@inproceedings{2048,
  abstract     = {Leakage resilient cryptography attempts to incorporate side-channel leakage into the black-box security model and designs cryptographic schemes that are provably secure within it. Informally, a scheme is leakage-resilient if it remains secure even if an adversary learns a bounded amount of arbitrary information about the schemes internal state. Unfortunately, most leakage resilient schemes are unnecessarily complicated in order to achieve strong provable security guarantees. As advocated by Yu et al. [CCS’10], this mostly is an artefact of the security proof and in practice much simpler construction may already suffice to protect against realistic side-channel attacks. In this paper, we show that indeed for simpler constructions leakage-resilience can be obtained when we aim for relaxed security notions where the leakage-functions and/or the inputs to the primitive are chosen non-adaptively. For example, we show that a three round Feistel network instantiated with a leakage resilient PRF yields a leakage resilient PRP if the inputs are chosen non-adaptively (This complements the result of Dodis and Pietrzak [CRYPTO’10] who show that if a adaptive queries are allowed, a superlogarithmic number of rounds is necessary.) We also show that a minor variation of the classical GGM construction gives a leakage resilient PRF if both, the leakage-function and the inputs, are chosen non-adaptively.},
  author       = {Faust, Sebastian and Pietrzak, Krzysztof Z and Schipper, Joachim},
  booktitle    = { Conference proceedings CHES 2012},
  location     = {Leuven, Belgium},
  pages        = {213 -- 232},
  publisher    = {Springer},
  title        = {{Practical leakage-resilient symmetric cryptography}},
  doi          = {10.1007/978-3-642-33027-8_13},
  volume       = {7428},
  year         = {2012},
}

@inproceedings{2049,
  abstract     = {We propose a new authentication protocol that is provably secure based on a ring variant of the learning parity with noise (LPN) problem. The protocol follows the design principle of the LPN-based protocol from Eurocrypt’11 (Kiltz et al.), and like it, is a two round protocol secure against active attacks. Moreover, our protocol has small communication complexity and a very small footprint which makes it applicable in scenarios that involve low-cost, resource-constrained devices.

Performance-wise, our protocol is more efficient than previous LPN-based schemes, such as the many variants of the Hopper-Blum (HB) protocol and the aforementioned protocol from Eurocrypt’11. Our implementation results show that it is even comparable to the standard challenge-and-response protocols based on the AES block-cipher. Our basic protocol is roughly 20 times slower than AES, but with the advantage of having 10 times smaller code size. Furthermore, if a few hundred bytes of non-volatile memory are available to allow the storage of some off-line pre-computations, then the online phase of our protocols is only twice as slow as AES.
},
  author       = {Heyse, Stefan and Kiltz, Eike and Lyubashevsky, Vadim and Paar, Christof and Pietrzak, Krzysztof Z},
  booktitle    = { Conference proceedings FSE 2012},
  location     = {Washington, DC, USA},
  pages        = {346 -- 365},
  publisher    = {Springer},
  title        = {{Lapin: An efficient authentication protocol based on ring-LPN}},
  doi          = {10.1007/978-3-642-34047-5_20},
  volume       = {7549},
  year         = {2012},
}

@inproceedings{1384,
  abstract     = {Software model checking, as an undecidable problem, has three possible outcomes: (1) the program satisfies the specification, (2) the program does not satisfy the specification, and (3) the model checker fails. The third outcome usually manifests itself in a space-out, time-out, or one component of the verification tool giving up; in all of these failing cases, significant computation is performed by the verification tool before the failure, but no result is reported. We propose to reformulate the model-checking problem as follows, in order to have the verification tool report a summary of the performed work even in case of failure: given a program and a specification, the model checker returns a condition Ψ - usually a state predicate - such that the program satisfies the specification under the condition Ψ - that is, as long as the program does not leave the states in which Ψ is satisfied. In our experiments, we investigated as one major application of conditional model checking the sequential combination of model checkers with information passing. We give the condition that one model checker produces, as input to a second conditional model checker, such that the verification problem for the second is restricted to the part of the state space that is not covered by the condition, i.e., the second model checker works on the problems that the first model checker could not solve. Our experiments demonstrate that repeated application of conditional model checkers, passing information from one model checker to the next, can significantly improve the verification results and performance, i.e., we can now verify programs that we could not verify before.},
  author       = {Beyer, Dirk and Henzinger, Thomas A and Keremoglu, Mehmet and Wendler, Philipp},
  booktitle    = {Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering},
  location     = {Cary, NC, USA},
  publisher    = {ACM},
  title        = {{Conditional model checking: A technique to pass information between verifiers}},
  doi          = {10.1145/2393596.2393664},
  year         = {2012},
}

@misc{5396,
  abstract     = {We consider the problem of inference in agraphical model with binary variables. While in theory it is arguably preferable to compute marginal probabilities, in practice researchers often use MAP inference due to the availability of efficient discrete optimization algorithms. We bridge the gap between the two approaches by introducing the Discrete  Marginals technique in which approximate marginals are obtained by minimizing an objective function with unary and pair-wise terms over a discretized domain. This allows the use of techniques originally devel-oped for MAP-MRF inference and learning. We explore two ways to set up the objective function - by discretizing the Bethe free energy and by learning it  from training data. Experimental results show that for certain types of graphs a learned function can out-perform the  Bethe approximation. We also establish a link between the Bethe free energy and submodular functions.},
  author       = {Korc, Filip and Kolmogorov, Vladimir and Lampert, Christoph},
  issn         = {2664-1690},
  pages        = {13},
  publisher    = {IST Austria},
  title        = {{Approximating marginals using discrete energy minimization}},
  doi          = {10.15479/AT:IST-2012-0003},
  year         = {2012},
}

@techreport{5398,
  abstract     = {This document is created as a part of the project “Repository for Research Data on IST Austria”. It summarises the actual state of research data at IST Austria, based on survey results. It supports the choice of appropriate software, which would best fit the requirements of their users, the researchers.},
  author       = {Porsche, Jana},
  publisher    = {IST Austria},
  title        = {{Actual state of research data @ ISTAustria}},
  year         = {2012},
}

@inbook{5745,
  author       = {Gupta, Ashutosh},
  booktitle    = {Automated Technology for Verification and Analysis},
  isbn         = {9783642333859},
  issn         = {1611-3349},
  location     = {Thiruvananthapuram, Kerala, India},
  pages        = {107--121},
  publisher    = {Springer Berlin Heidelberg},
  title        = {{Improved Single Pass Algorithms for Resolution Proof Reduction}},
  doi          = {10.1007/978-3-642-33386-6_10},
  volume       = {7561},
  year         = {2012},
}

@article{6588,
  abstract     = {First we note that the best polynomial approximation to vertical bar x vertical bar on the set, which consists of an interval on the positive half-axis and a point on the negative half-axis, can be given by means of the classical Chebyshev polynomials. Then we explore the cases when a solution of the related problem on two intervals can be given in elementary functions.},
  author       = {Pausinger, Florian},
  issn         = {1812-9471},
  journal      = {Journal of Mathematical Physics, Analysis, Geometry},
  number       = {1},
  pages        = {63--78},
  publisher    = {B. Verkin Institute for Low Temperature Physics and Engineering},
  title        = {{Elementary solutions of the Bernstein problem on two intervals}},
  volume       = {8},
  year         = {2012},
}

@article{9451,
  abstract     = {The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes DNA demethylation before fertilization, but the targeting preferences, mechanism, and biological significance of this process remain unclear. Here, we show that active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for all of the demethylation in the central cell and preferentially targets small, AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation of similar sequences, and lack of DEMETER in vegetative cells causes reduced small RNA–directed DNA methylation of transposons in sperm. Our results demonstrate that demethylation in companion cells reinforces transposon methylation in plant gametes and likely contributes to stable silencing of transposable elements across generations.},
  author       = {Ibarra, Christian A. and Feng, Xiaoqi and Schoft, Vera K. and Hsieh, Tzung-Fu and Uzawa, Rie and Rodrigues, Jessica A. and Zemach, Assaf and Chumak, Nina and Machlicova, Adriana and Nishimura, Toshiro and Rojas, Denisse and Fischer, Robert L. and Tamaru, Hisashi and Zilberman, Daniel},
  issn         = {1095-9203},
  journal      = {Science},
  number       = {6100},
  pages        = {1360--1364},
  publisher    = {American Association for the Advancement of Science},
  title        = {{Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes}},
  doi          = {10.1126/science.1224839},
  volume       = {337},
  year         = {2012},
}

@article{9497,
  abstract     = {The regulation of eukaryotic chromatin relies on interactions between many epigenetic factors, including histone modifications, DNA methylation, and the incorporation of histone variants. H2A.Z, one of the most conserved but enigmatic histone variants that is enriched at the transcriptional start sites of genes, has been implicated in a variety of chromosomal processes. Recently, we reported a genome-wide anticorrelation between H2A.Z and DNA methylation, an epigenetic hallmark of heterochromatin that has also been found in the bodies of active genes in plants and animals. Here, we investigate the basis of this anticorrelation using a novel h2a.z loss-of-function line in Arabidopsis thaliana. Through genome-wide bisulfite sequencing, we demonstrate that loss of H2A.Z in Arabidopsis has only a minor effect on the level or profile of DNA methylation in genes, and we propose that the global anticorrelation between DNA methylation and H2A.Z is primarily caused by the exclusion of H2A.Z from methylated DNA. RNA sequencing and genomic mapping of H2A.Z show that H2A.Z enrichment across gene bodies, rather than at the TSS, is correlated with lower transcription levels and higher measures of gene responsiveness. Loss of H2A.Z causes misregulation of many genes that are disproportionately associated with response to environmental and developmental stimuli. We propose that H2A.Z deposition in gene bodies promotes variability in levels and patterns of gene expression, and that a major function of genic DNA methylation is to exclude H2A.Z from constitutively expressed genes.},
  author       = {Coleman-Derr, Devin and Zilberman, Daniel},
  issn         = {1553-7404},
  journal      = {PLoS Genetics},
  number       = {10},
  publisher    = {Public Library of Science},
  title        = {{Deposition of histone variant H2A.Z within gene bodies regulates responsive genes}},
  doi          = {10.1371/journal.pgen.1002988},
  volume       = {8},
  year         = {2012},
}

@article{9499,
  abstract     = {EMBRYONIC FLOWER1 (EMF1) is a plant-specific gene crucial to Arabidopsis vegetative development. Loss of function mutants in the EMF1 gene mimic the phenotype caused by mutations in Polycomb Group protein (PcG) genes, which encode epigenetic repressors that regulate many aspects of eukaryotic development. In Arabidopsis, Polycomb Repressor Complex 2 (PRC2), made of PcG proteins, catalyzes trimethylation of lysine 27 on histone H3 (H3K27me3) and PRC1-like proteins catalyze H2AK119 ubiquitination. Despite functional similarity to PcG proteins, EMF1 lacks sequence homology with known PcG proteins; thus, its role in the PcG mechanism is unclear. To study the EMF1 functions and its mechanism of action, we performed genome-wide mapping of EMF1 binding and H3K27me3 modification sites in Arabidopsis seedlings. The EMF1 binding pattern is similar to that of H3K27me3 modification on the chromosomal and genic level. ChIPOTLe peak finding and clustering analyses both show that the highly trimethylated genes also have high enrichment levels of EMF1 binding, termed EMF1_K27 genes. EMF1 interacts with regulatory genes, which are silenced to allow vegetative growth, and with genes specifying cell fates during growth and differentiation. H3K27me3 marks not only these genes but also some genes that are involved in endosperm development and maternal effects. Transcriptome analysis, coupled with the H3K27me3 pattern, of EMF1_K27 genes in emf1 and PRC2 mutants showed that EMF1 represses gene activities via diverse mechanisms and plays a novel role in the PcG mechanism.},
  author       = {Kim, Sang Yeol and Lee, Jungeun and Eshed-Williams, Leor and Zilberman, Daniel and Sung, Z. Renee},
  issn         = {1553-7404},
  journal      = {PLoS Genetics},
  number       = {3},
  publisher    = {Public Library of Science},
  title        = {{EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development}},
  doi          = {10.1371/journal.pgen.1002512},
  volume       = {8},
  year         = {2012},
}

@article{9528,
  abstract     = {Accumulating evidence points toward diverse functions for plant chromatin. Remarkable progress has been made over the last few years in elucidating the mechanisms for a number of these functions. Activity of the histone demethylase IBM1 accurately targets DNA methylation to silent repeats and transposable elements, not to genes. A genetic screen uncovered the surprising role of H2A.Z-containing nucleosomes in sensing precise differences in ambient temperature and consequent gene regulation. Precise maintenance of chromosome number is assured by a histone modification that suppresses inappropriate DNA replication and by centromeric histone H3 regulation of chromosome segregation. Histones and noncoding RNAs regulate FLOWERING LOCUS C, the expression of which quantitatively measures the duration of cold exposure, functioning as memory of winter. These findings are a testament to the power of using plants to research chromatin organization, and demonstrate examples of how chromatin functions to achieve biological accuracy, precision, and memory.},
  author       = {Huff, Jason T. and Zilberman, Daniel},
  issn         = {0959-437X},
  journal      = {Current Opinion in Genetics and Development},
  number       = {2},
  pages        = {132--138},
  publisher    = {Elsevier},
  title        = {{Regulation of biological accuracy, precision, and memory by plant chromatin organization}},
  doi          = {10.1016/j.gde.2012.01.007},
  volume       = {22},
  year         = {2012},
}

@article{9535,
  abstract     = {The most well-studied function of DNA methylation in eukaryotic cells is the transcriptional silencing of genes and transposons. More recent results showed that many eukaryotes methylate the bodies of genes as well and that this methylation correlates with transcriptional activity rather than repression. The purpose of gene body methylation remains mysterious, but is potentially related to the histone variant H2A.Z. Studies in plants and animals have shown that the genome-wide distributions of H2A.Z and DNA methylation are strikingly anticorrelated. Furthermore, we and other investigators have shown that this relationship is likely to be the result of an ancient but unknown mechanism by which DNA methylation prevents the incorporation of H2A.Z. Recently, we discovered strong correlations between the presence of H2A.Z within gene bodies, the degree to which a gene's expression varies across tissue types or environmental conditions, and transcriptional misregulation in an h2a.z mutant. We propose that one basal function of gene body methylation is the establishment of constitutive expression patterns within housekeeping genes by excluding H2A.Z from their bodies.},
  author       = {Coleman-Derr, D. and Zilberman, Daniel},
  issn         = {1943-4456},
  journal      = {Cold Spring Harbor Symposia on Quantitative Biology},
  pages        = {147--154},
  publisher    = {Cold Spring Harbor Laboratory Press},
  title        = {{DNA methylation, H2A.Z, and the regulation of constitutive expression}},
  doi          = {10.1101/sqb.2012.77.014944},
  volume       = {77},
  year         = {2012},
}

@misc{9755,
  abstract     = {Due to the omnipresent risk of epidemics, insect societies have evolved sophisticated disease defences at the individual and colony level. An intriguing yet little understood phenomenon is that social contact to pathogen-exposed individuals reduces susceptibility of previously naive nestmates to this pathogen. We tested whether such social immunisation in Lasius ants against the entomopathogenic fungus Metarhizium anisopliae is based on active upregulation of the immune system of nestmates following contact to an infectious individual or passive protection via transfer of immune effectors among group members—that is, active versus passive immunisation. We found no evidence for involvement of passive immunisation via transfer of antimicrobials among colony members. Instead, intensive allogrooming behaviour between naive and pathogen-exposed ants before fungal conidia firmly attached to their cuticle suggested passage of the pathogen from the exposed individuals to their nestmates. By tracing fluorescence-labelled conidia we indeed detected frequent pathogen transfer to the nestmates, where they caused low-level infections as revealed by growth of small numbers of fungal colony forming units from their dissected body content. These infections rarely led to death, but instead promoted an enhanced ability to inhibit fungal growth and an active upregulation of immune genes involved in antifungal defences (defensin and prophenoloxidase, PPO). Contrarily, there was no upregulation of the gene cathepsin L, which is associated with antibacterial and antiviral defences, and we found no increased antibacterial activity of nestmates of fungus-exposed ants. This indicates that social immunisation after fungal exposure is specific, similar to recent findings for individual-level immune priming in invertebrates. Epidemiological modeling further suggests that active social immunisation is adaptive, as it leads to faster elimination of the disease and lower death rates than passive immunisation. Interestingly, humans have also utilised the protective effect of low-level infections to fight smallpox by intentional transfer of low pathogen doses (“variolation” or “inoculation”).},
  author       = {Konrad, Matthias and Vyleta, Meghan and Theis, Fabian and Stock, Miriam and Klatt, Martina and Drescher, Verena and Marr, Carsten and Ugelvig, Line V and Cremer, Sylvia},
  publisher    = {Dryad},
  title        = {{Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies}},
  doi          = {10.5061/dryad.sv37s},
  year         = {2012},
}

@misc{9757,
  abstract     = {To fight infectious diseases, host immune defences are employed at multiple levels. Sanitary behaviour, such as pathogen avoidance and removal, acts as a first line of defence to prevent infection [1] before activation of the physiological immune system. Insect societies have evolved a wide range of collective hygiene measures and intensive health care towards pathogen-exposed group members [2]. One of the most common behaviours is allogrooming, in which nestmates remove infectious particles from the body surfaces of exposed individuals [3]. Here we show that, in invasive garden ants, grooming of fungus-exposed brood is effective beyond the sheer mechanical removal of fungal conidiospores as it also includes chemical disinfection through the application of poison produced by the ants themselves. Formic acid is the main active component of the poison. It inhibits fungal growth of conidiospores remaining on the brood surface after grooming and also those collected in the mouth of the grooming ant. This dual function is achieved by uptake of the poison droplet into the mouth through acidopore self-grooming and subsequent application onto the infectious brood via brood grooming. This extraordinary behaviour extends current understanding of grooming and the establishment of social immunity in insect societies.},
  author       = {Tragust, Simon and Mitteregger, Barbara and Barone, Vanessa and Konrad, Matthias and Ugelvig, Line V and Cremer, Sylvia},
  publisher    = {Dryad},
  title        = {{Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison}},
  doi          = {10.5061/dryad.61649},
  year         = {2012},
}

@misc{9758,
  abstract     = {We propose a two-step procedure for estimating multiple migration rates in an approximate Bayesian computation (ABC) framework, accounting for global nuisance parameters. The approach is not limited to migration, but generally of interest for inference problems with multiple parameters and a modular structure (e.g. independent sets of demes or loci). We condition on a known, but complex demographic model of a spatially subdivided population, motivated by the reintroduction of Alpine ibex (Capra ibex) into Switzerland. In the first step, the global parameters ancestral mutation rate and male mating skew have been estimated for the whole population in Aeschbacher et al. (Genetics 2012; 192: 1027). In the second step, we estimate in this study the migration rates independently for clusters of demes putatively connected by migration. For large clusters (many migration rates), ABC faces the problem of too many summary statistics. We therefore assess by simulation if estimation per pair of demes is a valid alternative. We find that the trade-off between reduced dimensionality for the pairwise estimation on the one hand and lower accuracy due to the assumption of pairwise independence on the other depends on the number of migration rates to be inferred: the accuracy of the pairwise approach increases with the number of parameters, relative to the joint estimation approach. To distinguish between low and zero migration, we perform ABC-type model comparison between a model with migration and one without. Applying the approach to microsatellite data from Alpine ibex, we find no evidence for substantial gene flow via migration, except for one pair of demes in one direction.},
  author       = {Aeschbacher, Simon and Futschik, Andreas and Beaumont, Mark},
  publisher    = {Dryad},
  title        = {{Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates}},
  doi          = {10.5061/dryad.274b1},
  year         = {2012},
}

@inbook{10896,
  abstract     = {Under physiological conditions the brain, via the purine salvage pathway, reuses the preformed purine bases hypoxanthine, derived from ATP degradation, and adenine (Ade), derived from polyamine synthesis, to restore its ATP pool. However, the massive degradation of ATP during ischemia, although providing valuable neuroprotective adenosine, results in the accumulation and loss of diffusible purine metabolites and thereby leads to a protracted reduction in the post-ischemic ATP pool size. In vivo, this may both limit the ability to deploy ATP-dependent reparative mechanisms and reduce the subsequent availability of adenosine, whilst in brain slices results in tissue with substantially lower levels of ATP than in vivo. In the present review, we describe the mechanisms by which brain tissue replenishes its ATP, how this can be improved with the clinically tolerated chemicals D-ribose and adenine, and the functional, and potential therapeutic, implications of doing so.},
  author       = {zur Nedden, Stephanie and Doney, Alexander S. and Frenguelli, Bruno G.},
  booktitle    = {Adenosine},
  editor       = {Masino, Susan and Boison, Detlev},
  isbn         = {9781461439028},
  pages        = {109--129},
  publisher    = {Springer},
  title        = {{The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books}},
  doi          = {10.1007/978-1-4614-3903-5_6},
  year         = {2012},
}

@inproceedings{10903,
  abstract     = {We propose a logic-based framework for automated reasoning about sequential programs manipulating singly-linked lists and arrays with unbounded data. We introduce the logic SLAD, which allows combining shape constraints, written in a fragment of Separation Logic, with data and size constraints. We address the problem of checking the entailment between SLAD formulas, which is crucial in performing pre-post condition reasoning. Although this problem is undecidable in general for SLAD, we propose a sound and powerful procedure that is able to solve this problem for a large class of formulas, beyond the capabilities of existing techniques and tools. We prove that this procedure is complete, i.e., it is actually a decision procedure for this problem, for an important fragment of SLAD including known decidable logics. We implemented this procedure and shown its preciseness and its efficiency on a significant benchmark of formulas.},
  author       = {Bouajjani, Ahmed and Dragoi, Cezara and Enea, Constantin and Sighireanu, Mihaela},
  booktitle    = {Automated Technology for Verification and Analysis},
  isbn         = {9783642333859},
  issn         = {1611-3349},
  location     = {Thiruvananthapuram, India},
  pages        = {167--182},
  publisher    = {Springer},
  title        = {{Accurate invariant checking for programs manipulating lists and arrays with infinite data}},
  doi          = {10.1007/978-3-642-33386-6_14},
  volume       = {7561},
  year         = {2012},
}

@inproceedings{10904,
  abstract     = {Multi-dimensional mean-payoff and energy games provide the mathematical foundation for the quantitative study of reactive systems, and play a central role in the emerging quantitative theory of verification and synthesis. In this work, we study the strategy synthesis problem for games with such multi-dimensional objectives along with a parity condition, a canonical way to express ω-regular conditions. While in general, the winning strategies in such games may require infinite memory, for synthesis the most relevant problem is the construction of a finite-memory winning strategy (if one exists). Our main contributions are as follows. First, we show a tight exponential bound (matching upper and lower bounds) on the memory required for finite-memory winning strategies in both multi-dimensional mean-payoff and energy games along with parity objectives. This significantly improves the triple exponential upper bound for multi energy games (without parity) that could be derived from results in literature for games on VASS (vector addition systems with states). Second, we present an optimal symbolic and incremental algorithm to compute a finite-memory winning strategy (if one exists) in such games. Finally, we give a complete characterization of when finite memory of strategies can be traded off for randomness. In particular, we show that for one-dimension mean-payoff parity games, randomized memoryless strategies are as powerful as their pure finite-memory counterparts.},
  author       = {Chatterjee, Krishnendu and Randour, Mickael and Raskin, Jean-François},
  booktitle    = {CONCUR 2012 - Concurrency Theory},
  editor       = {Koutny, Maciej and Ulidowski, Irek},
  isbn         = {9783642329395},
  issn         = {0302-9743},
  location     = {Newcastle upon Tyne, United Kingdom},
  pages        = {115--131},
  publisher    = {Springer},
  title        = {{Strategy synthesis for multi-dimensional quantitative objectives}},
  doi          = {10.1007/978-3-642-32940-1_10},
  volume       = {7454},
  year         = {2012},
}

@inproceedings{10905,
  abstract     = {Energy games belong to a class of turn-based two-player infinite-duration games played on a weighted directed graph. It is one of the rare and intriguing combinatorial problems that lie in NP ∩ co−NP, but are not known to be in P. While the existence of polynomial-time algorithms has been a major open problem for decades, there is no algorithm that solves any non-trivial subclass in polynomial time.
In this paper, we give several results based on the weight structures of the graph. First, we identify a notion of penalty and present a polynomial-time algorithm when the penalty is large. Our algorithm is the first polynomial-time algorithm on a large class of weighted graphs. It includes several counter examples that show that many previous algorithms, such as value iteration and random facet algorithms, require at least sub-exponential time. Our main technique is developing the first non-trivial approximation algorithm and showing how to convert it to an exact algorithm. Moreover, we show that in a practical case in verification where weights are clustered around a constant number of values, the energy game problem can be solved in polynomial time. We also show that the problem is still as hard as in general when the clique-width is bounded or the graph is strongly ergodic, suggesting that restricting graph structures need not help.},
  author       = {Chatterjee, Krishnendu and Henzinger, Monika H and Krinninger, Sebastian and Nanongkai, Danupon},
  booktitle    = {Algorithms – ESA 2012},
  isbn         = {9783642330896},
  issn         = {1611-3349},
  location     = {Ljubljana, Slovenia},
  pages        = {301--312},
  publisher    = {Springer},
  title        = {{Polynomial-time algorithms for energy games with special weight structures}},
  doi          = {10.1007/978-3-642-33090-2_27},
  volume       = {7501},
  year         = {2012},
}

@inproceedings{10906,
  abstract     = {HSF(C) is a tool that automates verification of safety and liveness properties for C programs. This paper describes the verification approach taken by HSF(C) and provides instructions on how to install and use the tool.},
  author       = {Grebenshchikov, Sergey and Gupta, Ashutosh and Lopes, Nuno P. and Popeea, Corneliu and Rybalchenko, Andrey},
  booktitle    = {Tools and Algorithms for the Construction and Analysis of Systems},
  editor       = {Flanagan, Cormac and König, Barbara},
  isbn         = {9783642287558},
  issn         = {1611-3349},
  location     = {Tallinn, Estonia},
  pages        = {549--551},
  publisher    = {Springer},
  title        = {{HSF(C): A software verifier based on Horn clauses}},
  doi          = {10.1007/978-3-642-28756-5_46},
  volume       = {7214},
  year         = {2012},
}

