RNA silencing genes control de novo DNA methylation
S.W.-L. Chan, D. Zilberman,  Zhixin Xie,  Lisa K. Johansen, J.C. Carrington, S.E. Jacobsen, Science 303 (2004) 1336.

Role of Arabidopsis ARGONAUT in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.

Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).

Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.

Algorithmic challenges in web search engines
M.H. Henzinger, Internet Mathematics 1 (2004) 115–123.

The past, present, and future of web search engines
M.H. Henzinger, in:, 31st International Colloquium on Automata, Languages and Programming, Springer Nature, 2004, p. 3.

Algorithmic aspects of web search engines
M.H. Henzinger, in:, 2th Annual European Symposium on Algorithms, Springer Nature, 2004, p. 3.

The past, present, and future of web information retrieval
M.H. Henzinger, in:, SPIE Proceedings, Society of Photo-Optical Instrumentation Engineers, 2004, pp. 23–26.

Extracting knowledge from the World Wide Web
M.H. Henzinger, S. Lawrence, Proceedings of the National Academy of Sciences 101 (2004) 5186–5191.

Equal sums of three powers
T.D. Browning, R. Heath Brown, Inventiones Mathematicae 157 (2004) 553–573.

Involvement of the intracellular ion channel CLI in microglia-mediated ;2-amyloid-induced neurotoxicity
G. Novarino, C. Fabrizi, R. Tonini, M. Denti, A. Malchiodi, G. Lauro, B. Sacchetti, S. Paradisi, A. Ferroni, P. Curmi, S. Breit, M. Mazzanti, Journal of Neuroscience 24 (2004) 5322–5330.

 Equivalent forms of the Bessis-Moussa-Villani conjecture
É. Lieb, R. Seiringer, Journal of Statistical Physics 115 (2004) 185–190.

One-dimensional behavior of dilute, trapped Bose gases
É. Lieb, R. Seiringer, J. Yngvason, Communications in Mathematical Physics 244 (2004) 347–393.

Bose-Einstein quantum phase transition in an optical lattice model
M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, Physical Review A - Atomic, Molecular, and Optical Physics 70 (2004) 023612-1-0236121-2.

Convex quadrilaterals and k-sets 
L. Lovász, K. Vesztergombi, U. Wagner, E. Welzl, in:, J. Pach (Ed.), Towards a Theory of Geometric Graphs, American Mathematical Society, 2004, pp. 139–148.

New constructions of weak ;5-nets
J. Matousek, U. Wagner, Discrete &; Computational Geometry 32 (2004) 195–206.

Shape dimension and intrinsic metric from samples of manifolds
J. Giesen, U. Wagner, Discrete &; Computational Geometry 32 (2004) 245–267.

The Matryoshka dolls of plant polarity
M. Sauer, J. Friml, Development 131 (2004) 5774–5775.

Function and distribution of glutamate receptors in the central synapses
A. Momiyama, R. Shigemoto, Tanpakushitsu Kakusan Koso Protein Nucleic Acid Enzyme 49 (2004) 287–294.

Immunocytochemical localization of the ;11A subunit of the P/Q-type calcium channel in the rat cerebellum
Á. Kulik, K. Nakadate, A. Hagiwara, Y. Fukazawa, R. Luján, H. Saito, N. Suzuki, A. Futatsugi, K. Mikoshiba, M. Frotscher, R. Shigemoto, European Journal of Neuroscience 19 (2004) 2169–2178.