee":"P. Obeidy <i>et al.</i>, “Partial loss of actin nucleator actin-related protein 2/3 activity triggers blebbing in primary T lymphocytes,” <i>Immunology and Cell Biology</i>, vol. 98, no. 2. Wiley, pp. 93–113, 2020."},"year":"2020","abstract":[{"text":"T lymphocytes utilize amoeboid migration to navigate effectively within complex microenvironments. The precise rearrangement of the actin cytoskeleton required for cellular forward propulsion is mediated by actin regulators, including the actin‐related protein 2/3 (Arp2/3) complex, a macromolecular machine that nucleates branched actin filaments at the leading edge. The consequences of modulating Arp2/3 activity on the biophysical properties of the actomyosin cortex and downstream T cell function are incompletely understood. We report that even a moderate decrease of Arp3 levels in T cells profoundly affects actin cortex integrity. Reduction in total F‐actin content leads to reduced cortical tension and disrupted lamellipodia formation. Instead, in Arp3‐knockdown cells, the motility mode is dominated by blebbing migration characterized by transient, balloon‐like protrusions at the leading edge. Although this migration mode seems to be compatible with interstitial migration in three‐dimensional environments, diminished locomotion kinetics and impaired cytotoxicity interfere with optimal T cell function. These findings define the importance of finely tuned, Arp2/3‐dependent mechanophysical membrane integrity in cytotoxic effector T lymphocyte activities.","lang":"eng"}],"doi":"10.1111/imcb.12304","day":"01"},{"publisher":"Springer Nature","article_type":"original","ec_funded":1,"quality_controlled":"1","page":"23-33","file_date_updated":"2020-11-19T11:13:55Z","department":[{"_id":"RoSe"}],"date_created":"2020-01-07T09:42:03Z","article_processing_charge":"Yes (via OA deal)","publication_status":"published","intvolume":"       180","title":"Divergence of the effective mass of a polaron in the strong coupling limit","scopus_import":"1","_id":"7235","author":[{"first_name":"Elliott H.","last_name":"Lieb","full_name":"Lieb, Elliott H."},{"first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"acknowledgement":"Open access funding provided by Institute of Science and Technology (IST Austria). Financial support through the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 694227; R.S.) is gratefully acknowledged.","volume":180,"ddc":["510","530"],"day":"01","doi":"10.1007/s10955-019-02322-3","abstract":[{"lang":"eng","text":"We consider the Fröhlich model of a polaron, and show that its effective mass diverges in thestrong coupling limit."}],"year":"2020","citation":{"ista":"Lieb EH, Seiringer R. 2020. Divergence of the effective mass of a polaron in the strong coupling limit. Journal of Statistical Physics. 180, 23–33.","short":"E.H. Lieb, R. Seiringer, Journal of Statistical Physics 180 (2020) 23–33.","mla":"Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass of a Polaron in the Strong Coupling Limit.” <i>Journal of Statistical Physics</i>, vol. 180, Springer Nature, 2020, pp. 23–33, doi:<a href=\"https://doi.org/10.1007/s10955-019-02322-3\">10.1007/s10955-019-02322-3</a>.","chicago":"Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass of a Polaron in the Strong Coupling Limit.” <i>Journal of Statistical Physics</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1007/s10955-019-02322-3\">https://doi.org/10.1007/s10955-019-02322-3</a>.","ieee":"E. H. Lieb and R. Seiringer, “Divergence of the effective mass of a polaron in the strong coupling limit,” <i>Journal of Statistical Physics</i>, vol. 180. Springer Nature, pp. 23–33, 2020.","apa":"Lieb, E. H., &#38; Seiringer, R. (2020). Divergence of the effective mass of a polaron in the strong coupling limit. <i>Journal of Statistical Physics</i>. Springer Nature. <a href=\"https://doi.org/10.1007/s10955-019-02322-3\">https://doi.org/10.1007/s10955-019-02322-3</a>","ama":"Lieb EH, Seiringer R. Divergence of the effective mass of a polaron in the strong coupling limit. <i>Journal of Statistical Physics</i>. 2020;180:23-33. doi:<a href=\"https://doi.org/10.1007/s10955-019-02322-3\">10.1007/s10955-019-02322-3</a>"},"date_updated":"2023-09-05T14:57:29Z","external_id":{"isi":["000556199700003"]},"isi":1,"language":[{"iso":"eng"}],"project":[{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"},{"grant_number":"694227","name":"Analysis of quantum many-body systems","_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"oa_version":"Published Version","month":"09","has_accepted_license":"1","publication":"Journal of Statistical Physics","file":[{"date_created":"2020-11-19T11:13:55Z","file_size":279749,"checksum":"1e67bee6728592f7bdcea2ad2d9366dc","date_updated":"2020-11-19T11:13:55Z","file_name":"2020_JourStatPhysics_Lieb.pdf","content_type":"application/pdf","success":1,"relation":"main_file","access_level":"open_access","file_id":"8774","creator":"dernst"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public","publication_identifier":{"issn":["0022-4715"],"eissn":["1572-9613"]},"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"type":"journal_article","date_published":"2020-09-01T00:00:00Z"},{"_id":"7236","scopus_import":"1","author":[{"id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87","full_name":"Baskett, Carina","orcid":"0000-0002-7354-8574","last_name":"Baskett","first_name":"Carina"},{"full_name":"Schroeder, Lucy","last_name":"Schroeder","first_name":"Lucy"},{"first_name":"Marjorie G.","last_name":"Weber","full_name":"Weber, Marjorie G."},{"last_name":"Schemske","first_name":"Douglas W.","full_name":"Schemske, Douglas W."}],"issue":"1","publication_status":"published","date_created":"2020-01-07T12:47:07Z","article_processing_charge":"Yes (via OA deal)","department":[{"_id":"NiBa"}],"title":"Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair","intvolume":"        90","ec_funded":1,"quality_controlled":"1","file_date_updated":"2020-07-14T12:47:54Z","publisher":"Wiley","article_type":"original","date_updated":"2023-09-05T15:43:19Z","citation":{"ista":"Baskett C, Schroeder L, Weber MG, Schemske DW. 2020. Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. Ecological Monographs. 90(1), e01397.","short":"C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs 90 (2020).","mla":"Baskett, Carina, et al. “Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory for a Tropical‐temperate Congener Pair.” <i>Ecological Monographs</i>, vol. 90, no. 1, e01397, Wiley, 2020, doi:<a href=\"https://doi.org/10.1002/ecm.1397\">10.1002/ecm.1397</a>.","ieee":"C. Baskett, L. Schroeder, M. G. Weber, and D. W. Schemske, “Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair,” <i>Ecological Monographs</i>, vol. 90, no. 1. Wiley, 2020.","chicago":"Baskett, Carina, Lucy Schroeder, Marjorie G. Weber, and Douglas W. Schemske. “Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory for a Tropical‐temperate Congener Pair.” <i>Ecological Monographs</i>. Wiley, 2020. <a href=\"https://doi.org/10.1002/ecm.1397\">https://doi.org/10.1002/ecm.1397</a>.","ama":"Baskett C, Schroeder L, Weber MG, Schemske DW. Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. <i>Ecological Monographs</i>. 2020;90(1). doi:<a href=\"https://doi.org/10.1002/ecm.1397\">10.1002/ecm.1397</a>","apa":"Baskett, C., Schroeder, L., Weber, M. G., &#38; Schemske, D. W. (2020). Multiple metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate congener pair. <i>Ecological Monographs</i>. Wiley. <a href=\"https://doi.org/10.1002/ecm.1397\">https://doi.org/10.1002/ecm.1397</a>"},"year":"2020","isi":1,"external_id":{"isi":["000508511600001"]},"doi":"10.1002/ecm.1397","day":"01","abstract":[{"text":"The biotic interactions hypothesis posits that biotic interactions are more important drivers of adaptation closer to the equator, evidenced by “stronger” contemporary interactions (e.g. greater interaction rates) and/or patterns of trait evolution consistent with a history of stronger interactions. Support for the hypothesis is mixed, but few studies span tropical and temperate regions while experimentally controlling for evolutionary history. Here, we integrate field observations and common garden experiments to quantify the relative importance of pollination and herbivory in a pair of tropical‐temperate congeneric perennial herbs. Phytolacca rivinoides and P. americana are pioneer species native to the Neotropics and the eastern USA, respectively. We compared plant‐pollinator and plant‐herbivore interactions between three tropical populations of P. rivinoides from Costa Rica and three temperate populations of P. americana from its northern range edge in Michigan and Ohio. For some metrics of interaction importance, we also included three subtropical populations of P. americana from its southern range edge in Florida. This approach confounds species and region but allows us, uniquely, to measure complementary proxies of interaction importance across a tropical‐temperate range in one system. To test the prediction that lower‐latitude plants are more reliant on insect pollinators, we quantified floral display and reward, insect visitation rates, and self‐pollination ability (autogamy). To test the prediction that lower‐latitude plants experience more herbivore pressure, we quantified herbivory rates, herbivore abundance, and leaf palatability. We found evidence supporting the biotic interactions hypothesis for most comparisons between P. rivinoides and north‐temperate P. americana (floral display, insect visitation, autogamy, herbivory, herbivore abundance, and young‐leaf palatability). Results for subtropical P. americana populations, however, were typically not intermediate between P. rivinoides and north‐temperate P. americana, as would be predicted by a linear latitudinal gradient in interaction importance. Subtropical young‐leaf palatability was intermediate, but subtropical mature leaves were the least palatable, and pollination‐related traits did not differ between temperate and subtropical regions. These nonlinear patterns of interaction importance suggest future work to relate interaction importance to climatic or biotic thresholds. In sum, we found that the biotic interactions hypothesis was more consistently supported at the larger spatial scale of our study.","lang":"eng"}],"volume":90,"ddc":["570"],"publication":"Ecological Monographs","has_accepted_license":"1","oa_version":"Published Version","project":[{"grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"month":"02","article_number":"e01397","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"date_published":"2020-02-01T00:00:00Z","type":"journal_article","publication_identifier":{"issn":["0012-9615"],"eissn":["1557-7015"]},"oa":1,"file":[{"file_id":"7469","creator":"dernst","access_level":"open_access","relation":"main_file","date_updated":"2020-07-14T12:47:54Z","content_type":"application/pdf","file_name":"2020_EcologMono_Baskett.pdf","date_created":"2020-02-10T08:18:14Z","file_size":537941,"checksum":"ab8130c6e68101f5a091d05324c36f08"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","status":"public"},{"ddc":["570"],"volume":11,"isi":1,"external_id":{"isi":["000551459000005"]},"date_updated":"2023-08-17T14:23:41Z","year":"2020","citation":{"ista":"Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. 2020. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. Nature Communications. 11, 195.","short":"S. Laukoter, R.J. Beattie, F. Pauler, N. Amberg, K.I. Nakayama, S. Hippenmeyer, Nature Communications 11 (2020).","mla":"Laukoter, Susanne, et al. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously Promotes Cell Survival in Cerebral Cortex Development.” <i>Nature Communications</i>, vol. 11, 195, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41467-019-14077-2\">10.1038/s41467-019-14077-2</a>.","ieee":"S. Laukoter, R. J. Beattie, F. Pauler, N. Amberg, K. I. Nakayama, and S. Hippenmeyer, “Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.","chicago":"Laukoter, Susanne, Robert J Beattie, Florian Pauler, Nicole Amberg, Keiichi I. Nakayama, and Simon Hippenmeyer. “Imprinted Cdkn1c Genomic Locus Cell-Autonomously Promotes Cell Survival in Cerebral Cortex Development.” <i>Nature Communications</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41467-019-14077-2\">https://doi.org/10.1038/s41467-019-14077-2</a>.","apa":"Laukoter, S., Beattie, R. J., Pauler, F., Amberg, N., Nakayama, K. I., &#38; Hippenmeyer, S. (2020). Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-019-14077-2\">https://doi.org/10.1038/s41467-019-14077-2</a>","ama":"Laukoter S, Beattie RJ, Pauler F, Amberg N, Nakayama KI, Hippenmeyer S. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development. <i>Nature Communications</i>. 2020;11. doi:<a href=\"https://doi.org/10.1038/s41467-019-14077-2\">10.1038/s41467-019-14077-2</a>"},"abstract":[{"lang":"eng","text":"The cyclin-dependent kinase inhibitor p57KIP2 is encoded by the imprinted Cdkn1c locus, exhibits maternal expression, and is essential for cerebral cortex development. How Cdkn1c regulates corticogenesis is however not clear. To this end we employ Mosaic Analysis with Double Markers (MADM) technology to genetically dissect Cdkn1c gene function in corticogenesis at single cell resolution. We find that the previously described growth-inhibitory Cdkn1c function is a non-cell-autonomous one, acting on the whole organism. In contrast we reveal a growth-promoting cell-autonomous Cdkn1c function which at the mechanistic level mediates radial glial progenitor cell and nascent projection neuron survival. Strikingly, the growth-promoting function of Cdkn1c is highly dosage sensitive but not subject to genomic imprinting. Collectively, our results suggest that the Cdkn1c locus regulates cortical development through distinct cell-autonomous and non-cell-autonomous mechanisms. More generally, our study highlights the importance to probe the relative contributions of cell intrinsic gene function and tissue-wide mechanisms to the overall phenotype."}],"doi":"10.1038/s41467-019-14077-2","day":"10","file_date_updated":"2020-07-14T12:47:54Z","quality_controlled":"1","ec_funded":1,"article_type":"original","publisher":"Springer Nature","author":[{"first_name":"Susanne","last_name":"Laukoter","orcid":"0000-0002-7903-3010","full_name":"Laukoter, Susanne","id":"2D6B7A9A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Beattie","first_name":"Robert J","full_name":"Beattie, Robert J","orcid":"0000-0002-8483-8753","id":"2E26DF60-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Pauler","first_name":"Florian","full_name":"Pauler, Florian","orcid":"0000-0002-7462-0048","id":"48EA0138-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Nicole","last_name":"Amberg","orcid":"0000-0002-3183-8207","full_name":"Amberg, Nicole","id":"4CD6AAC6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nakayama, Keiichi I.","last_name":"Nakayama","first_name":"Keiichi I."},{"first_name":"Simon","last_name":"Hippenmeyer","orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon","id":"37B36620-F248-11E8-B48F-1D18A9856A87"}],"_id":"7253","scopus_import":"1","title":"Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development","intvolume":"        11","publication_status":"published","department":[{"_id":"SiHi"}],"date_created":"2020-01-11T10:42:48Z","article_processing_charge":"No","status":"public","related_material":{"link":[{"description":"News on IST Homepage","relation":"press_release","url":"https://ist.ac.at/en/news/new-function-for-potential-tumour-suppressor-in-brain-development/"}]},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","file":[{"file_size":8063333,"checksum":"ebf1ed522f4e0be8d94c939c1806a709","date_created":"2020-01-13T07:42:31Z","content_type":"application/pdf","file_name":"2020_NatureComm_Laukoter.pdf","date_updated":"2020-07-14T12:47:54Z","access_level":"open_access","relation":"main_file","creator":"dernst","file_id":"7261"}],"date_published":"2020-01-10T00:00:00Z","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"oa":1,"publication_identifier":{"issn":["2041-1723"]},"language":[{"iso":"eng"}],"publication":"Nature Communications","has_accepted_license":"1","month":"01","article_number":"195","acknowledged_ssus":[{"_id":"PreCl"}],"oa_version":"Published Version","project":[{"name":"Role of Eed in neural stem cell lineage progression","grant_number":"T0101031","_id":"268F8446-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"grant_number":"M02416","name":"Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex","_id":"264E56E2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"H2020","_id":"260018B0-B435-11E9-9278-68D0E5697425","name":"Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development","grant_number":"725780"},{"name":"Mapping Cell-Type Specificity of the Genomic Imprintome in the Brain","grant_number":"LS13-002","_id":"25D92700-B435-11E9-9278-68D0E5697425"}]},{"author":[{"id":"40315C30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5227-4271","full_name":"Scarselli, Davide","first_name":"Davide","last_name":"Scarselli"}],"_id":"7258","title":"New approaches to reduce friction in turbulent pipe flow","alternative_title":["ISTA Thesis"],"publication_status":"published","department":[{"_id":"BjHo"}],"article_processing_charge":"No","date_created":"2020-01-12T16:07:26Z","file_date_updated":"2021-01-13T23:30:05Z","page":"174","ec_funded":1,"publisher":"Institute of Science and Technology Austria","date_updated":"2023-09-15T12:20:08Z","citation":{"apa":"Scarselli, D. (2020). <i>New approaches to reduce friction in turbulent pipe flow</i>. Institute of Science and Technology Austria. <a href=\"https://doi.org/10.15479/AT:ISTA:7258\">https://doi.org/10.15479/AT:ISTA:7258</a>","ama":"Scarselli D. New approaches to reduce friction in turbulent pipe flow. 2020. doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7258\">10.15479/AT:ISTA:7258</a>","chicago":"Scarselli, Davide. “New Approaches to Reduce Friction in Turbulent Pipe Flow.” Institute of Science and Technology Austria, 2020. <a href=\"https://doi.org/10.15479/AT:ISTA:7258\">https://doi.org/10.15479/AT:ISTA:7258</a>.","ieee":"D. Scarselli, “New approaches to reduce friction in turbulent pipe flow,” Institute of Science and Technology Austria, 2020.","mla":"Scarselli, Davide. <i>New Approaches to Reduce Friction in Turbulent Pipe Flow</i>. Institute of Science and Technology Austria, 2020, doi:<a href=\"https://doi.org/10.15479/AT:ISTA:7258\">10.15479/AT:ISTA:7258</a>.","short":"D. Scarselli, New Approaches to Reduce Friction in Turbulent Pipe Flow, Institute of Science and Technology Austria, 2020.","ista":"Scarselli D. 2020. New approaches to reduce friction in turbulent pipe flow. Institute of Science and Technology Austria."},"year":"2020","abstract":[{"lang":"eng","text":"Many flows encountered in nature and applications are characterized by a chaotic motion known as turbulence. Turbulent flows generate intense friction with pipe walls and are responsible for considerable amounts of energy losses at world scale. The nature of turbulent friction and techniques aimed at reducing it have been subject of extensive research over the last century, but no definite answer has been found yet. In this thesis we show that in pipes at moderate turbulent Reynolds numbers friction is better described by the power law first introduced by Blasius and not by the Prandtl–von Kármán formula. At higher Reynolds numbers, large scale motions gradually become more important in the flow and can be related to the change in scaling of friction. Next, we present a series of new techniques that can relaminarize turbulence by suppressing a key mechanism that regenerates it at walls, the lift–up effect. In addition, we investigate the process of turbulence decay in several experiments and discuss the drag reduction potential. Finally, we examine the behavior of friction under pulsating conditions inspired by the human heart cycle and we show that under such circumstances turbulent friction can be reduced to produce energy savings."}],"degree_awarded":"PhD","doi":"10.15479/AT:ISTA:7258","day":"13","ddc":["532"],"has_accepted_license":"1","month":"01","oa_version":"None","project":[{"call_identifier":"FP7","_id":"25152F3A-B435-11E9-9278-68D0E5697425","grant_number":"306589","name":"Decoding the complexity of turbulence at its origin"},{"grant_number":"737549","name":"Eliminating turbulence in oil pipelines","call_identifier":"H2020","_id":"25104D44-B435-11E9-9278-68D0E5697425"},{"_id":"25136C54-B435-11E9-9278-68D0E5697425","name":"Experimental studies of the turbulence transition and transport processes in turbulent Taylor-Couette currents","grant_number":"HO 4393/1-2"}],"language":[{"iso":"eng"}],"date_published":"2020-01-13T00:00:00Z","type":"dissertation","supervisor":[{"first_name":"Björn","last_name":"Hof","orcid":"0000-0003-2057-2754","full_name":"Hof, Björn","id":"3A374330-F248-11E8-B48F-1D18A9856A87"}],"oa":1,"publication_identifier":{"issn":["2663-337X"]},"status":"public","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"6228"},{"relation":"part_of_dissertation","id":"6486","status":"public"},{"status":"public","id":"461","relation":"part_of_dissertation"},{"status":"public","relation":"part_of_dissertation","id":"422"}]},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","file":[{"file_id":"7259","creator":"dscarsel","access_level":"closed","relation":"source_file","date_updated":"2021-01-13T23:30:05Z","content_type":"application/zip","file_name":"2020_Scarselli_Thesis.zip","date_created":"2020-01-12T15:57:14Z","embargo_to":"open_access","file_size":26640830,"checksum":"4df1ab24e9896635106adde5a54615bf"},{"file_size":8515844,"checksum":"48659ab98e3414293c7a721385c2fd1c","embargo":"2021-01-12","date_created":"2020-01-12T15:56:14Z","file_name":"2020_Scarselli_Thesis.pdf","content_type":"application/pdf","date_updated":"2021-01-13T23:30:05Z","access_level":"open_access","relation":"main_file","creator":"dscarsel","file_id":"7260"}]},{"file":[{"content_type":"application/pdf","file_name":"2020_NatureComm_Guseinov.pdf","date_updated":"2020-07-14T12:47:55Z","file_size":1315270,"checksum":"7db23fef2f4cda712f17f1004116ddff","date_created":"2020-01-15T14:35:34Z","creator":"rguseino","file_id":"7336","access_level":"open_access","relation":"main_file"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","related_material":{"link":[{"url":"https://ist.ac.at/en/news/geometry-meets-time/","description":"News on IST Homepage","relation":"press_release"}],"record":[{"relation":"dissertation_contains","id":"8366","status":"public"},{"status":"public","relation":"research_data","id":"7154"}]},"publication_identifier":{"issn":["2041-1723"]},"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"type":"journal_article","date_published":"2020-01-13T00:00:00Z","keyword":["Design","Synthesis and processing","Mechanical engineering","Polymers"],"language":[{"iso":"eng"}],"project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"},{"name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767","_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"oa_version":"Published Version","article_number":"237","month":"01","has_accepted_license":"1","publication":"Nature Communications","volume":11,"ddc":["000"],"day":"13","doi":"10.1038/s41467-019-14015-2","abstract":[{"lang":"eng","text":"Advances in shape-morphing materials, such as hydrogels, shape-memory polymers and light-responsive polymers have enabled prescribing self-directed deformations of initially flat geometries. However, most proposed solutions evolve towards a target geometry without considering time-dependent actuation paths. To achieve more complex geometries and avoid self-collisions, it is critical to encode a spatial and temporal shape evolution within the initially flat shell. Recent realizations of time-dependent morphing are limited to the actuation of few, discrete hinges and cannot form doubly curved surfaces. Here, we demonstrate a method for encoding temporal shape evolution in architected shells that assume complex shapes and doubly curved geometries. The shells are non-periodic tessellations of pre-stressed contractile unit cells that soften in water at rates prescribed locally by mesostructure geometry. The ensuing midplane contraction is coupled to the formation of encoded curvatures. We propose an inverse design tool based on a data-driven model for unit cells’ temporal responses."}],"year":"2020","citation":{"ista":"Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. 2020. Programming temporal morphing of self-actuated shells. Nature Communications. 11, 237.","mla":"Guseinov, Ruslan, et al. “Programming Temporal Morphing of Self-Actuated Shells.” <i>Nature Communications</i>, vol. 11, 237, Springer Nature, 2020, doi:<a href=\"https://doi.org/10.1038/s41467-019-14015-2\">10.1038/s41467-019-14015-2</a>.","short":"R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, B. Bickel, Nature Communications 11 (2020).","ieee":"R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, and B. Bickel, “Programming temporal morphing of self-actuated shells,” <i>Nature Communications</i>, vol. 11. Springer Nature, 2020.","chicago":"Guseinov, Ruslan, Connor McMahan, Jesus Perez Rodriguez, Chiara Daraio, and Bernd Bickel. “Programming Temporal Morphing of Self-Actuated Shells.” <i>Nature Communications</i>. Springer Nature, 2020. <a href=\"https://doi.org/10.1038/s41467-019-14015-2\">https://doi.org/10.1038/s41467-019-14015-2</a>.","ama":"Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. Programming temporal morphing of self-actuated shells. <i>Nature Communications</i>. 2020;11. doi:<a href=\"https://doi.org/10.1038/s41467-019-14015-2\">10.1038/s41467-019-14015-2</a>","apa":"Guseinov, R., McMahan, C., Perez Rodriguez, J., Daraio, C., &#38; Bickel, B. (2020). Programming temporal morphing of self-actuated shells. <i>Nature Communications</i>. Springer Nature. <a href=\"https://doi.org/10.1038/s41467-019-14015-2\">https://doi.org/10.1038/s41467-019-14015-2</a>"},"date_updated":"2024-02-21T12:45:02Z","external_id":{"isi":["000511916800015"]},"isi":1,"publisher":"Springer Nature","article_type":"original","quality_controlled":"1","ec_funded":1,"file_date_updated":"2020-07-14T12:47:55Z","department":[{"_id":"BeBi"}],"date_created":"2020-01-13T16:54:26Z","article_processing_charge":"No","publication_status":"published","intvolume":"        11","title":"Programming temporal morphing of self-actuated shells","scopus_import":"1","_id":"7262","author":[{"last_name":"Guseinov","first_name":"Ruslan","full_name":"Guseinov, Ruslan","orcid":"0000-0001-9819-5077","id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87"},{"full_name":"McMahan, Connor","last_name":"McMahan","first_name":"Connor"},{"id":"2DC83906-F248-11E8-B48F-1D18A9856A87","full_name":"Perez Rodriguez, Jesus","first_name":"Jesus","last_name":"Perez Rodriguez"},{"full_name":"Daraio, Chiara","last_name":"Daraio","first_name":"Chiara"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","full_name":"Bickel, Bernd","first_name":"Bernd","last_name":"Bickel"}]},{"quality_controlled":"1","page":"295-306","language":[{"iso":"eng"}],"publisher":"USENIX Association","conference":{"end_date":"2018-07-13","location":"Boston, MA, United States","name":"USENIX: Annual Technical Conference","start_date":"2018-07-11"},"scopus_import":"1","publication":"Proceedings of the 2018 USENIX Annual Technical Conference","_id":"7272","author":[{"last_name":"Arbel-Raviv","first_name":"Maya","full_name":"Arbel-Raviv, Maya"},{"id":"3569F0A0-F248-11E8-B48F-1D18A9856A87","full_name":"Brown, Trevor A","last_name":"Brown","first_name":"Trevor A"},{"first_name":"Adam","last_name":"Morrison","full_name":"Morrison, Adam"}],"article_processing_charge":"No","department":[{"_id":"DaAl"}],"project":[{"name":"NSERC Postdoctoral fellowship","_id":"26450934-B435-11E9-9278-68D0E5697425"}],"date_created":"2020-01-14T07:27:08Z","publication_status":"published","oa_version":"Published Version","month":"01","title":"Getting to the root of concurrent binary search tree performance","main_file_link":[{"url":"https://www.usenix.org/system/files/conference/atc18/atc18-arbel-raviv.pdf","open_access":"1"}],"ddc":["000"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","year":"2020","citation":{"mla":"Arbel-Raviv, Maya, et al. “Getting to the Root of Concurrent Binary Search Tree Performance.” <i>Proceedings of the 2018 USENIX Annual Technical Conference</i>, USENIX Association, 2020, pp. 295–306.","short":"M. Arbel-Raviv, T.A. Brown, A. Morrison, in:, Proceedings of the 2018 USENIX Annual Technical Conference, USENIX Association, 2020, pp. 295–306.","ista":"Arbel-Raviv M, Brown TA, Morrison A. 2020. Getting to the root of concurrent binary search tree performance. Proceedings of the 2018 USENIX Annual Technical Conference. USENIX: Annual Technical Conference, 295–306.","apa":"Arbel-Raviv, M., Brown, T. A., &#38; Morrison, A. (2020). Getting to the root of concurrent binary search tree performance. In <i>Proceedings of the 2018 USENIX Annual Technical Conference</i> (pp. 295–306). Boston, MA, United States: USENIX Association.","ama":"Arbel-Raviv M, Brown TA, Morrison A. Getting to the root of concurrent binary search tree performance. In: <i>Proceedings of the 2018 USENIX Annual Technical Conference</i>. USENIX Association; 2020:295-306.","ieee":"M. Arbel-Raviv, T. A. Brown, and A. Morrison, “Getting to the root of concurrent binary search tree performance,” in <i>Proceedings of the 2018 USENIX Annual Technical Conference</i>, Boston, MA, United States, 2020, pp. 295–306.","chicago":"Arbel-Raviv, Maya, Trevor A Brown, and Adam Morrison. “Getting to the Root of Concurrent Binary Search Tree Performance.” In <i>Proceedings of the 2018 USENIX Annual Technical Conference</i>, 295–306. USENIX Association, 2020."},"date_updated":"2021-01-11T15:25:48Z","type":"conference","date_published":"2020-01-01T00:00:00Z","day":"01","publication_identifier":{"isbn":["9781939133021"]},"oa":1,"abstract":[{"lang":"eng","text":"Many systems rely on optimistic concurrent search trees for multi-core scalability. In principle, optimistic trees have a simple performance story: searches are read-only and so run in parallel, with writes to shared memory occurring only when modifying the data structure. However, this paper shows that in practice, obtaining the full performance benefits of optimistic search trees is not so simple.\r\n\r\nWe focus on optimistic binary search trees (BSTs) and perform a detailed performance analysis of 10 state-of-the-art BSTs on large scale x86-64 hardware, using both microbenchmarks and an in-memory database system. We find and explain significant unexpected performance differences between BSTs with similar tree structure and search implementations, which we trace to subtle performance-degrading interactions of BSTs with systems software and hardware subsystems. We further derive a prescriptive approach to avoid this performance degradation, as well as algorithmic insights on optimistic BST design. Our work underlines the gap between the theory and practice of multi-core performance, and calls for further research to help bridge this gap."}]},{"publication_identifier":{"eissn":["15292401"]},"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)"},"date_published":"2020-01-02T00:00:00Z","type":"journal_article","file":[{"content_type":"application/pdf","file_name":"2020_JourNeuroscience_Piriya.pdf","date_updated":"2020-07-14T12:47:56Z","file_size":4460781,"checksum":"92f5e8a47f454fc131fb94cd7f106e60","date_created":"2020-01-20T14:44:10Z","creator":"dernst","file_id":"7345","relation":"main_file","access_level":"open_access"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","oa_version":"Published Version","month":"01","publication":"Journal of neuroscience","has_accepted_license":"1","language":[{"iso":"eng"}],"doi":"10.1523/JNEUROSCI.1571-19.2019","day":"02","abstract":[{"lang":"eng","text":"Cytoskeletal filaments such as microtubules (MTs) and filamentous actin (F-actin) dynamically support cell structure and functions. In central presynaptic terminals, F-actin is expressed along the release edge and reportedly plays diverse functional roles, but whether axonal MTs extend deep into terminals and play any physiological role remains controversial. At the calyx of Held in rats of either sex, confocal and high-resolution microscopy revealed that MTs enter deep into presynaptic terminal swellings and partially colocalize with a subset of synaptic vesicles (SVs). Electrophysiological analysis demonstrated that depolymerization of MTs specifically prolonged the slow-recovery time component of EPSCs from short-term depression induced by a train of high-frequency stimulation, whereas depolymerization of F-actin specifically prolonged the fast-recovery component. In simultaneous presynaptic and postsynaptic action potential recordings, depolymerization of MTs or F-actin significantly impaired the fidelity of high-frequency neurotransmission. We conclude that MTs and F-actin differentially contribute to slow and fast SV replenishment, thereby maintaining high-frequency neurotransmission."}],"date_updated":"2023-08-17T14:25:23Z","citation":{"ista":"Piriya Ananda Babu L, Wang HY, Eguchi K, Guillaud L, Takahashi T. 2020. Microtubule and actin differentially regulate synaptic vesicle cycling to maintain high-frequency neurotransmission. Journal of neuroscience. 40(1), 131–142.","mla":"Piriya Ananda Babu, Lashmi, et al. “Microtubule and Actin Differentially Regulate Synaptic Vesicle Cycling to Maintain High-Frequency Neurotransmission.” <i>Journal of Neuroscience</i>, vol. 40, no. 1, Society for Neuroscience, 2020, pp. 131–42, doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.1571-19.2019\">10.1523/JNEUROSCI.1571-19.2019</a>.","short":"L. Piriya Ananda Babu, H.Y. Wang, K. Eguchi, L. Guillaud, T. Takahashi, Journal of Neuroscience 40 (2020) 131–142.","chicago":"Piriya Ananda Babu, Lashmi, Han Ying Wang, Kohgaku Eguchi, Laurent Guillaud, and Tomoyuki Takahashi. “Microtubule and Actin Differentially Regulate Synaptic Vesicle Cycling to Maintain High-Frequency Neurotransmission.” <i>Journal of Neuroscience</i>. Society for Neuroscience, 2020. <a href=\"https://doi.org/10.1523/JNEUROSCI.1571-19.2019\">https://doi.org/10.1523/JNEUROSCI.1571-19.2019</a>.","ieee":"L. Piriya Ananda Babu, H. Y. Wang, K. Eguchi, L. Guillaud, and T. Takahashi, “Microtubule and actin differentially regulate synaptic vesicle cycling to maintain high-frequency neurotransmission,” <i>Journal of neuroscience</i>, vol. 40, no. 1. Society for Neuroscience, pp. 131–142, 2020.","ama":"Piriya Ananda Babu L, Wang HY, Eguchi K, Guillaud L, Takahashi T. Microtubule and actin differentially regulate synaptic vesicle cycling to maintain high-frequency neurotransmission. <i>Journal of neuroscience</i>. 2020;40(1):131-142. doi:<a href=\"https://doi.org/10.1523/JNEUROSCI.1571-19.2019\">10.1523/JNEUROSCI.1571-19.2019</a>","apa":"Piriya Ananda Babu, L., Wang, H. Y., Eguchi, K., Guillaud, L., &#38; Takahashi, T. (2020). Microtubule and actin differentially regulate synaptic vesicle cycling to maintain high-frequency neurotransmission. <i>Journal of Neuroscience</i>. Society for Neuroscience. <a href=\"https://doi.org/10.1523/JNEUROSCI.1571-19.2019\">https://doi.org/10.1523/JNEUROSCI.1571-19.2019</a>"},"year":"2020","isi":1,"external_id":{"isi":["000505167600013"],"pmid":["31767677"]},"volume":40,"ddc":["570"],"publication_status":"published","department":[{"_id":"RySh"}],"date_created":"2020-01-19T23:00:38Z","article_processing_charge":"No","title":"Microtubule and actin differentially regulate synaptic vesicle cycling to maintain high-frequency neurotransmission","intvolume":"        40","_id":"7339","pmid":1,"scopus_import":"1","author":[{"first_name":"Lashmi","last_name":"Piriya Ananda Babu","full_name":"Piriya Ananda Babu, Lashmi"},{"full_name":"Wang, Han Ying","last_name":"Wang","first_name":"Han Ying"},{"first_name":"Kohgaku","last_name":"Eguchi","orcid":"0000-0002-6170-2546","full_name":"Eguchi, Kohgaku","id":"2B7846DC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Guillaud, Laurent","last_name":"Guillaud","first_name":"Laurent"},{"last_name":"Takahashi","first_name":"Tomoyuki","full_name":"Takahashi, Tomoyuki"}],"issue":"1","publisher":"Society for Neuroscience","article_type":"original","page":"131-142","quality_controlled":"1","file_date_updated":"2020-07-14T12:47:56Z"},{"language":[{"iso":"eng"}],"month":"03","oa_version":"Published Version","acknowledged_ssus":[{"_id":"LifeSc"}],"project":[{"call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","name":"International IST Postdoc Fellowship Programme"},{"grant_number":"CR-118/3-1","name":"Host-Parasite Coevolution","_id":"25DAF0B2-B435-11E9-9278-68D0E5697425"}],"publication":"Ecology Letters","has_accepted_license":"1","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","related_material":{"link":[{"url":"https://ist.ac.at/en/news/social-ants-shapes-disease-outcome/","description":"News on IST Homepage","relation":"press_release"}],"record":[{"status":"public","id":"13060","relation":"research_data"}]},"status":"public","file":[{"date_updated":"2020-11-19T11:27:10Z","file_name":"2020_EcologyLetters_Milutinovic.pdf","content_type":"application/pdf","date_created":"2020-11-19T11:27:10Z","file_size":561749,"checksum":"0cd8be386fa219db02845b7c3991ce04","file_id":"8776","creator":"dernst","success":1,"relation":"main_file","access_level":"open_access"}],"oa":1,"publication_identifier":{"issn":["1461-023X"],"eissn":["1461-0248"]},"date_published":"2020-03-01T00:00:00Z","type":"journal_article","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode"},"article_type":"letter_note","publisher":"Wiley","file_date_updated":"2020-11-19T11:27:10Z","page":"565-574","quality_controlled":"1","ec_funded":1,"title":"Social immunity modulates competition between coinfecting pathogens","intvolume":"        23","publication_status":"published","department":[{"_id":"SyCr"},{"_id":"KrCh"}],"article_processing_charge":"Yes (via OA deal)","date_created":"2020-01-20T13:32:12Z","author":[{"last_name":"Milutinovic","first_name":"Barbara","full_name":"Milutinovic, Barbara","orcid":"0000-0002-8214-4758","id":"2CDC32B8-F248-11E8-B48F-1D18A9856A87"},{"id":"42462816-F248-11E8-B48F-1D18A9856A87","first_name":"Miriam","last_name":"Stock","full_name":"Stock, Miriam"},{"id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V","last_name":"Grasse","full_name":"Grasse, Anna V"},{"full_name":"Naderlinger, Elisabeth","first_name":"Elisabeth","last_name":"Naderlinger","id":"31757262-F248-11E8-B48F-1D18A9856A87"},{"id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","full_name":"Hilbe, Christian","orcid":"0000-0001-5116-955X","last_name":"Hilbe","first_name":"Christian"},{"full_name":"Cremer, Sylvia","orcid":"0000-0002-2193-3868","last_name":"Cremer","first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"}],"issue":"3","_id":"7343","scopus_import":"1","ddc":["570"],"volume":23,"acknowledgement":"We thank Bernhardt Steinwender and Jorgen Eilenberg for the fungal strains, Xavier Espadaler, Mireia Diaz, Christiane Wanke, Lumi Viljakainen and the Social Immunity Team at IST Austria, for help with ant collection, and Wanda Gorecka and Gertraud Stift of the IST Austria Life Science Facility for technical support. We are thankful to Dieter Ebert for input at all stages of the project, Roger Mundry for statistical advice, Hinrich Schulenburg, Paul Schmid-Hempel, Yuko\r\nUlrich and Joachim Kurtz for project discussion, Bor Kavcic for advice on growth curves, Marcus Roper for advice on modelling work and comments on the manuscript, as well as Marjon de Vos, Weini Huang and the Social Immunity Team for comments on the manuscript.\r\nThis study was funded by the German Research Foundation (DFG) within the Priority Programme 1399 Host-parasite Coevolution (CR 118/3 to S.C.) and the People Programme\r\n(Marie Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013) under REA grant agreement no 291734 (ISTFELLOW to B.M.). ","abstract":[{"text":"Coinfections with multiple pathogens can result in complex within‐host dynamics affecting virulence and transmission. While multiple infections are intensively studied in solitary hosts, it is so far unresolved how social host interactions interfere with pathogen competition, and if this depends on coinfection diversity. We studied how the collective disease defences of ants – their social immunity – influence pathogen competition in coinfections of same or different fungal pathogen species. Social immunity reduced virulence for all pathogen combinations, but interfered with spore production only in different‐species coinfections. Here, it decreased overall pathogen sporulation success while increasing co‐sporulation on individual cadavers and maintaining a higher pathogen diversity at the community level. Mathematical modelling revealed that host sanitary care alone can modulate competitive outcomes between pathogens, giving advantage to fast‐germinating, thus less grooming‐sensitive ones. Host social interactions can hence modulate infection dynamics in coinfected group members, thereby altering pathogen communities at the host level and population level.","lang":"eng"}],"doi":"10.1111/ele.13458","day":"01","isi":1,"external_id":{"isi":["000507515900001"]},"date_updated":"2023-09-05T16:04:49Z","year":"2020","citation":{"chicago":"Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger, Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between Coinfecting Pathogens.” <i>Ecology Letters</i>. Wiley, 2020. <a href=\"https://doi.org/10.1111/ele.13458\">https://doi.org/10.1111/ele.13458</a>.","ieee":"B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer, “Social immunity modulates competition between coinfecting pathogens,” <i>Ecology Letters</i>, vol. 23, no. 3. Wiley, pp. 565–574, 2020.","apa":"Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., &#38; Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens. <i>Ecology Letters</i>. Wiley. <a href=\"https://doi.org/10.1111/ele.13458\">https://doi.org/10.1111/ele.13458</a>","ama":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social immunity modulates competition between coinfecting pathogens. <i>Ecology Letters</i>. 2020;23(3):565-574. doi:<a href=\"https://doi.org/10.1111/ele.13458\">10.1111/ele.13458</a>","ista":"Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020. Social immunity modulates competition between coinfecting pathogens. Ecology Letters. 23(3), 565–574.","short":"B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer, Ecology Letters 23 (2020) 565–574.","mla":"Milutinovic, Barbara, et al. “Social Immunity Modulates Competition between Coinfecting Pathogens.” <i>Ecology Letters</i>, vol. 23, no. 3, Wiley, 2020, pp. 565–74, doi:<a href=\"https://doi.org/10.1111/ele.13458\">10.1111/ele.13458</a>."}}]